Build branch htrnaseq/v0.12 with version v0.12.2 to htrnaseq on branch v0.12 (f0f85f5)
Build pipeline: viash-hub.htrnaseq.v0.12-j94lf
Source commit: f0f85f5774
Source message: Bump version to v0.12.2
This commit is contained in:
@@ -1,6 +1,6 @@
|
||||
name: "create_fdata"
|
||||
namespace: "eset"
|
||||
version: "v0.12.1"
|
||||
version: "v0.12.2"
|
||||
authors:
|
||||
- name: "Dries Schaumont"
|
||||
roles:
|
||||
@@ -154,7 +154,7 @@ engines:
|
||||
id: "docker"
|
||||
image: "python:3.12-slim"
|
||||
target_registry: "images.viash-hub.com"
|
||||
target_tag: "v0.12.1"
|
||||
target_tag: "v0.12.2"
|
||||
namespace_separator: "/"
|
||||
setup:
|
||||
- type: "apt"
|
||||
@@ -183,11 +183,11 @@ build_info:
|
||||
output: "target/executable/eset/create_fdata"
|
||||
executable: "target/executable/eset/create_fdata/create_fdata"
|
||||
viash_version: "0.9.4"
|
||||
git_commit: "32476d30426827c70014658cf0746ffcf55be62c"
|
||||
git_commit: "f0f85f57744b71e17ee3c0afe1a221cd20903aef"
|
||||
git_remote: "https://github.com/viash-hub/htrnaseq"
|
||||
package_config:
|
||||
name: "htrnaseq"
|
||||
version: "v0.12.1"
|
||||
version: "v0.12.2"
|
||||
summary: "A workflow for high-throughput RNA-seq data analyses.\n"
|
||||
description: "This workflow is designed to process high-throughput RNA-seq data,\
|
||||
\ where every\nwell of a microarray plate is a sample. A fasta file provided as\
|
||||
@@ -219,7 +219,7 @@ package_config:
|
||||
\ '_viash.yaml'}\n"
|
||||
- ".engines += { type: \"native\" }"
|
||||
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
|
||||
- ".engines[.type == 'docker'].target_tag := 'v0.12.1'"
|
||||
- ".engines[.type == 'docker'].target_tag := 'v0.12.2'"
|
||||
keywords:
|
||||
- "bioinformatics"
|
||||
- "sequencing"
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
name: htrnaseq
|
||||
version: v0.12.1
|
||||
version: v0.12.2
|
||||
summary: |
|
||||
A workflow for high-throughput RNA-seq data analyses.
|
||||
description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
#!/usr/bin/env bash
|
||||
|
||||
# create_fdata v0.12.1
|
||||
# create_fdata v0.12.2
|
||||
#
|
||||
# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
|
||||
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
|
||||
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \
|
||||
|
||||
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
|
||||
LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
|
||||
LABEL org.opencontainers.image.created="2025-09-19T07:50:13Z"
|
||||
LABEL org.opencontainers.image.created="2025-09-23T12:11:20Z"
|
||||
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
|
||||
LABEL org.opencontainers.image.revision="32476d30426827c70014658cf0746ffcf55be62c"
|
||||
LABEL org.opencontainers.image.version="v0.12.1"
|
||||
LABEL org.opencontainers.image.revision="f0f85f57744b71e17ee3c0afe1a221cd20903aef"
|
||||
LABEL org.opencontainers.image.version="v0.12.2"
|
||||
|
||||
VIASHDOCKER
|
||||
fi
|
||||
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
|
||||
|
||||
# ViashHelp: Display helpful explanation about this executable
|
||||
function ViashHelp {
|
||||
echo "create_fdata v0.12.1"
|
||||
echo "create_fdata v0.12.2"
|
||||
echo ""
|
||||
echo "Create a fdata file"
|
||||
echo ""
|
||||
@@ -643,7 +643,7 @@ while [[ $# -gt 0 ]]; do
|
||||
shift 1
|
||||
;;
|
||||
--version)
|
||||
echo "create_fdata v0.12.1"
|
||||
echo "create_fdata v0.12.2"
|
||||
exit
|
||||
;;
|
||||
--gtf)
|
||||
@@ -756,7 +756,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
|
||||
|
||||
# determine docker image id
|
||||
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
|
||||
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_fdata:v0.12.1'
|
||||
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_fdata:v0.12.2'
|
||||
fi
|
||||
|
||||
# print dockerfile
|
||||
|
||||
Reference in New Issue
Block a user