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Build branch main with version main (6e6be28)

Browse Source 
Build pipeline: viash-hub.demultiplex.main-wmjf8

Source commit: 6e6be28b85

Source message: Prepare CHANGELOG for release 0.2.0
This commit is contained in:
CI
2024-12-05 10:37:33 +00:00
parent 304b1d24b3
commit fcc3a4d62e
44 changed files with 5504 additions and 256 deletions
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10
target/nextflow/dataflow/combine_samples/.config.vsh.yaml
View File

@@ -19,7 +19,7 @@ argument_groups:
create_parent: true
required: true
direction: "input"
multiple: false
multiple: true
multiple_sep: ";"
- type: "file"
name: "--reverse_input"
@@ -28,7 +28,7 @@ argument_groups:
create_parent: true
required: false
direction: "input"
multiple: false
multiple: true
multiple_sep: ";"
- name: "Output arguments"
arguments:
@@ -139,9 +139,9 @@ build_info:
output: "target/nextflow/dataflow/combine_samples"
executable: "target/nextflow/dataflow/combine_samples/main.nf"
viash_version: "0.9.0"
git_commit: "5cb13230bf682321226addce896a3015e8864913"
git_remote: "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-3-g5cb1323"
git_commit: "6e6be28b85ab619214ae05a017a33498c0dc8890"
git_remote: "https://x-access-token:ghs_iopCikoFK5KlWGbHHLIwAf82AMtbiI0fzew1@github.com/viash-hub/demultiplex"
git_tag: "v0.1.1-5-g6e6be28"
package_config:
name: "demultiplex"
version: "main"

14
target/nextflow/dataflow/combine_samples/main.nf
View File

@@ -2827,7 +2827,7 @@ meta = [
"create_parent" : true,
"required" : true,
"direction" : "input",
"multiple" : false,
"multiple" : true,
"multiple_sep" : ";"
},
{
@@ -2837,7 +2837,7 @@ meta = [
"create_parent" : true,
"required" : false,
"direction" : "input",
"multiple" : false,
"multiple" : true,
"multiple_sep" : ";"
}
]
@@ -2972,9 +2972,9 @@ meta = [
"engine" : "native|native",
"output" : "target/nextflow/dataflow/combine_samples",
"viash_version" : "0.9.0",
"git_commit" : "5cb13230bf682321226addce896a3015e8864913",
"git_remote" : "https://x-access-token:ghs_x4A4kChpmjRCoWA3E68PwNsGJxIsF40DBeTf@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-3-g5cb1323"
"git_commit" : "6e6be28b85ab619214ae05a017a33498c0dc8890",
"git_remote" : "https://x-access-token:ghs_iopCikoFK5KlWGbHHLIwAf82AMtbiI0fzew1@github.com/viash-hub/demultiplex",
"git_tag" : "v0.1.1-5-g6e6be28"
},
"package_config" : {
"name" : "demultiplex",
@@ -3031,8 +3031,8 @@ workflow run_wf {
| groupTuple(by: 0, sort: "hash")
| map {run_id, states ->
// Gather the following state for all samples
def forward_fastqs = states.collect{it.forward_input}
def reverse_fastqs = states.collect{it.reverse_input}.findAll{it != null}
def forward_fastqs = states.collect{it.forward_input}.flatten()
def reverse_fastqs = states.collect{it.reverse_input}.findAll{it != null}.flatten()
def resultState = [
"output_forward": forward_fastqs,

12
target/nextflow/dataflow/combine_samples/nextflow_schema.json
View File

@@ -27,8 +27,8 @@
"forward_input": {
"type":
"string",
"description": "Type: `file`, required. ",
"help_text": "Type: `file`, required. "
"description": "Type: List of `file`, required, multiple_sep: `\";\"`. ",
"help_text": "Type: List of `file`, required, multiple_sep: `\";\"`. "
}
@@ -37,8 +37,8 @@
"reverse_input": {
"type":
"string",
"description": "Type: `file`. ",
"help_text": "Type: `file`. "
"description": "Type: List of `file`, multiple_sep: `\";\"`. ",
"help_text": "Type: List of `file`, multiple_sep: `\";\"`. "
}
@@ -60,7 +60,7 @@
"description": "Type: List of `file`, required, default: `$id.$key.output_forward_*.output_forward_*`, multiple_sep: `\";\"`. ",
"help_text": "Type: List of `file`, required, default: `$id.$key.output_forward_*.output_forward_*`, multiple_sep: `\";\"`. "
,
"default": "$id.$key.output_forward_*.output_forward_*"
"default":"$id.$key.output_forward_*.output_forward_*"
}
@@ -71,7 +71,7 @@
"description": "Type: List of `file`, default: `$id.$key.output_reverse_*.output_reverse_*`, multiple_sep: `\";\"`. ",
"help_text": "Type: List of `file`, default: `$id.$key.output_reverse_*.output_reverse_*`, multiple_sep: `\";\"`. "
,
"default": "$id.$key.output_reverse_*.output_reverse_*"
"default":"$id.$key.output_reverse_*.output_reverse_*"
}