vsh/demultiplex
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Build branch main with version main (45accaa)

Browse Source 
Build pipeline: viash-hub.demultiplex.main-ghkns

Source commit: 45accaa50e

Source message: Avoid empty csv entries when parsing sample information (#29)
This commit is contained in:
CI
2024-12-11 18:06:57 +00:00
parent 2121a3ac1c
commit 6be5d38b03
22 changed files with 71 additions and 59 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
target/nextflow/dataflow/combine_samples/.config.vsh.yaml
View File

@@ -139,9 +139,9 @@ build_info:
output: "target/nextflow/dataflow/combine_samples"
executable: "target/nextflow/dataflow/combine_samples/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/dataflow/combine_samples/main.nf
View File

@@ -2972,9 +2972,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/combine_samples",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
View File

@@ -133,9 +133,9 @@ build_info:
output: "target/nextflow/dataflow/gather_fastqs_and_validate"
executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
package_config:
name: "demultiplex"
version: "main"

11
target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
View File

@@ -2965,9 +2965,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",
@@ -3063,7 +3063,10 @@ workflow run_wf {
println "Found sample names column '${csv_items[sample_id_column_index]}'."
return
}
samples += csv_items[sample_id_column_index]
def candidate_sample_id = csv_items[sample_id_column_index]
if (candidate_sample_id?.trim()) { // Don't add empty csv entries.
samples += csv_items[sample_id_column_index]
}
}
// This return is important! (If 'true' is returned, the parsing stops.)
return

6
target/nextflow/demultiplex/.config.vsh.yaml
View File

@@ -220,9 +220,9 @@ build_info:
output: "target/nextflow/demultiplex"
executable: "target/nextflow/demultiplex/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
dependencies:
- "target/nextflow/io/untar"
- "target/nextflow/dataflow/gather_fastqs_and_validate"

6
target/nextflow/demultiplex/main.nf
View File

@@ -3088,9 +3088,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/demultiplex",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
View File

@@ -141,9 +141,9 @@ build_info:
output: "target/nextflow/io/interop_summary_to_csv"
executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/interop_summary_to_csv/main.nf
View File

@@ -2977,9 +2977,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/interop_summary_to_csv",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/publish/.config.vsh.yaml
View File

@@ -170,9 +170,9 @@ build_info:
output: "target/nextflow/io/publish"
executable: "target/nextflow/io/publish/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/publish/main.nf
View File

@@ -3012,9 +3012,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/publish",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/io/untar/.config.vsh.yaml
View File

@@ -148,9 +148,9 @@ build_info:
output: "target/nextflow/io/untar"
executable: "target/nextflow/io/untar/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
package_config:
name: "demultiplex"
version: "main"

6
target/nextflow/io/untar/main.nf
View File

@@ -2989,9 +2989,9 @@ meta = [
"engine" : "docker|native",
"output" : "target/nextflow/io/untar",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",

6
target/nextflow/runner/.config.vsh.yaml
View File

@@ -182,9 +182,9 @@ build_info:
output: "target/nextflow/runner"
executable: "target/nextflow/runner/main.nf"
viash_version: "0.9.0"
git_commit: "5c096fce4015435019d81e2cc524a478f4034adc"
git_remote: "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-10-g5c096fc"
git_commit: "45accaa50e52c6b29c78259995293789f345c80d"
git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-11-g45accaa"
dependencies:
- "target/nextflow/demultiplex"
- "target/nextflow/io/publish"

6
target/nextflow/runner/main.nf
View File

@@ -3027,9 +3027,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/runner",
"viash_version" : "0.9.0",
"git_commit" : "5c096fce4015435019d81e2cc524a478f4034adc",
"git_remote" : "https://x-access-token:ghs_dmJWFAeqmuLT7KwI3AQx37VetEueKn4JL2Vx@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-10-g5c096fc"
"git_commit" : "45accaa50e52c6b29c78259995293789f345c80d",
"git_remote" : "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-11-g45accaa"
},
"package_config" : {
"name" : "demultiplex",