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Build branch main with version main (5cb1323)

Browse Source 
Build pipeline: viash-hub.demultiplex.main-6d5fm

Source commit: 5cb13230bf

Source message: Add resource labels to workflows. (#22)

* Add resource labels to workflows.

* Add CHANGELOG entry
This commit is contained in:
CI
2024-11-06 17:52:30 +00:00
parent 0e5d645386
commit 304b1d24b3
19 changed files with 125 additions and 92 deletions
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6
target/nextflow/dataflow/combine_samples/.config.vsh.yaml
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@@ -139,9 +139,9 @@ build_info:
output: "target/nextflow/dataflow/combine_samples"
executable: "target/nextflow/dataflow/combine_samples/main.nf"
viash_version: "0.9.0"
git_commit: "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e"
git_remote: "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-2-ga311a12"
git_commit: "5cb13230bf682321226addce896a3015e8864913"
git_remote: "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-3-g5cb1323"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/dataflow/combine_samples/main.nf
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@@ -2972,9 +2972,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/combine_samples",
"viash_version" : "0.9.0",
"git_commit" : "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e",
"git_remote" : "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-2-ga311a12"
"git_commit" : "5cb13230bf682321226addce896a3015e8864913",
"git_remote" : "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-3-g5cb1323"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
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@@ -133,9 +133,9 @@ build_info:
output: "target/nextflow/dataflow/gather_fastqs_and_validate"
executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
viash_version: "0.9.0"
git_commit: "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e"
git_remote: "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-2-ga311a12"
git_commit: "5cb13230bf682321226addce896a3015e8864913"
git_remote: "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-3-g5cb1323"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
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@@ -2965,9 +2965,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
"viash_version" : "0.9.0",
"git_commit" : "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e",
"git_remote" : "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-2-ga311a12"
"git_commit" : "5cb13230bf682321226addce896a3015e8864913",
"git_remote" : "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-3-g5cb1323"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/demultiplex/.config.vsh.yaml
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@@ -186,9 +186,9 @@ build_info:
output: "target/nextflow/demultiplex"
executable: "target/nextflow/demultiplex/main.nf"
viash_version: "0.9.0"
git_commit: "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e"
git_remote: "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-2-ga311a12"
git_commit: "5cb13230bf682321226addce896a3015e8864913"
git_remote: "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-3-g5cb1323"
dependencies:
- "target/nextflow/io/untar"
- "target/nextflow/dataflow/gather_fastqs_and_validate"

11
target/nextflow/demultiplex/main.nf
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@@ -3049,9 +3049,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/demultiplex",
"viash_version" : "0.9.0",
"git_commit" : "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e",
"git_remote" : "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-2-ga311a12"
"git_commit" : "5cb13230bf682321226addce896a3015e8864913",
"git_remote" : "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-3-g5cb1323"
},
"package_config" : {
"name" : "demultiplex",
@@ -3110,6 +3110,7 @@ workflow run_wf {
samples_ch = input_ch
// untar input if needed
| untar.run(
directives: [label: ["lowmem", "lowcpu"]],
runIf: {id, state ->
def inputStr = state.input.toString()
inputStr.endsWith(".tar.gz") || \
@@ -3142,6 +3143,7 @@ workflow run_wf {
}
| interop_summary_to_csv.run(
directives: [label: ["lowmem", "verylowcpu"]],
fromState: [
"input": "input",
],
@@ -3152,6 +3154,7 @@ workflow run_wf {
)
// run bcl_convert
| bcl_convert.run(
directives: [label: ["highmem", "midcpu"]],
fromState: [
"bcl_input_directory": "input",
"sample_sheet": "sample_sheet",
@@ -3193,6 +3196,7 @@ workflow run_wf {
]
)
| falco.run(
directives: [label: ["lowcpu", "lowmem"]],
fromState: {id, state ->
reverse_fastqs_list = state.reverse_fastqs ? state.reverse_fastqs : []
[
@@ -3208,6 +3212,7 @@ workflow run_wf {
},
)
| multiqc.run(
directives: [label: ["lowcpu", "lowmem"]],
fromState: {id, state ->
[
"input": [

6
target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
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@@ -141,9 +141,9 @@ build_info:
output: "target/nextflow/io/interop_summary_to_csv"
executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
viash_version: "0.9.0"
git_commit: "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e"
git_remote: "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-2-ga311a12"
git_commit: "5cb13230bf682321226addce896a3015e8864913"
git_remote: "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-3-g5cb1323"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/interop_summary_to_csv/main.nf
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@@ -2977,9 +2977,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/interop_summary_to_csv",
"viash_version" : "0.9.0",
"git_commit" : "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e",
"git_remote" : "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-2-ga311a12"
"git_commit" : "5cb13230bf682321226addce896a3015e8864913",
"git_remote" : "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-3-g5cb1323"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/untar/.config.vsh.yaml
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@@ -148,9 +148,9 @@ build_info:
output: "target/nextflow/io/untar"
executable: "target/nextflow/io/untar/main.nf"
viash_version: "0.9.0"
git_commit: "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e"
git_remote: "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-2-ga311a12"
git_commit: "5cb13230bf682321226addce896a3015e8864913"
git_remote: "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-3-g5cb1323"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/untar/main.nf
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@@ -2989,9 +2989,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/untar",
"viash_version" : "0.9.0",
"git_commit" : "a311a12056e0dbcfa8103ab0a4f6c7350f2f4c4e",
"git_remote" : "https://x-access-token:ghs_I5gscIGc0N3NRaJ8ljNMSCb4w56xXA2xlViM@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-2-ga311a12"
"git_commit" : "5cb13230bf682321226addce896a3015e8864913",
"git_remote" : "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-3-g5cb1323"
},
"package_config" : {
"name" : "demultiplex",