From d521259fcf5f7ac91b54cb4b79c13411a16c930d Mon Sep 17 00:00:00 2001
From: CI <toni@data-intuitive.com>
Date: Thu, 20 Mar 2025 19:54:44 +0000
Subject: [PATCH] Build branch main with version main (55699d2)

Build pipeline: viash-hub.demultiplex.main-z5mvc

Source commit: https://github.com/viash-hub/demultiplex/commit/55699d24c0ff8d88e572ccc1a5ebc40217bb9524

Source message: Allow letter case variations in run information CSV (#38)
---
 CHANGELOG.md                                              | 6 ++++++
 src/dataflow/gather_fastqs_and_validate/main.nf           | 4 ++--
 .../executable/io/interop_summary_to_csv/.config.vsh.yaml | 4 ++--
 .../io/interop_summary_to_csv/interop_summary_to_csv      | 4 ++--
 target/executable/io/publish/.config.vsh.yaml             | 4 ++--
 target/executable/io/publish/publish                      | 4 ++--
 target/executable/io/untar/.config.vsh.yaml               | 4 ++--
 target/executable/io/untar/untar                          | 4 ++--
 target/nextflow/dataflow/combine_samples/.config.vsh.yaml | 4 ++--
 target/nextflow/dataflow/combine_samples/main.nf          | 4 ++--
 .../dataflow/gather_fastqs_and_validate/.config.vsh.yaml  | 4 ++--
 .../nextflow/dataflow/gather_fastqs_and_validate/main.nf  | 8 ++++----
 target/nextflow/demultiplex/.config.vsh.yaml              | 4 ++--
 target/nextflow/demultiplex/main.nf                       | 4 ++--
 .../nextflow/io/interop_summary_to_csv/.config.vsh.yaml   | 4 ++--
 target/nextflow/io/interop_summary_to_csv/main.nf         | 4 ++--
 target/nextflow/io/publish/.config.vsh.yaml               | 4 ++--
 target/nextflow/io/publish/main.nf                        | 4 ++--
 target/nextflow/io/untar/.config.vsh.yaml                 | 4 ++--
 target/nextflow/io/untar/main.nf                          | 4 ++--
 target/nextflow/runner/.config.vsh.yaml                   | 4 ++--
 target/nextflow/runner/main.nf                            | 4 ++--
 22 files changed, 50 insertions(+), 44 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 74e02b3..960ad4a 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,9 @@
+# demultiplex v0.3.6
+
+## Minor updates
+
+* Allow letter case variants for headers when looking for sample information in run information CSV (PR #38).
+
 # demultiplex v0.3.5
 
 ## Breaking changes
diff --git a/src/dataflow/gather_fastqs_and_validate/main.nf b/src/dataflow/gather_fastqs_and_validate/main.nf
index 76c5d60..98ee102 100644
--- a/src/dataflow/gather_fastqs_and_validate/main.nf
+++ b/src/dataflow/gather_fastqs_and_validate/main.nf
@@ -30,8 +30,8 @@ workflow run_wf {
               return true
             }
             // [Data], [BCLConvert_Data] for illumina
-            // [Samples] for Element Biosciences
-            if (header in ["Data", "Samples", "BCLConvert_Data"]) {
+            // [Samples] or sometimes [SAMPLES] for Element Biosciences
+            if (header.toLowerCase() in ["data", "samples", "bclconvert_data"]) {
               println "Found header [${header}], start parsing."
