CI
d62df4a4ae
Build pipeline: viash-hub.demultiplex.package-config-dist-dbp75
Source commit: 04d0102777
Source message: Merge branch 'runner-returns-output' into package-config-dist
49 lines
1.1 KiB
YAML
49 lines
1.1 KiB
YAML
name: combine_samples
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namespace: dataflow
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description: Combine fastq files from across samples into one event with a list of fastq files per orientation.
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argument_groups:
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- name: Input arguments
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arguments:
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- name: "--id"
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description: "ID of the new event"
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type: string
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required: true
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- name: --forward_input
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type: file
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required: true
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multiple: true
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- name: --reverse_input
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type: file
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required: false
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multiple: true
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- name: "--sample_qc_dir"
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type: file
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required: true
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- name: Output arguments
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arguments:
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- name: --output_forward
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type: file
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direction: output
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multiple: true
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required: true
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- name: --output_reverse
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type: file
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direction: output
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multiple: true
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required: false
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- name: "--output_sample_qc"
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type: file
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direction: output
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required: true
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multiple: true
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resources:
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- type: nextflow_script
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path: main.nf
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entrypoint: run_wf
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runners:
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- type: nextflow
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engines:
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- type: native
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