029f2aee81
Build pipeline: viash-hub.demultiplex.main-ks4jt
Source commit: 219bd5816e
Source message: Allow 'Undetermined' samples to be empty. (#50)
107 lines
3.3 KiB
JSON
107 lines
3.3 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "combine_samples",
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"description": "Combine fastq files from across samples into one event with a list of fastq files per orientation.",
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"type": "object",
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"$defs": {
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"input arguments": {
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"title": "Input arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"id": {
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"type": "string",
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"description": "ID of the new event",
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"help_text": "Type: `string`, multiple: `False`, required. "
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},
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"forward_input": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"reverse_input": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, direction: `input`. "
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},
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"falco_dir": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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}
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}
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},
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"output arguments": {
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"title": "Output arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"output_forward": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, default: `\"$id.$key.output_forward_*\"`, direction: `output`. ",
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"default": "$id.$key.output_forward_*"
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},
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"output_reverse": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, default: `\"$id.$key.output_reverse_*\"`, direction: `output`. ",
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"default": "$id.$key.output_reverse_*"
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},
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"output_falco": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, default: `\"$id.$key.output_falco_*\"`, direction: `output`. ",
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"default": "$id.$key.output_falco_*"
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/input arguments"
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},
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{
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"$ref": "#/$defs/output arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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