Build branch v0.3 with version v0.3.3 (e297e8f)

Build pipeline: viash-hub.demultiplex.v0.3-dd5mz Source commit: e297e8ff45 Source message: Bump version to v0.3.3
2024-12-19 15:56:52 +00:00
parent e5ae6d3bb5
commit e1af283efe
39 changed files with 584 additions and 301 deletions
--- a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "interop_summary_to_csv"
 namespace: "io"
-version: "v0.3.2"
+version: "v0.3.3"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -116,7 +116,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.2"
+  target_tag: "v0.3.3"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -141,12 +141,12 @@ build_info:
  output: "target/executable/io/interop_summary_to_csv"
  executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
  viash_version: "0.9.0"
-  git_commit: "7ad45f359753205547f96df54ee07733ece655e1"
-  git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
-  git_tag: "v0.3.1-3-g7ad45f3"
+  git_commit: "e297e8ff45464065384476fe521ab2700ec3739c"
+  git_remote: "https://x-access-token:ghs_44flLTQIYGBkc9xcwCZoLYe7mxXzgw1iszFO@github.com/viash-hub/demultiplex"
+  git_tag: "v0.3.2-4-ge297e8f"
 package_config:
  name: "demultiplex"
-  version: "v0.3.2"
+  version: "v0.3.3"
  description: "Demultiplexing pipeline\n"
  info:
    test_resources:
@@ -160,7 +160,7 @@ package_config:
    \ := '$id'\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.2'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.3'"
  keywords:
  - "bioinformatics"
  - "sequence"
--- a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
+++ b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# interop_summary_to_csv v0.3.2
+# interop_summary_to_csv v0.3.3
 # 
 # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "interop_summary_to_csv v0.3.2"
+  echo "interop_summary_to_csv v0.3.3"
  echo ""
  echo "Input arguments:"
  echo "    --input"
@@ -470,10 +470,10 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
 mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/

 LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
-LABEL org.opencontainers.image.created="2024-12-11T17:51:30Z"
+LABEL org.opencontainers.image.created="2024-12-19T15:42:23Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="7ad45f359753205547f96df54ee07733ece655e1"
-LABEL org.opencontainers.image.version="v0.3.2"
+LABEL org.opencontainers.image.revision="e297e8ff45464065384476fe521ab2700ec3739c"
+LABEL org.opencontainers.image.version="v0.3.3"

 VIASHDOCKER
  fi
@@ -609,7 +609,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "interop_summary_to_csv v0.3.2"
+            echo "interop_summary_to_csv v0.3.3"
            exit
            ;;
        --input)
@@ -733,7 +733,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/demultiplex/io/interop_summary_to_csv:v0.3.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/demultiplex/io/interop_summary_to_csv:v0.3.3'
  fi

