CI
4ccb4240e0
Build pipeline: viash-hub.craftbox.v0.3.2-tpktm
Source commit: 7d520dc76c
Source message: Bump version to v0.3.2
238 lines
7.2 KiB
YAML
238 lines
7.2 KiB
YAML
name: "sync_resources"
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version: "v0.3.2"
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authors:
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- name: "Robrecht Cannoodt"
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roles:
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- "author"
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- "maintainer"
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info:
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links:
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email: "robrecht@data-intuitive.com"
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github: "rcannood"
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orcid: "0000-0003-3641-729X"
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linkedin: "robrechtcannoodt"
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organizations:
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- name: "Data Intuitive"
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href: "https://www.data-intuitive.com"
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role: "Data Science Engineer"
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- name: "Open Problems"
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href: "https://openproblems.bio"
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role: "Core Member"
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- name: "Dries Schaumont"
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roles:
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- "reviewer"
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info:
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links:
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email: "dries@data-intuitive.com"
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github: "DriesSchaumont"
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orcid: "0000-0002-4389-0440"
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linkedin: "dries-schaumont"
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organizations:
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- name: "Data Intuitive"
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href: "https://www.data-intuitive.com"
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role: "Data Scientist"
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argument_groups:
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- name: "Inputs"
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arguments:
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- type: "file"
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name: "--input"
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alternatives:
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- "-i"
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description: "Path to the _viash.yaml project configuration file."
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info: null
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default:
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- "_viash.yaml"
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must_exist: true
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create_parent: true
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required: false
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direction: "input"
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multiple: false
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multiple_sep: ";"
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- name: "Outputs"
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arguments:
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- type: "file"
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name: "--output"
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alternatives:
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- "-o"
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description: "Path to the directory where the resources will be synced to."
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info: null
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default:
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- "."
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must_exist: true
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create_parent: true
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required: false
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direction: "output"
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multiple: false
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multiple_sep: ";"
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- name: "Arguments"
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arguments:
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- type: "boolean_true"
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name: "--dryrun"
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description: "Does not display the operations performed from the specified command."
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info: null
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direction: "input"
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- type: "string"
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name: "--exclude"
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description: "Exclude all files or objects from the command that matches the specified\
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\ pattern."
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info: null
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required: false
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direction: "input"
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multiple: true
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multiple_sep: ";"
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resources:
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- type: "bash_script"
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path: "script.sh"
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is_executable: true
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summary: "Sync a Viash package's test resources to the local filesystem"
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description: "Sync a Viash package's test resources to the local filesystem based\
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\ on the\nthe `.info.test_resources` field in the `_viash.yaml` file. This is useful\
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\ for\ntesting and debugging purposes.\n"
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usage: "sync_resources\nsync_resources --input _viash.yaml --output .\n"
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test_resources:
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- type: "bash_script"
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path: "test.sh"
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is_executable: true
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info: null
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status: "enabled"
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scope:
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image: "public"
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target: "public"
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requirements:
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commands:
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- "ps"
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license: "MIT"
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links:
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repository: "https://github.com/viash-hub/craftbox"
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runners:
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- type: "executable"
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id: "executable"
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docker_setup_strategy: "ifneedbepullelsecachedbuild"
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- type: "nextflow"
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id: "nextflow"
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directives:
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tag: "$id"
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auto:
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simplifyInput: true
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simplifyOutput: false
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transcript: false
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publish: false
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config:
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labels:
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mem1gb: "memory = 1000000000.B"
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mem2gb: "memory = 2000000000.B"
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mem5gb: "memory = 5000000000.B"
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mem10gb: "memory = 10000000000.B"
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mem20gb: "memory = 20000000000.B"
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mem50gb: "memory = 50000000000.B"
