diff --git a/nextflow.config b/nextflow.config
index f063325..6536fa9 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -10,4 +10,3 @@ process {
   }
 }
 
-
diff --git a/src/runner/main.nf b/src/runner/main.nf
index 210ee95..5c08622 100644
--- a/src/runner/main.nf
+++ b/src/runner/main.nf
@@ -1,6 +1,6 @@
 def date = new Date().format('yyyyMMdd_hhmmss')
 
-def viash_config = java.nio.file.Paths.get("$projectDir/../../").toAbsolutePath().normalize().toString() + "/_viash.yaml"
+def viash_config = java.nio.file.Paths.get("$projectDir/../../../").toAbsolutePath().normalize().toString() + "/_viash.yaml"
 def version = get_version(file(viash_config).text)
 
 workflow run_wf {
@@ -24,10 +24,17 @@ workflow run_wf {
         fromState: { id, state ->
           def id1 = (params.add_date_time) ? "${id}_${date}" : id
           def id2 = (params.add_workflow_id) ? "${id1}_demultiplex_${version}" : id1
+
           def fastq_output_1 = (id == "run") ? state.fastq_output : "${id2}/" + state.fastq_output
           def falco_output_1 = (id == "run") ? state.falco_output : "${id2}/" + state.falco_output
           def multiqc_output_1 = (id == "run") ? state.multiqc_output : "${id2}/" + state.multiqc_output
-          println("Publising to ${params.publish_dir}/${id2}")
+
+          if (id == "run") {
+            println("Publising to ${params.publish_dir}")
+          } else {
+            println("Publising to ${params.publish_dir}/${id2}")
+          }
+
           [
             input: state.output,
             input_falco: state.output_falco,
diff --git a/src/runner/nextflow.config b/src/runner/nextflow.config
index 54df14a..e09bb57 100644
--- a/src/runner/nextflow.config
+++ b/src/runner/nextflow.config
@@ -2,15 +2,5 @@ manifest {
   nextflowVersion = '!>=20.12.1-edge'
 }
 
-params {
-  rootDir = java.nio.file.Paths.get("$projectDir/../../").toAbsolutePath().normalize().toString()
-}
-
-process {
-  withName: publishStatesProc {
-    publishDir = [ enabled: false ]
-  }
-}
-
 // include common settings
 includeConfig("${params.rootDir}/src/config/labels.config")
diff --git a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
index da96bc0..ce8a1b6 100644
--- a/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/executable/io/interop_summary_to_csv/.config.vsh.yaml
@@ -141,9 +141,9 @@ build_info:
   output: "target/executable/io/interop_summary_to_csv"
   executable: "target/executable/io/interop_summary_to_csv/interop_summary_to_csv"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
index a2463b9..a03c70a 100755
--- a/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
+++ b/target/executable/io/interop_summary_to_csv/interop_summary_to_csv
@@ -470,9 +470,9 @@ tar -C /tmp/ --no-same-owner --no-same-permissions -xvf /tmp/interop.tar.gz && \
 mv /tmp/interop-1.3.1-Linux-GNU/bin/index-summary /tmp/interop-1.3.1-Linux-GNU/bin/summary /usr/local/bin/
 
 LABEL org.opencontainers.image.description="Companion container for running component io interop_summary_to_csv"
-LABEL org.opencontainers.image.created="2024-12-10T14:26:52Z"
+LABEL org.opencontainers.image.created="2024-12-10T14:52:35Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="850924de0ce1af49300d7f0b3dbe620e4f97c916"
+LABEL org.opencontainers.image.revision="4245b40c8f598c3ed1f977a8f07633c94db034b8"
 LABEL org.opencontainers.image.version="outflow"
 
 VIASHDOCKER
diff --git a/target/executable/io/publish/.config.vsh.yaml b/target/executable/io/publish/.config.vsh.yaml
index 89441c9..d3303db 100644
--- a/target/executable/io/publish/.config.vsh.yaml
+++ b/target/executable/io/publish/.config.vsh.yaml
@@ -169,9 +169,9 @@ build_info:
   output: "target/executable/io/publish"
   executable: "target/executable/io/publish/publish"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/executable/io/publish/publish b/target/executable/io/publish/publish
index abd243b..4a02c84 100755
--- a/target/executable/io/publish/publish
+++ b/target/executable/io/publish/publish
@@ -479,9 +479,9 @@ FROM debian:stable-20220912
 ENTRYPOINT []
 RUN apt update && apt install -y procps
 LABEL org.opencontainers.image.description="Companion container for running component io publish"
-LABEL org.opencontainers.image.created="2024-12-10T14:26:52Z"
+LABEL org.opencontainers.image.created="2024-12-10T14:52:35Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="850924de0ce1af49300d7f0b3dbe620e4f97c916"
+LABEL org.opencontainers.image.revision="4245b40c8f598c3ed1f977a8f07633c94db034b8"
 LABEL org.opencontainers.image.version="outflow"
 