  # print dockerfile
--- a/target/executable/io/publish/.config.vsh.yaml
+++ b/target/executable/io/publish/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "publish"
 namespace: "io"
-version: "v0.3.2"
+version: "v0.3.3"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -26,7 +26,17 @@ argument_groups:
    multiple_sep: ";"
  - type: "file"
    name: "--input_multiqc"
-    description: "Directory to write falco output to"
+    description: "Location where to write the MultiQC report to."
+    info: null
+    must_exist: true
+    create_parent: true
+    required: true
+    direction: "input"
+    multiple: false
+    multiple_sep: ";"
+  - type: "file"
+    name: "--input_run_information"
+    description: "Location where to write the run information to."
    info: null
    must_exist: true
    create_parent: true
@@ -69,6 +79,17 @@ argument_groups:
    direction: "output"
    multiple: false
    multiple_sep: ";"
+  - type: "file"
+    name: "--output_run_information"
+    info: null
+    default:
+    - "run_information.csv"
+    must_exist: true
+    create_parent: true
+    required: false
+    direction: "output"
+    multiple: false
+    multiple_sep: ";"
 resources:
 - type: "bash_script"
  path: "code.sh"
@@ -152,7 +173,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.2"
+  target_tag: "v0.3.3"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -170,12 +191,12 @@ build_info:
  output: "target/executable/io/publish"
  executable: "target/executable/io/publish/publish"
  viash_version: "0.9.0"
-  git_commit: "7ad45f359753205547f96df54ee07733ece655e1"
-  git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
-  git_tag: "v0.3.1-3-g7ad45f3"
+  git_commit: "e297e8ff45464065384476fe521ab2700ec3739c"
+  git_remote: "https://x-access-token:ghs_44flLTQIYGBkc9xcwCZoLYe7mxXzgw1iszFO@github.com/viash-hub/demultiplex"
+  git_tag: "v0.3.2-4-ge297e8f"
 package_config:
  name: "demultiplex"
-  version: "v0.3.2"
+  version: "v0.3.3"
  description: "Demultiplexing pipeline\n"
  info:
    test_resources:
@@ -189,7 +210,7 @@ package_config:
    \ := '$id'\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.2'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.3'"
  keywords:
  - "bioinformatics"
  - "sequence"
--- a/target/executable/io/publish/publish
+++ b/target/executable/io/publish/publish
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# publish v0.3.2
+# publish v0.3.3
 # 
 # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "publish v0.3.2"
+  echo "publish v0.3.3"
  echo ""
  echo "Publish the processed results of the run"
  echo ""
@@ -186,7 +186,11 @@ function ViashHelp {
  echo ""
  echo "    --input_multiqc"
  echo "        type: file, required parameter, file must exist"
-  echo "        Directory to write falco output to"
+  echo "        Location where to write the MultiQC report to."
+  echo ""
+  echo "    --input_run_information"
+  echo "        type: file, required parameter, file must exist"
+  echo "        Location where to write the run information to."
  echo ""
  echo "Output arguments:"
  echo "    --output"
@@ -200,6 +204,10 @@ function ViashHelp {
  echo "    --output_multiqc"
  echo "        type: file, output, file must exist"
  echo "        default: qc/multiqc_report.html"
+  echo ""
+  echo "    --output_run_information"
+  echo "        type: file, output, file must exist"
+  echo "        default: run_information.csv"
 }

 # initialise variables
@@ -482,10 +490,10 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io publish"
-LABEL org.opencontainers.image.created="2024-12-11T17:51:30Z"
+LABEL org.opencontainers.image.created="2024-12-19T15:42:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="7ad45f359753205547f96df54ee07733ece655e1"
-LABEL org.opencontainers.image.version="v0.3.2"
+LABEL org.opencontainers.image.revision="e297e8ff45464065384476fe521ab2700ec3739c"
+LABEL org.opencontainers.image.version="v0.3.3"

 VIASHDOCKER
  fi
@@ -621,7 +629,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "publish v0.3.2"
+            echo "publish v0.3.3"
            exit
            ;;
        --input)
@@ -657,6 +665,17 @@ while [[ $# -gt 0 ]]; do
            VIASH_PAR_INPUT_MULTIQC=$(ViashRemoveFlags "$1")
            shift 1
            ;;
+        --input_run_information)
+            [ -n "$VIASH_PAR_INPUT_RUN_INFORMATION" ] && ViashError Bad arguments for option \'--input_run_information\': \'$VIASH_PAR_INPUT_RUN_INFORMATION\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_INPUT_RUN_INFORMATION="$2"
+            [ $# -lt 2 ] && ViashError Not enough arguments passed to --input_run_information. Use "--help" to get more information on the parameters. && exit 1
+            shift 2
+            ;;
+        --input_run_information=*)
+            [ -n "$VIASH_PAR_INPUT_RUN_INFORMATION" ] && ViashError Bad arguments for option \'--input_run_information=*\': \'$VIASH_PAR_INPUT_RUN_INFORMATION\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_INPUT_RUN_INFORMATION=$(ViashRemoveFlags "$1")
+            shift 1
+            ;;
        --output)
            [ -n "$VIASH_PAR_OUTPUT" ] && ViashError Bad arguments for option \'--output\': \'$VIASH_PAR_OUTPUT\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
            VIASH_PAR_OUTPUT="$2"
@@ -690,6 +709,17 @@ while [[ $# -gt 0 ]]; do
            VIASH_PAR_OUTPUT_MULTIQC=$(ViashRemoveFlags "$1")
            shift 1
            ;;
+        --output_run_information)
+            [ -n "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ] && ViashError Bad arguments for option \'--output_run_information\': \'$VIASH_PAR_OUTPUT_RUN_INFORMATION\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_OUTPUT_RUN_INFORMATION="$2"
+            [ $# -lt 2 ] && ViashError Not enough arguments passed to --output_run_information. Use "--help" to get more information on the parameters. && exit 1
+            shift 2
+            ;;
+        --output_run_information=*)
+            [ -n "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ] && ViashError Bad arguments for option \'--output_run_information=*\': \'$VIASH_PAR_OUTPUT_RUN_INFORMATION\' \& \'$2\' - you should provide exactly one argument for this option. && exit 1
+            VIASH_PAR_OUTPUT_RUN_INFORMATION=$(ViashRemoveFlags "$1")
+            shift 1
+            ;;
        ---engine)
            VIASH_ENGINE_ID="$2"
            shift 2
@@ -778,7 +808,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/demultiplex/io/publish:v0.3.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/demultiplex/io/publish:v0.3.3'
  fi

