From abcde69149d27087a43fa0f0dbca8f681c898f80 Mon Sep 17 00:00:00 2001 From: CI Date: Tue, 27 May 2025 20:23:12 +0000 Subject: [PATCH] Build branch replace_falco_with_fastqc with version replace_falco_with_fastqc (b964c6b) Build pipeline: viash-hub.demultiplex.replace-falco-with-fastqc-xmn6n Source commit: https://github.com/viash-hub/demultiplex/commit/b964c6be513b030c07afa48bfd3e4e6bb80644ed Source message: Fix publishing of multiqc report --- src/runner/main.nf | 2 +- .../executable/io/interop_summary_to_csv/.config.vsh.yaml | 4 ++-- .../io/interop_summary_to_csv/interop_summary_to_csv | 4 ++-- target/executable/io/publish/.config.vsh.yaml | 4 ++-- target/executable/io/publish/publish | 4 ++-- target/executable/io/untar/.config.vsh.yaml | 4 ++-- target/executable/io/untar/untar | 4 ++-- target/nextflow/dataflow/combine_samples/.config.vsh.yaml | 4 ++-- target/nextflow/dataflow/combine_samples/main.nf | 4 ++-- .../dataflow/gather_fastqs_and_validate/.config.vsh.yaml | 4 ++-- target/nextflow/dataflow/gather_fastqs_and_validate/main.nf | 4 ++-- target/nextflow/demultiplex/.config.vsh.yaml | 4 ++-- target/nextflow/demultiplex/main.nf | 4 ++-- target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml | 4 ++-- target/nextflow/io/interop_summary_to_csv/main.nf | 4 ++-- target/nextflow/io/publish/.config.vsh.yaml | 4 ++-- target/nextflow/io/publish/main.nf | 4 ++-- target/nextflow/io/untar/.config.vsh.yaml | 4 ++-- target/nextflow/io/untar/main.nf | 4 ++-- target/nextflow/runner/.config.vsh.yaml | 4 ++-- target/nextflow/runner/main.nf | 6 +++--- 21 files changed, 42 insertions(+), 42 deletions(-) diff --git a/src/runner/main.nf b/src/runner/main.nf index 86bd8e5..731d11d 100644 --- a/src/runner/main.nf +++ b/src/runner/main.nf @@ -65,7 +65,7 @@ workflow run_wf { input_demultiplexer_logs: state.demultiplexer_logs, output: fastq_output_1, output_sample_qc: sample_qc_output_1, - multiqc_output: multiqc_output_1, + output_multiqc: multiqc_output_1, output_run_information: run_information_output_1, output_demultiplexer_logs: demultiplexer_logs_output, ] diff --git a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml index 63ea739..c27bcff 100644 --- a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml +++ b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml @@ -157,9 +157,9 @@ build_info: output: "target/executable/io/interop_summary_to_csv" executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv index cea53a5..ad9fa74 100755 --- a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv +++ b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv @@ -454,9 +454,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \ mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/ LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv" -LABEL org.opencontainers.image.created="2025-05-27T14:17:37Z" +LABEL org.opencontainers.image.created="2025-05-27T20:00:48Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex" -LABEL org.opencontainers.image.revision="6e52690e5e6552549d3803eb9f10a37f63dd0108" +LABEL org.opencontainers.image.revision="b964c6be513b030c07afa48bfd3e4e6bb80644ed" LABEL org.opencontainers.image.version="replace_falco_with_fastqc" VIASHDOCKER diff --git a/target/executable/io/publish/.config.vsh.yaml b/target/executable/io/publish/.config.vsh.yaml index de219b8..cea87fe 100644 --- a/target/executable/io/publish/.config.vsh.yaml +++ b/target/executable/io/publish/.config.vsh.yaml @@ -219,9 +219,9 @@ build_info: output: "target/executable/io/publish" executable: "target/executable/io/publish/publish" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/executable/io/publish/publish b/target/executable/io/publish/publish index 4ba50eb..6ebac80 100755 --- a/target/executable/io/publish/publish +++ b/target/executable/io/publish/publish @@ -450,9 +450,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component io publish" -LABEL org.opencontainers.image.created="2025-05-27T14:17:38Z" +LABEL org.opencontainers.image.created="2025-05-27T20:00:48Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex" -LABEL org.opencontainers.image.revision="6e52690e5e6552549d3803eb9f10a37f63dd0108" +LABEL org.opencontainers.image.revision="b964c6be513b030c07afa48bfd3e4e6bb80644ed" LABEL org.opencontainers.image.version="replace_falco_with_fastqc" VIASHDOCKER diff --git a/target/executable/io/untar/.config.vsh.yaml b/target/executable/io/untar/.config.vsh.yaml index 8896e9c..820137a 100644 --- a/target/executable/io/untar/.config.vsh.yaml +++ b/target/executable/io/untar/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/executable/io/untar" executable: "target/executable/io/untar/untar" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/executable/io/untar/untar b/target/executable/io/untar/untar index ce39e8c..be21633 100755 --- a/target/executable/io/untar/untar +++ b/target/executable/io/untar/untar @@ -450,9 +450,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component io untar" -LABEL org.opencontainers.image.created="2025-05-27T14:17:37Z" +LABEL org.opencontainers.image.created="2025-05-27T20:00:48Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex" -LABEL org.opencontainers.image.revision="6e52690e5e6552549d3803eb9f10a37f63dd0108" +LABEL org.opencontainers.image.revision="b964c6be513b030c07afa48bfd3e4e6bb80644ed" LABEL org.opencontainers.image.version="replace_falco_with_fastqc" VIASHDOCKER diff --git a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml index b10b8ee..8b306ad 100644 --- a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml +++ b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml @@ -165,9 +165,9 @@ build_info: output: "target/nextflow/dataflow/combine_samples" executable: "target/nextflow/dataflow/combine_samples/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/nextflow/dataflow/combine_samples/main.nf b/target/nextflow/dataflow/combine_samples/main.nf index 1205ffa..8dd5caa 100644 --- a/target/nextflow/dataflow/combine_samples/main.nf +++ b/target/nextflow/dataflow/combine_samples/main.nf @@ -3230,9 +3230,9 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/dataflow/combine_samples", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", diff --git a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml index 712f1cd..ac57e5b 100644 --- a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml +++ b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/nextflow/dataflow/gather_fastqs_and_validate" executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf index 6c4a841..79efc8b 100644 --- a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf +++ b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf @@ -3227,9 +3227,9 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/dataflow/gather_fastqs_and_validate", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", diff --git a/target/nextflow/demultiplex/.config.vsh.yaml b/target/nextflow/demultiplex/.config.vsh.yaml index 89581e9..1c6242a 100644 --- a/target/nextflow/demultiplex/.config.vsh.yaml +++ b/target/nextflow/demultiplex/.config.vsh.yaml @@ -262,9 +262,9 @@ build_info: output: "target/nextflow/demultiplex" executable: "target/nextflow/demultiplex/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" dependencies: - "target/nextflow/io/untar" - "target/nextflow/dataflow/gather_fastqs_and_validate" diff --git a/target/nextflow/demultiplex/main.nf b/target/nextflow/demultiplex/main.nf index f410392..4d00e68 100644 --- a/target/nextflow/demultiplex/main.nf +++ b/target/nextflow/demultiplex/main.nf @@ -3369,9 +3369,9 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/demultiplex", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", diff --git a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml index 591a3c6..89ec11c 100644 --- a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml +++ b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml @@ -157,9 +157,9 @@ build_info: output: "target/nextflow/io/interop_summary_to_csv" executable: "target/nextflow/io/interop_summary_to_csv/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/nextflow/io/interop_summary_to_csv/main.nf b/target/nextflow/io/interop_summary_to_csv/main.nf index 914b5d1..1997839 100644 --- a/target/nextflow/io/interop_summary_to_csv/main.nf +++ b/target/nextflow/io/interop_summary_to_csv/main.nf @@ -3228,9 +3228,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/io/interop_summary_to_csv", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", diff --git a/target/nextflow/io/publish/.config.vsh.yaml b/target/nextflow/io/publish/.config.vsh.yaml index 5c518b2..7de5eb8 100644 --- a/target/nextflow/io/publish/.config.vsh.yaml +++ b/target/nextflow/io/publish/.config.vsh.yaml @@ -219,9 +219,9 @@ build_info: output: "target/nextflow/io/publish" executable: "target/nextflow/io/publish/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/nextflow/io/publish/main.nf b/target/nextflow/io/publish/main.nf index ae90c6f..b5ed540 100644 --- a/target/nextflow/io/publish/main.nf +++ b/target/nextflow/io/publish/main.nf @@ -3297,9 +3297,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/io/publish", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", diff --git a/target/nextflow/io/untar/.config.vsh.yaml b/target/nextflow/io/untar/.config.vsh.yaml index 409a255..4d3a13c 100644 --- a/target/nextflow/io/untar/.config.vsh.yaml +++ b/target/nextflow/io/untar/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/nextflow/io/untar" executable: "target/nextflow/io/untar/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" package_config: name: "demultiplex" version: "replace_falco_with_fastqc" diff --git a/target/nextflow/io/untar/main.nf b/target/nextflow/io/untar/main.nf index cc75f17..5116cb0 100644 --- a/target/nextflow/io/untar/main.nf +++ b/target/nextflow/io/untar/main.nf @@ -3227,9 +3227,9 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/io/untar", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", diff --git a/target/nextflow/runner/.config.vsh.yaml b/target/nextflow/runner/.config.vsh.yaml index aadb56f..caa700c 100644 --- a/target/nextflow/runner/.config.vsh.yaml +++ b/target/nextflow/runner/.config.vsh.yaml @@ -211,9 +211,9 @@ build_info: output: "target/nextflow/runner" executable: "target/nextflow/runner/main.nf" viash_version: "0.9.4" - git_commit: "6e52690e5e6552549d3803eb9f10a37f63dd0108" + git_commit: "b964c6be513b030c07afa48bfd3e4e6bb80644ed" git_remote: "https://github.com/viash-hub/demultiplex" - git_tag: "v0.1.1-34-g6e52690" + git_tag: "v0.1.1-35-gb964c6b" dependencies: - "target/nextflow/demultiplex" - "target/nextflow/io/publish" diff --git a/target/nextflow/runner/main.nf b/target/nextflow/runner/main.nf index 8ad6054..fa7edd7 100644 --- a/target/nextflow/runner/main.nf +++ b/target/nextflow/runner/main.nf @@ -3291,9 +3291,9 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/runner", "viash_version" : "0.9.4", - "git_commit" : "6e52690e5e6552549d3803eb9f10a37f63dd0108", + "git_commit" : "b964c6be513b030c07afa48bfd3e4e6bb80644ed", "git_remote" : "https://github.com/viash-hub/demultiplex", - "git_tag" : "v0.1.1-34-g6e52690" + "git_tag" : "v0.1.1-35-gb964c6b" }, "package_config" : { "name" : "demultiplex", @@ -3406,7 +3406,7 @@ workflow run_wf { input_demultiplexer_logs: state.demultiplexer_logs, output: fastq_output_1, output_sample_qc: sample_qc_output_1, - multiqc_output: multiqc_output_1, + output_multiqc: multiqc_output_1, output_run_information: run_information_output_1, output_demultiplexer_logs: demultiplexer_logs_output, ]