CI
029f2aee81
Build pipeline: viash-hub.demultiplex.main-ks4jt
Source commit: 219bd5816e
Source message: Allow 'Undetermined' samples to be empty. (#50)
50 lines
1.2 KiB
YAML
50 lines
1.2 KiB
YAML
name: gather_fastqs_and_validate
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namespace: dataflow
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description: |
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From a directory containing fastq files, gather the files per sample
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and validate according to the contents of the sample sheet.
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argument_groups:
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- name: Input arguments
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arguments:
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- name: --input
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description: Directory containing .fastq files
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type: file
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required: true
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- name: --sample_sheet
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description: Sample sheet
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type: file
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required: true
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- name: Output arguments
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arguments:
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- name: --fastq_forward
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type: file
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direction: output
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required: true
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multiple: true
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- name: "--fastq_reverse"
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type: file
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direction: output
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required: false
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multiple: true
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resources:
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- type: nextflow_script
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path: main.nf
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entrypoint: run_wf
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test_resources:
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- type: nextflow_script
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path: test.nf
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entrypoint: test_gather_and_validate
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- type: nextflow_script
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path: test.nf
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entrypoint: test_undetermined_empty
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- type: nextflow_script
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path: test.nf
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entrypoint: test_without_index
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- path: test_data
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runners:
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- type: nextflow
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engines:
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- type: native
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