  # print dockerfile
@@ -874,6 +904,10 @@ if [ -z ${VIASH_PAR_INPUT_MULTIQC+x} ]; then
  ViashError '--input_multiqc' is a required argument. Use "--help" to get more information on the parameters.
  exit 1
 fi
+if [ -z ${VIASH_PAR_INPUT_RUN_INFORMATION+x} ]; then
+  ViashError '--input_run_information' is a required argument. Use "--help" to get more information on the parameters.
+  exit 1
+fi
 if [ -z ${VIASH_META_NAME+x} ]; then
  ViashError 'name' is a required argument. Use "--help" to get more information on the parameters.
  exit 1
@@ -909,6 +943,9 @@ fi
 if [ -z ${VIASH_PAR_OUTPUT_MULTIQC+x} ]; then
  VIASH_PAR_OUTPUT_MULTIQC="qc/multiqc_report.html"
 fi
+if [ -z ${VIASH_PAR_OUTPUT_RUN_INFORMATION+x} ]; then
+  VIASH_PAR_OUTPUT_RUN_INFORMATION="run_information.csv"
+fi

 # check whether required files exist
 if [ ! -z "$VIASH_PAR_INPUT" ] && [ ! -e "$VIASH_PAR_INPUT" ]; then
@@ -923,6 +960,10 @@ if [ ! -z "$VIASH_PAR_INPUT_MULTIQC" ] && [ ! -e "$VIASH_PAR_INPUT_MULTIQC" ]; t
  ViashError "Input file '$VIASH_PAR_INPUT_MULTIQC' does not exist."
  exit 1
 fi
+if [ ! -z "$VIASH_PAR_INPUT_RUN_INFORMATION" ] && [ ! -e "$VIASH_PAR_INPUT_RUN_INFORMATION" ]; then
+  ViashError "Input file '$VIASH_PAR_INPUT_RUN_INFORMATION' does not exist."
+  exit 1
+fi

 # check whether parameters values are of the right type
 if [[ -n "$VIASH_META_CPUS" ]]; then
@@ -1008,6 +1049,9 @@ fi
 if [ ! -z "$VIASH_PAR_OUTPUT_MULTIQC" ] && [ ! -d "$(dirname "$VIASH_PAR_OUTPUT_MULTIQC")" ]; then
  mkdir -p "$(dirname "$VIASH_PAR_OUTPUT_MULTIQC")"
 fi
+if [ ! -z "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ] && [ ! -d "$(dirname "$VIASH_PAR_OUTPUT_RUN_INFORMATION")" ]; then
+  mkdir -p "$(dirname "$VIASH_PAR_OUTPUT_RUN_INFORMATION")"
+fi

