CI
9868bb9100
Build pipeline: viash-hub.demultiplex.return-output-from-runner-rmgjr
Source commit: d853b212d5
Source message: Fix state
49 lines
1.1 KiB
YAML
49 lines
1.1 KiB
YAML
name: combine_samples
|
|
namespace: dataflow
|
|
description: Combine fastq files from across samples into one event with a list of fastq files per orientation.
|
|
argument_groups:
|
|
- name: Input arguments
|
|
arguments:
|
|
- name: "--id"
|
|
description: "ID of the new event"
|
|
type: string
|
|
required: true
|
|
- name: --forward_input
|
|
type: file
|
|
required: true
|
|
multiple: true
|
|
- name: --reverse_input
|
|
type: file
|
|
required: false
|
|
multiple: true
|
|
- name: "--sample_qc_dir"
|
|
type: file
|
|
required: true
|
|
- name: Output arguments
|
|
arguments:
|
|
- name: --output_forward
|
|
type: file
|
|
direction: output
|
|
multiple: true
|
|
required: true
|
|
- name: --output_reverse
|
|
type: file
|
|
direction: output
|
|
multiple: true
|
|
required: false
|
|
- name: "--output_sample_qc"
|
|
type: file
|
|
direction: output
|
|
required: true
|
|
multiple: true
|
|
resources:
|
|
- type: nextflow_script
|
|
path: main.nf
|
|
entrypoint: run_wf
|
|
|
|
runners:
|
|
- type: nextflow
|
|
|
|
engines:
|
|
- type: native
|