 VIASHDOCKER
diff --git a/target/executable/io/untar/.config.vsh.yaml b/target/executable/io/untar/.config.vsh.yaml
index 5e5fb22..74d2038 100644
--- a/target/executable/io/untar/.config.vsh.yaml
+++ b/target/executable/io/untar/.config.vsh.yaml
@@ -148,9 +148,9 @@ build_info:
   output: "target/executable/io/untar"
   executable: "target/executable/io/untar/untar"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/executable/io/untar/untar b/target/executable/io/untar/untar
index ac758b7..f46720b 100755
--- a/target/executable/io/untar/untar
+++ b/target/executable/io/untar/untar
@@ -476,9 +476,9 @@ RUN apt-get update && \
   rm -rf /var/lib/apt/lists/*
 
 LABEL org.opencontainers.image.description="Companion container for running component io untar"
-LABEL org.opencontainers.image.created="2024-12-10T14:26:52Z"
+LABEL org.opencontainers.image.created="2024-12-10T14:52:35Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/demultiplex"
-LABEL org.opencontainers.image.revision="850924de0ce1af49300d7f0b3dbe620e4f97c916"
+LABEL org.opencontainers.image.revision="4245b40c8f598c3ed1f977a8f07633c94db034b8"
 LABEL org.opencontainers.image.version="outflow"
 