 if  [ "$VIASH_ENGINE_ID" == "native" ]  ; then
  if [ "$VIASH_MODE" == "run" ]; then
@@ -1033,6 +1077,10 @@ if [ ! -z "$VIASH_PAR_INPUT_MULTIQC" ]; then
  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_PAR_INPUT_MULTIQC")" )
  VIASH_PAR_INPUT_MULTIQC=$(ViashDockerAutodetectMount "$VIASH_PAR_INPUT_MULTIQC")
 fi
+if [ ! -z "$VIASH_PAR_INPUT_RUN_INFORMATION" ]; then
+  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_PAR_INPUT_RUN_INFORMATION")" )
+  VIASH_PAR_INPUT_RUN_INFORMATION=$(ViashDockerAutodetectMount "$VIASH_PAR_INPUT_RUN_INFORMATION")
+fi
 if [ ! -z "$VIASH_PAR_OUTPUT" ]; then
  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_PAR_OUTPUT")" )
  VIASH_PAR_OUTPUT=$(ViashDockerAutodetectMount "$VIASH_PAR_OUTPUT")
@@ -1048,6 +1096,11 @@ if [ ! -z "$VIASH_PAR_OUTPUT_MULTIQC" ]; then
  VIASH_PAR_OUTPUT_MULTIQC=$(ViashDockerAutodetectMount "$VIASH_PAR_OUTPUT_MULTIQC")
  VIASH_CHOWN_VARS+=( "$VIASH_PAR_OUTPUT_MULTIQC" )
 fi
+if [ ! -z "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ]; then
+  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_PAR_OUTPUT_RUN_INFORMATION")" )
+  VIASH_PAR_OUTPUT_RUN_INFORMATION=$(ViashDockerAutodetectMount "$VIASH_PAR_OUTPUT_RUN_INFORMATION")
+  VIASH_CHOWN_VARS+=( "$VIASH_PAR_OUTPUT_RUN_INFORMATION" )
+fi
 if [ ! -z "$VIASH_META_RESOURCES_DIR" ]; then
  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_META_RESOURCES_DIR")" )
  VIASH_META_RESOURCES_DIR=$(ViashDockerAutodetectMount "$VIASH_META_RESOURCES_DIR")
@@ -1120,9 +1173,11 @@ cat > "\$tempscript" << 'VIASHMAIN'
 $( if [ ! -z ${VIASH_PAR_INPUT+x} ]; then echo "${VIASH_PAR_INPUT}" | sed "s#'#'\"'\"'#g;s#.*#par_input='&'#" ; else echo "# par_input="; fi )
 $( if [ ! -z ${VIASH_PAR_INPUT_FALCO+x} ]; then echo "${VIASH_PAR_INPUT_FALCO}" | sed "s#'#'\"'\"'#g;s#.*#par_input_falco='&'#" ; else echo "# par_input_falco="; fi )
 $( if [ ! -z ${VIASH_PAR_INPUT_MULTIQC+x} ]; then echo "${VIASH_PAR_INPUT_MULTIQC}" | sed "s#'#'\"'\"'#g;s#.*#par_input_multiqc='&'#" ; else echo "# par_input_multiqc="; fi )
+$( if [ ! -z ${VIASH_PAR_INPUT_RUN_INFORMATION+x} ]; then echo "${VIASH_PAR_INPUT_RUN_INFORMATION}" | sed "s#'#'\"'\"'#g;s#.*#par_input_run_information='&'#" ; else echo "# par_input_run_information="; fi )
 $( if [ ! -z ${VIASH_PAR_OUTPUT+x} ]; then echo "${VIASH_PAR_OUTPUT}" | sed "s#'#'\"'\"'#g;s#.*#par_output='&'#" ; else echo "# par_output="; fi )
 $( if [ ! -z ${VIASH_PAR_OUTPUT_FALCO+x} ]; then echo "${VIASH_PAR_OUTPUT_FALCO}" | sed "s#'#'\"'\"'#g;s#.*#par_output_falco='&'#" ; else echo "# par_output_falco="; fi )
 $( if [ ! -z ${VIASH_PAR_OUTPUT_MULTIQC+x} ]; then echo "${VIASH_PAR_OUTPUT_MULTIQC}" | sed "s#'#'\"'\"'#g;s#.*#par_output_multiqc='&'#" ; else echo "# par_output_multiqc="; fi )
+$( if [ ! -z ${VIASH_PAR_OUTPUT_RUN_INFORMATION+x} ]; then echo "${VIASH_PAR_OUTPUT_RUN_INFORMATION}" | sed "s#'#'\"'\"'#g;s#.*#par_output_run_information='&'#" ; else echo "# par_output_run_information="; fi )
 $( if [ ! -z ${VIASH_META_NAME+x} ]; then echo "${VIASH_META_NAME}" | sed "s#'#'\"'\"'#g;s#.*#meta_name='&'#" ; else echo "# meta_name="; fi )
 $( if [ ! -z ${VIASH_META_FUNCTIONALITY_NAME+x} ]; then echo "${VIASH_META_FUNCTIONALITY_NAME}" | sed "s#'#'\"'\"'#g;s#.*#meta_functionality_name='&'#" ; else echo "# meta_functionality_name="; fi )
 $( if [ ! -z ${VIASH_META_RESOURCES_DIR+x} ]; then echo "${VIASH_META_RESOURCES_DIR}" | sed "s#'#'\"'\"'#g;s#.*#meta_resources_dir='&'#" ; else echo "# meta_resources_dir="; fi )
@@ -1145,34 +1200,30 @@ $( if [ ! -z ${VIASH_META_MEMORY_PIB+x} ]; then echo "${VIASH_META_MEMORY_PIB}"
 ## VIASH END
 #!/bin/bash

