CI
f014f08cec
Build pipeline: viash-hub.craftbox.concat-text-w7mdh
Source commit: 5b88b9d8e6
Source message: Update src/concat_text/config.vsh.yaml
Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>
47 lines
1.1 KiB
YAML
47 lines
1.1 KiB
YAML
name: concat_text
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description: |
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Concatenate a number of text files, handle gzipped text files gracefully and
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optionally gzip the output text file.
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This component is useful for concatening fastq files from different lanes, for instance.
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argument_groups:
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- name: Input arguments
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arguments:
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- name: --input
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description: A list of (gzipped) text files.
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type: file
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multiple: true
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required: true
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example: input?.txt.gz
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- name: Output arguments
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arguments:
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- name: "--zip_output"
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type: boolean_true
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description: Should the output be zipped?
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- name: --output
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description: File to write the output to, optionally gzipped.
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type: file
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direction: output
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example: output.txt
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resources:
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- type: bash_script
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path: script.sh
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test_resources:
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- type: bash_script
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path: test.sh
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engines:
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- type: docker
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image: alpine:latest
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setup:
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- type: apk
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packages:
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- bash
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- procps
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- file
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runners:
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- type: executable
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- type: nextflow
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