               start_parsing = true
               return
diff --git a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
index cbf802f..090988f 100644
--- a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
@@ -146,9 +146,9 @@ build_info:
   output: "target/executable/io/interop_summary_to_csv"
   executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
index cdb9113..179995e 100755
--- a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
+++ b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
@@ -470,9 +470,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
 mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
-LABEL org.opencontainers.image.created="2025-03-04T05:45:47Z"
+LABEL org.opencontainers.image.created="2025-03-20T19:30:15Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="795abd68688f4f31b0587bc8e4a7de49b6c00825"
+LABEL org.opencontainers.image.revision="55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/io/publish/.config.vsh.yaml b/target/executable/io/publish/.config.vsh.yaml
index d51a44b..4d027fb 100644
--- a/target/executable/io/publish/.config.vsh.yaml
+++ b/target/executable/io/publish/.config.vsh.yaml
@@ -196,9 +196,9 @@ build_info:
   output: "target/executable/io/publish"
   executable: "target/executable/io/publish/publish"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/executable/io/publish/publish b/target/executable/io/publish/publish
index c4f19c0..763d0ed 100755
--- a/target/executable/io/publish/publish
+++ b/target/executable/io/publish/publish
@@ -490,9 +490,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component io publish"
-LABEL org.opencontainers.image.created="2025-03-04T05:45:47Z"
+LABEL org.opencontainers.image.created="2025-03-20T19:30:15Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="795abd68688f4f31b0587bc8e4a7de49b6c00825"
+LABEL org.opencontainers.image.revision="55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/executable/io/untar/.config.vsh.yaml b/target/executable/io/untar/.config.vsh.yaml
index 333e170..44cbc0f 100644
--- a/target/executable/io/untar/.config.vsh.yaml
+++ b/target/executable/io/untar/.config.vsh.yaml
@@ -153,9 +153,9 @@ build_info:
   output: "target/executable/io/untar"
   executable: "target/executable/io/untar/untar"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/executable/io/untar/untar b/target/executable/io/untar/untar
index b0f81e9..a236a65 100755
--- a/target/executable/io/untar/untar
+++ b/target/executable/io/untar/untar
@@ -476,9 +476,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component io untar"
-LABEL org.opencontainers.image.created="2025-03-04T05:45:47Z"
+LABEL org.opencontainers.image.created="2025-03-20T19:30:14Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="795abd68688f4f31b0587bc8e4a7de49b6c00825"
+LABEL org.opencontainers.image.revision="55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
diff --git a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
index ae2fd32..beab819 100644
--- a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
+++ b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
@@ -162,9 +162,9 @@ build_info:
   output: "target/nextflow/dataflow/combine_samples"
   executable: "target/nextflow/dataflow/combine_samples/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/nextflow/dataflow/combine_samples/main.nf b/target/nextflow/dataflow/combine_samples/main.nf
index 524bffd..436f930 100644
--- a/target/nextflow/dataflow/combine_samples/main.nf
+++ b/target/nextflow/dataflow/combine_samples/main.nf
@@ -3000,9 +3000,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/dataflow/combine_samples",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
index 4bc301a..23a932a 100644
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
@@ -138,9 +138,9 @@ build_info:
   output: "target/nextflow/dataflow/gather_fastqs_and_validate"
   executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
index 5e4edcc..1ee728e 100644
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
@@ -2973,9 +2973,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",
@@ -3051,8 +3051,8 @@ workflow run_wf {
               return true
             }
             // [Data], [BCLConvert_Data] for illumina
-            // [Samples] for Element Biosciences
-            if (header in ["Data", "Samples", "BCLConvert_Data"]) {
+            // [Samples] or sometimes [SAMPLES] for Element Biosciences
+            if (header.toLowerCase() in ["data", "samples", "bclconvert_data"]) {
               println "Found header [${header}], start parsing."