-echo "Publishing \$par_input -> \$par_output"
-echo "Publishing \$par_input_falco -> \$par_output_falco"
-echo "Publishing \$par_input_multiqc -> \$par_output_multiqc"
+set -eo pipefail

-echo
-echo "Creating directory if it does not exist:"
-mkdir -p \$(dirname "\$par_output") && echo "Containing directory \$par_output created"
-mkdir -p \$(dirname "\$par_output_falco") && echo "Containing directory \$par_output_falco created"
-mkdir -p \$(dirname "\$par_output_multiqc") && echo "Containing directory \$par_output_multiqc created"
+declare -A input_output_mapping=(["par_input"]="par_output" 
+                                 ["par_input_falco"]="par_output_falco" 
+                                 ["par_input_multiqc"]="par_output_multiqc"
+                                 ["par_input_run_information"]="par_output_run_information"
+                                )

-echo
-echo "Copying files..."
-cp -rL "\$par_input" "\$par_output"
-cp -rL "\$par_input_falco" "\$par_output_falco"
-cp -rL "\$par_input_multiqc" "\$par_output_multiqc"
+for input_argument_name in "\${!input_output_mapping[@]}"
+do
+    input_location="\${!input_argument_name}"
+    output_argument_name="\${input_output_mapping[\$input_argument_name]}"
+    output_location="\${!output_argument_name}"
+    echo "Publishing \$input_location -> \$output_location"

-echo
-echo "Output files:"
-echo "par_output:"
-ls "\$par_output"
+    echo "Creating directory if it does not exist."
+    mkdir -p \$(dirname "\$output_location") && echo "Containing directory \$output_location created"

-echo
-echo "par_output_falco:"
-ls "\$par_output_falco"
+    echo "Copying files..."
+    cp -rL "\$input_location" "\$output_location"

-echo
-echo "par_output_multiqc:"
-ls "\$par_output_multiqc"
+    echo "Output files for \$output_location:"
+    ls "\$output_location"
+done
 VIASHMAIN
 bash "\$tempscript" &
 wait "\$!"
@@ -1192,6 +1243,9 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
  if [ ! -z "$VIASH_PAR_INPUT_MULTIQC" ]; then
    VIASH_PAR_INPUT_MULTIQC=$(ViashDockerStripAutomount "$VIASH_PAR_INPUT_MULTIQC")
  fi
+  if [ ! -z "$VIASH_PAR_INPUT_RUN_INFORMATION" ]; then
+    VIASH_PAR_INPUT_RUN_INFORMATION=$(ViashDockerStripAutomount "$VIASH_PAR_INPUT_RUN_INFORMATION")
+  fi
  if [ ! -z "$VIASH_PAR_OUTPUT" ]; then
    VIASH_PAR_OUTPUT=$(ViashDockerStripAutomount "$VIASH_PAR_OUTPUT")
  fi
@@ -1201,6 +1255,9 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
  if [ ! -z "$VIASH_PAR_OUTPUT_MULTIQC" ]; then
    VIASH_PAR_OUTPUT_MULTIQC=$(ViashDockerStripAutomount "$VIASH_PAR_OUTPUT_MULTIQC")
  fi
+  if [ ! -z "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ]; then
+    VIASH_PAR_OUTPUT_RUN_INFORMATION=$(ViashDockerStripAutomount "$VIASH_PAR_OUTPUT_RUN_INFORMATION")
+  fi
  if [ ! -z "$VIASH_META_RESOURCES_DIR" ]; then
    VIASH_META_RESOURCES_DIR=$(ViashDockerStripAutomount "$VIASH_META_RESOURCES_DIR")
  fi
@@ -1229,6 +1286,10 @@ if [ ! -z "$VIASH_PAR_OUTPUT_MULTIQC" ] && [ ! -e "$VIASH_PAR_OUTPUT_MULTIQC" ];
  ViashError "Output file '$VIASH_PAR_OUTPUT_MULTIQC' does not exist."
  exit 1
 fi
+if [ ! -z "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ] && [ ! -e "$VIASH_PAR_OUTPUT_RUN_INFORMATION" ]; then
+  ViashError "Output file '$VIASH_PAR_OUTPUT_RUN_INFORMATION' does not exist."
+  exit 1
+fi


