Build branch main with version main (0d4c458)

Build pipeline: viash-hub.demultiplex.main-zst7j

Source commit: 0d4c4584f0

Source message: Only publish transfer_complete.txt file when the exit code is 0 (#58)

CHANGELOG.md

@@ -1,3 +1,9 @@
+# demultiplex v0.4.4
+
+## Bug fixes
+
+* Only add the `transfer_complete.txt` files when the exitcode for the workflow is 0 (PR #58)
+
 # demultiplex v0.4.3
 
 ## Minor changes

src/runner/main.nf

@@ -73,8 +73,10 @@ workflow run_wf {
           // Alternatively setOnComplete could be used to add actions, but that only adds them at the end of the list (which is executed in order).
           // The 'completed.txt' file must be created before the onComplete of the integration tests are run, so we need to prepend to the list.
           workflow.onCompleteActions.add(0, {
-            def complete_file = file("${params.publish_dir}/${prefix}/transfer_completed.txt")
+            if (workflow.exitStatus == 0) { 
-            complete_file.text = "" // This will create a file when it does not exist.
+              def complete_file = file("${params.publish_dir}/${prefix}/transfer_completed.txt")
+              complete_file.text = "" // This will create a file when it does not exist.
+            }
           })
 
           [

target/executable/io/interop_summary_to_csv/.config.vsh.yaml

@@ -160,9 +160,9 @@ build_info:
   output: "target/executable/io/interop_summary_to_csv"
   executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/executable/io/interop_summary_to_csv/interop_summary_to_csv

@@ -454,9 +454,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
 mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
-LABEL org.opencontainers.image.created="2025-07-29T09:06:08Z"
+LABEL org.opencontainers.image.created="2025-08-05T10:55:23Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+LABEL org.opencontainers.image.revision="0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/io/publish/.config.vsh.yaml

@@ -222,9 +222,9 @@ build_info:
   output: "target/executable/io/publish"
   executable: "target/executable/io/publish/publish"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/executable/io/publish/publish

@@ -450,9 +450,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component io publish"
-LABEL org.opencontainers.image.created="2025-07-29T09:06:07Z"
+LABEL org.opencontainers.image.created="2025-08-05T10:55:23Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+LABEL org.opencontainers.image.revision="0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/io/untar/.config.vsh.yaml

@@ -159,9 +159,9 @@ build_info:
   output: "target/executable/io/untar"
   executable: "target/executable/io/untar/untar"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/executable/io/untar/untar

@@ -450,9 +450,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component io untar"
-LABEL org.opencontainers.image.created="2025-07-29T09:06:07Z"
+LABEL org.opencontainers.image.created="2025-08-05T10:55:23Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+LABEL org.opencontainers.image.revision="0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/nextflow/dataflow/combine_samples/.config.vsh.yaml

@@ -168,9 +168,9 @@ build_info:
   output: "target/nextflow/dataflow/combine_samples"
   executable: "target/nextflow/dataflow/combine_samples/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/nextflow/dataflow/combine_samples/main.nf

@@ -3235,9 +3235,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/dataflow/combine_samples",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml

@@ -159,9 +159,9 @@ build_info:
   output: "target/nextflow/dataflow/gather_fastqs_and_validate"
   executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/nextflow/dataflow/gather_fastqs_and_validate/main.nf

@@ -3232,9 +3232,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/demultiplex/.config.vsh.yaml

@@ -268,9 +268,9 @@ build_info:
   output: "target/nextflow/demultiplex"
   executable: "target/nextflow/demultiplex/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
   dependencies:
   - "target/nextflow/io/untar"
   - "target/nextflow/dataflow/gather_fastqs_and_validate"

target/nextflow/demultiplex/main.nf

@@ -3380,9 +3380,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/demultiplex",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/detect_demultiplexer/.config.vsh.yaml

@@ -168,9 +168,9 @@ build_info:
   output: "target/nextflow/detect_demultiplexer"
   executable: "target/nextflow/detect_demultiplexer/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/nextflow/detect_demultiplexer/main.nf

@@ -3224,9 +3224,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/detect_demultiplexer",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml

@@ -160,9 +160,9 @@ build_info:
   output: "target/nextflow/io/interop_summary_to_csv"
   executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/nextflow/io/interop_summary_to_csv/main.nf

@@ -3233,9 +3233,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/interop_summary_to_csv",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/io/publish/.config.vsh.yaml

@@ -222,9 +222,9 @@ build_info:
   output: "target/nextflow/io/publish"
   executable: "target/nextflow/io/publish/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/nextflow/io/publish/main.nf

@@ -3302,9 +3302,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/publish",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/io/untar/.config.vsh.yaml

@@ -159,9 +159,9 @@ build_info:
   output: "target/nextflow/io/untar"
   executable: "target/nextflow/io/untar/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
 package_config:
   name: "demultiplex"
   version: "main"

target/nextflow/io/untar/main.nf

@@ -3232,9 +3232,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/untar",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",

target/nextflow/runner/.config.vsh.yaml

@@ -214,9 +214,9 @@ build_info:
   output: "target/nextflow/runner"
   executable: "target/nextflow/runner/main.nf"
   viash_version: "0.9.4"
-  git_commit: "76a469a0dde244672cd700cb70ea7a874b2fb6ee"
+  git_commit: "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-36-g76a469a"
+  git_tag: "v0.1.1-37-g0d4c458"
   dependencies:
   - "target/nextflow/demultiplex"
   - "target/nextflow/io/publish"

target/nextflow/runner/main.nf

@@ -3296,9 +3296,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/runner",
     "viash_version" : "0.9.4",
-    "git_commit" : "76a469a0dde244672cd700cb70ea7a874b2fb6ee",
+    "git_commit" : "0d4c4584f0d18ab18c21e7d71c43b8deed2c4805",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-36-g76a469a"
+    "git_tag" : "v0.1.1-37-g0d4c458"
   },
   "package_config" : {
     "name" : "demultiplex",
@@ -3419,8 +3419,10 @@ workflow run_wf {
           // Alternatively setOnComplete could be used to add actions, but that only adds them at the end of the list (which is executed in order).
           // The 'completed.txt' file must be created before the onComplete of the integration tests are run, so we need to prepend to the list.
           workflow.onCompleteActions.add(0, {
-            def complete_file = file("${params.publish_dir}/${prefix}/transfer_completed.txt")
+            if (workflow.exitStatus == 0) { 
-            complete_file.text = "" // This will create a file when it does not exist.
+              def complete_file = file("${params.publish_dir}/${prefix}/transfer_completed.txt")
+              complete_file.text = "" // This will create a file when it does not exist.
+            }
           })
 
           [