               start_parsing = true
               return
diff --git a/target/nextflow/demultiplex/.config.vsh.yaml b/target/nextflow/demultiplex/.config.vsh.yaml
index 35c7d0e..0b530f9 100644
--- a/target/nextflow/demultiplex/.config.vsh.yaml
+++ b/target/nextflow/demultiplex/.config.vsh.yaml
@@ -244,9 +244,9 @@ build_info:
   output: "target/nextflow/demultiplex"
   executable: "target/nextflow/demultiplex/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
   dependencies:
   - "target/nextflow/io/untar"
   - "target/nextflow/dataflow/gather_fastqs_and_validate"
diff --git a/target/nextflow/demultiplex/main.nf b/target/nextflow/demultiplex/main.nf
index 0bed088..de1cb63 100644
--- a/target/nextflow/demultiplex/main.nf
+++ b/target/nextflow/demultiplex/main.nf
@@ -3120,9 +3120,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/demultiplex",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
index 90e9752..dd91b04 100644
--- a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
@@ -146,9 +146,9 @@ build_info:
   output: "target/nextflow/io/interop_summary_to_csv"
   executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/nextflow/io/interop_summary_to_csv/main.nf b/target/nextflow/io/interop_summary_to_csv/main.nf
index d336198..a7b9fe6 100644
--- a/target/nextflow/io/interop_summary_to_csv/main.nf
+++ b/target/nextflow/io/interop_summary_to_csv/main.nf
@@ -2985,9 +2985,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/interop_summary_to_csv",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/io/publish/.config.vsh.yaml b/target/nextflow/io/publish/.config.vsh.yaml
index 05d4fad..a956635 100644
--- a/target/nextflow/io/publish/.config.vsh.yaml
+++ b/target/nextflow/io/publish/.config.vsh.yaml
@@ -196,9 +196,9 @@ build_info:
   output: "target/nextflow/io/publish"
   executable: "target/nextflow/io/publish/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/nextflow/io/publish/main.nf b/target/nextflow/io/publish/main.nf
index df1ac85..f7dd834 100644
--- a/target/nextflow/io/publish/main.nf
+++ b/target/nextflow/io/publish/main.nf
@@ -3044,9 +3044,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/publish",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/io/untar/.config.vsh.yaml b/target/nextflow/io/untar/.config.vsh.yaml
index b91e60f..05cc022 100644
--- a/target/nextflow/io/untar/.config.vsh.yaml
+++ b/target/nextflow/io/untar/.config.vsh.yaml
@@ -153,9 +153,9 @@ build_info:
   output: "target/nextflow/io/untar"
   executable: "target/nextflow/io/untar/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
 package_config:
   name: "demultiplex"
   version: "main"
diff --git a/target/nextflow/io/untar/main.nf b/target/nextflow/io/untar/main.nf
index 7f248bc..820f910 100644
--- a/target/nextflow/io/untar/main.nf
+++ b/target/nextflow/io/untar/main.nf
@@ -2997,9 +2997,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/untar",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/runner/.config.vsh.yaml b/target/nextflow/runner/.config.vsh.yaml
index d006c18..7036ae0 100644
--- a/target/nextflow/runner/.config.vsh.yaml
+++ b/target/nextflow/runner/.config.vsh.yaml
@@ -192,9 +192,9 @@ build_info:
   output: "target/nextflow/runner"
   executable: "target/nextflow/runner/main.nf"
   viash_version: "0.9.0"
-  git_commit: "795abd68688f4f31b0587bc8e4a7de49b6c00825"
+  git_commit: "55699d24c0ff8d88e572ccc1a5ebc40217bb9524"
   git_remote: "https://github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-18-g795abd6"
+  git_tag: "v0.1.1-19-g55699d2"
   dependencies:
   - "target/nextflow/demultiplex"
   - "target/nextflow/io/publish"
diff --git a/target/nextflow/runner/main.nf b/target/nextflow/runner/main.nf
index b9aab4b..1cb785f 100644
--- a/target/nextflow/runner/main.nf
+++ b/target/nextflow/runner/main.nf
@@ -3040,9 +3040,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/runner",
     "viash_version" : "0.9.0",
-    "git_commit" : "795abd68688f4f31b0587bc8e4a7de49b6c00825",
+    "git_commit" : "55699d24c0ff8d88e572ccc1a5ebc40217bb9524",
     "git_remote" : "https://github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-18-g795abd6"
+    "git_tag" : "v0.1.1-19-g55699d2"
   },
   "package_config" : {
     "name" : "demultiplex",