 exit 0
--- a/target/executable/io/untar/.config.vsh.yaml
+++ b/target/executable/io/untar/.config.vsh.yaml
@@ -1,6 +1,6 @@
 name: "untar"
 namespace: "io"
-version: "v0.3.2"
+version: "v0.3.3"
 argument_groups:
 - name: "Input arguments"
  arguments:
@@ -130,7 +130,7 @@ engines:
  id: "docker"
  image: "debian:stable-slim"
  target_registry: "images.viash-hub.com"
-  target_tag: "v0.3.2"
+  target_tag: "v0.3.3"
  namespace_separator: "/"
  setup:
  - type: "apt"
@@ -148,12 +148,12 @@ build_info:
  output: "target/executable/io/untar"
  executable: "target/executable/io/untar/untar"
  viash_version: "0.9.0"
-  git_commit: "7ad45f359753205547f96df54ee07733ece655e1"
-  git_remote: "https://x-access-token:ghs_Yd3of90BXneMupSK4qIbEdGLmCGJet1c95Fo@github.com/viash-hub/demultiplex"
-  git_tag: "v0.3.1-3-g7ad45f3"
+  git_commit: "e297e8ff45464065384476fe521ab2700ec3739c"
+  git_remote: "https://x-access-token:ghs_44flLTQIYGBkc9xcwCZoLYe7mxXzgw1iszFO@github.com/viash-hub/demultiplex"
+  git_tag: "v0.3.2-4-ge297e8f"
 package_config:
  name: "demultiplex"
-  version: "v0.3.2"
+  version: "v0.3.3"
  description: "Demultiplexing pipeline\n"
  info:
    test_resources:
@@ -167,7 +167,7 @@ package_config:
    \ := '$id'\n"
  - ".engines += { type: \"native\" }"
  - ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
-  - ".engines[.type == 'docker'].target_tag := 'v0.3.2'"
+  - ".engines[.type == 'docker'].target_tag := 'v0.3.3'"
  keywords:
  - "bioinformatics"
  - "sequence"
--- a/target/executable/io/untar/untar
+++ b/target/executable/io/untar/untar
@@ -1,6 +1,6 @@
 #!/usr/bin/env bash

-# untar v0.3.2
+# untar v0.3.3
 # 
 # This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"

 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "untar v0.3.2"
+  echo "untar v0.3.3"
  echo ""
  echo "Unpack a .tar file. When the contents of the .tar file is just a single"
  echo "directory,"
@@ -476,10 +476,10 @@ RUN apt-get update && \
  rm -rf /var/lib/apt/lists/*

 LABEL org.opencontainers.image.description="Companion container for running component io untar"
-LABEL org.opencontainers.image.created="2024-12-11T17:51:30Z"
+LABEL org.opencontainers.image.created="2024-12-19T15:42:24Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="7ad45f359753205547f96df54ee07733ece655e1"
-LABEL org.opencontainers.image.version="v0.3.2"
+LABEL org.opencontainers.image.revision="e297e8ff45464065384476fe521ab2700ec3739c"
+LABEL org.opencontainers.image.version="v0.3.3"

 VIASHDOCKER
  fi
@@ -615,7 +615,7 @@ while [[ $# -gt 0 ]]; do
            shift 1
            ;;
        --version)
-            echo "untar v0.3.2"
+            echo "untar v0.3.3"
            exit
            ;;
        --input)
@@ -745,7 +745,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then

  # determine docker image id
  if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/demultiplex/io/untar:v0.3.2'
+    VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/demultiplex/io/untar:v0.3.3'
  fi

  # print dockerfile