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mem100gb: "memory = 100000000000.B"
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mem200gb: "memory = 200000000000.B"
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mem500gb: "memory = 500000000000.B"
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mem1tb: "memory = 1000000000000.B"
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mem2tb: "memory = 2000000000000.B"
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mem5tb: "memory = 5000000000000.B"
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mem10tb: "memory = 10000000000000.B"
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mem20tb: "memory = 20000000000000.B"
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mem50tb: "memory = 50000000000000.B"
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mem100tb: "memory = 100000000000000.B"
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mem200tb: "memory = 200000000000000.B"
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mem500tb: "memory = 500000000000000.B"
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mem1gib: "memory = 1073741824.B"
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mem2gib: "memory = 2147483648.B"
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mem4gib: "memory = 4294967296.B"
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mem8gib: "memory = 8589934592.B"
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mem16gib: "memory = 17179869184.B"
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mem32gib: "memory = 34359738368.B"
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mem64gib: "memory = 68719476736.B"
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mem128gib: "memory = 137438953472.B"
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mem256gib: "memory = 274877906944.B"
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mem512gib: "memory = 549755813888.B"
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mem1tib: "memory = 1099511627776.B"
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mem2tib: "memory = 2199023255552.B"
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mem4tib: "memory = 4398046511104.B"
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mem8tib: "memory = 8796093022208.B"
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mem16tib: "memory = 17592186044416.B"
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mem32tib: "memory = 35184372088832.B"
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mem64tib: "memory = 70368744177664.B"
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mem128tib: "memory = 140737488355328.B"
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mem256tib: "memory = 281474976710656.B"
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mem512tib: "memory = 562949953421312.B"
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cpu1: "cpus = 1"
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cpu2: "cpus = 2"
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cpu5: "cpus = 5"
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cpu10: "cpus = 10"
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cpu20: "cpus = 20"
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cpu50: "cpus = 50"
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cpu100: "cpus = 100"
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cpu200: "cpus = 200"
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cpu500: "cpus = 500"
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cpu1000: "cpus = 1000"
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debug: false
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container: "docker"
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engines:
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- type: "docker"
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id: "docker"
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image: "alpine:3"
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target_registry: "images.viash-hub.com"
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target_tag: "v0.3.2"
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namespace_separator: "/"
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setup:
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- type: "apk"
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packages:
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- "bash"
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- "rclone"
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- "yq"
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- type: "docker"
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run:
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- "rclone config create s3 s3 anonymous=true"
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- "rclone config create gs gcs anonymous=true"
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entrypoint: []
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cmd: null
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- type: "native"
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id: "native"
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build_info:
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config: "src/sync_resources/config.vsh.yaml"
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runner: "executable"
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engine: "docker|native"
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output: "target/executable/sync_resources"
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executable: "target/executable/sync_resources/sync_resources"
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viash_version: "0.9.7"
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git_commit: "7d520dc76cb6b3f1eaece9afcc9a3458ca82afe9"
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git_remote: "https://github.com/viash-hub/craftbox"
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package_config:
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name: "craftbox"
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version: "v0.3.2"
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summary: "A collection of custom-tailored scripts and applied utilities built with\
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\ Viash.\n"
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description: "`craftbox` is a curated collection of custom scripts and utilities\
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\ designed to tackle context-specific tasks.\n\nEmphasizing the Viash principles,\
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\ `craftbox` components aim for **reusability**, **reproducibility**, and adherence\
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\ to **best practices**. Key features generally include:\n\n* **Standalone & Nextflow\
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\ Ready:** Components are built to run directly via the command line or be smoothly\
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\ integrated into Nextflow workflows.\n* **Custom Implementations:** Contains\
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\ scripts and tools developed for particular tasks that may not be found in broader\
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\ collections.\n* **High Quality Standards (promoted by Viash):**\n * Clear\
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\ documentation for components and their parameters.\n * Full exposure of underlying\
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\ script/tool arguments for fine-grained control.\n * Containerized (Docker)\
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\ to ensure dependency management and a consistent, reproducible runtime environment.\n\
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\ * Unit tested where applicable to ensure components function as expected.\n"
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info: null
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viash_version: "0.9.7"
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source: "src"
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target: "target"
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config_mods:
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- ".requirements.commands := ['ps']\n"
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- ".engines += { type: \"native\" }"
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- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
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- ".engines[.type == 'docker'].target_tag := 'v0.3.2'"
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keywords:
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- "scripts"
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- "custom"
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- "implementations"
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- "utilities"
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license: "MIT"
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organization: "vsh"
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links:
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repository: "https://github.com/viash-hub/craftbox"
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issue_tracker: "https://github.com/viash-hub/craftbox/issues"
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