 VIASHDOCKER
diff --git a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
index 0ed2d2a..144cbeb 100644
--- a/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
+++ b/target/nextflow/dataflow/combine_samples/.config.vsh.yaml
@@ -139,9 +139,9 @@ build_info:
   output: "target/nextflow/dataflow/combine_samples"
   executable: "target/nextflow/dataflow/combine_samples/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/nextflow/dataflow/combine_samples/main.nf b/target/nextflow/dataflow/combine_samples/main.nf
index 8184fb4..d16efe1 100644
--- a/target/nextflow/dataflow/combine_samples/main.nf
+++ b/target/nextflow/dataflow/combine_samples/main.nf
@@ -2972,9 +2972,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/dataflow/combine_samples",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
index f500c7a..f757274 100644
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/.config.vsh.yaml
@@ -133,9 +133,9 @@ build_info:
   output: "target/nextflow/dataflow/gather_fastqs_and_validate"
   executable: "target/nextflow/dataflow/gather_fastqs_and_validate/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
index 513e846..b9f99ad 100644
--- a/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
+++ b/target/nextflow/dataflow/gather_fastqs_and_validate/main.nf
@@ -2965,9 +2965,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/dataflow/gather_fastqs_and_validate",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/demultiplex/.config.vsh.yaml b/target/nextflow/demultiplex/.config.vsh.yaml
index 738aeda..94cd096 100644
--- a/target/nextflow/demultiplex/.config.vsh.yaml
+++ b/target/nextflow/demultiplex/.config.vsh.yaml
@@ -220,9 +220,9 @@ build_info:
   output: "target/nextflow/demultiplex"
   executable: "target/nextflow/demultiplex/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
   dependencies:
   - "target/nextflow/io/untar"
   - "target/nextflow/dataflow/gather_fastqs_and_validate"
diff --git a/target/nextflow/demultiplex/main.nf b/target/nextflow/demultiplex/main.nf
index ad219bf..dd2afaf 100644
--- a/target/nextflow/demultiplex/main.nf
+++ b/target/nextflow/demultiplex/main.nf
@@ -3088,9 +3088,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/demultiplex",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
index d3690e3..145b439 100644
--- a/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
+++ b/target/nextflow/io/interop_summary_to_csv/.config.vsh.yaml
@@ -141,9 +141,9 @@ build_info:
   output: "target/nextflow/io/interop_summary_to_csv"
   executable: "target/nextflow/io/interop_summary_to_csv/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/nextflow/io/interop_summary_to_csv/main.nf b/target/nextflow/io/interop_summary_to_csv/main.nf
index 5ac6737..4ae289f 100644
--- a/target/nextflow/io/interop_summary_to_csv/main.nf
+++ b/target/nextflow/io/interop_summary_to_csv/main.nf
@@ -2977,9 +2977,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/interop_summary_to_csv",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/io/publish/.config.vsh.yaml b/target/nextflow/io/publish/.config.vsh.yaml
index e8a0c0b..93d9edf 100644
--- a/target/nextflow/io/publish/.config.vsh.yaml
+++ b/target/nextflow/io/publish/.config.vsh.yaml
@@ -169,9 +169,9 @@ build_info:
   output: "target/nextflow/io/publish"
   executable: "target/nextflow/io/publish/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/nextflow/io/publish/main.nf b/target/nextflow/io/publish/main.nf
index 45869b3..7e83dff 100644
--- a/target/nextflow/io/publish/main.nf
+++ b/target/nextflow/io/publish/main.nf
@@ -3011,9 +3011,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/publish",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/io/untar/.config.vsh.yaml b/target/nextflow/io/untar/.config.vsh.yaml
index 84ad239..3e7dd86 100644
--- a/target/nextflow/io/untar/.config.vsh.yaml
+++ b/target/nextflow/io/untar/.config.vsh.yaml
@@ -148,9 +148,9 @@ build_info:
   output: "target/nextflow/io/untar"
   executable: "target/nextflow/io/untar/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
 package_config:
   name: "demultiplex"
   version: "outflow"
diff --git a/target/nextflow/io/untar/main.nf b/target/nextflow/io/untar/main.nf
index 587dbfc..1490e82 100644
--- a/target/nextflow/io/untar/main.nf
+++ b/target/nextflow/io/untar/main.nf
@@ -2989,9 +2989,9 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/io/untar",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
diff --git a/target/nextflow/runner/.config.vsh.yaml b/target/nextflow/runner/.config.vsh.yaml
index c4192f7..be04059 100644
--- a/target/nextflow/runner/.config.vsh.yaml
+++ b/target/nextflow/runner/.config.vsh.yaml
@@ -156,9 +156,9 @@ build_info:
   output: "target/nextflow/runner"
   executable: "target/nextflow/runner/main.nf"
   viash_version: "0.9.0"
-  git_commit: "850924de0ce1af49300d7f0b3dbe620e4f97c916"
-  git_remote: "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex"
-  git_tag: "v0.1.1-16-g850924d"
+  git_commit: "4245b40c8f598c3ed1f977a8f07633c94db034b8"
+  git_remote: "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex"
+  git_tag: "v0.1.1-17-g4245b40"
   dependencies:
   - "target/nextflow/demultiplex"
   - "target/nextflow/io/publish"
diff --git a/target/nextflow/runner/main.nf b/target/nextflow/runner/main.nf
index ed7ba39..71ef9f1 100644
--- a/target/nextflow/runner/main.nf
+++ b/target/nextflow/runner/main.nf
@@ -3003,9 +3003,9 @@ meta = [
     "engine" : "native|native",
     "output" : "target/nextflow/runner",
     "viash_version" : "0.9.0",
-    "git_commit" : "850924de0ce1af49300d7f0b3dbe620e4f97c916",
-    "git_remote" : "https://x-access-token:ghs_In7H7ob9B5hTOzNDr8gE6y2z2kDr5e3ZuuxO@github.com/viash-hub/demultiplex",
-    "git_tag" : "v0.1.1-16-g850924d"
+    "git_commit" : "4245b40c8f598c3ed1f977a8f07633c94db034b8",
+    "git_remote" : "https://x-access-token:ghs_sB7wMG2xwNdg7QnND7N1smsoVpwFO11EH6hM@github.com/viash-hub/demultiplex",
+    "git_tag" : "v0.1.1-17-g4245b40"
   },
   "package_config" : {
     "name" : "demultiplex",
@@ -3053,7 +3053,7 @@ include { publish } from "${meta.resources_dir}/../../nextflow/io/publish/main.n
 // user-provided Nextflow code
 def date = new Date().format('yyyyMMdd_hhmmss')
 
-def viash_config = java.nio.file.Paths.get("$projectDir/../../").toAbsolutePath().normalize().toString() + "/_viash.yaml"
+def viash_config = java.nio.file.Paths.get("$projectDir/../../../").toAbsolutePath().normalize().toString() + "/_viash.yaml"
 def version = get_version(file(viash_config).text)
 
 workflow run_wf {
@@ -3077,10 +3077,17 @@ workflow run_wf {
         fromState: { id, state ->
           def id1 = (params.add_date_time) ? "${id}_${date}" : id
           def id2 = (params.add_workflow_id) ? "${id1}_demultiplex_${version}" : id1
+
           def fastq_output_1 = (id == "run") ? state.fastq_output : "${id2}/" + state.fastq_output
           def falco_output_1 = (id == "run") ? state.falco_output : "${id2}/" + state.falco_output
           def multiqc_output_1 = (id == "run") ? state.multiqc_output : "${id2}/" + state.multiqc_output
-          println("Publising to ${params.publish_dir}/${id2}")
+
+          if (id == "run") {
+            println("Publising to ${params.publish_dir}")
+          } else {
+            println("Publising to ${params.publish_dir}/${id2}")
+          }
+
           [
             input: state.output,
             input_falco: state.output_falco,