CI
78f3a8b65e
Build pipeline: viash-hub.demultiplex.v0.3-ldxlr
Source commit: 18e092d169
Source message: Bump version to 0.3.5
30 lines
912 B
Plaintext
30 lines
912 B
Plaintext
workflow run_wf {
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take:
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input_ch
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main:
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output_ch = input_ch
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| map { id, state ->
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def newEvent = [state.id, state + ["_meta": ["join_id": id]]]
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newEvent
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}
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| groupTuple(by: 0, sort: "hash")
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| map {run_id, states ->
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// Gather the following state for all samples
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def forward_fastqs = states.collect{it.forward_input}.flatten()
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def reverse_fastqs = states.collect{it.reverse_input}.findAll{it != null}.flatten()
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def falco_dirs = states.collect{it.falco_dir}
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def resultState = [
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"output_forward": forward_fastqs,
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"output_reverse": reverse_fastqs,
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"output_falco": falco_dirs,
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// The join ID is the same across all samples from the same run
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"_meta": ["join_id": states[0]._meta.join_id]
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]
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return [run_id, resultState]
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}
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emit:
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output_ch
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} |