Build branch htrnaseq/v0.14 with version v0.14.2 to htrnaseq on branch v0.14 (40230f8)

Build pipeline: viash-hub.htrnaseq.v0.14.2-ws9m8

Source commit: 40230f83ee

Source message: Bump version to v0.14.2
This commit is contained in:
CI
2025-11-27 09:39:23 +00:00
parent c909aaf9a8
commit 3817ff8d16
124 changed files with 693 additions and 524 deletions

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@@ -1,6 +1,6 @@
name: "create_pdata"
namespace: "eset"
version: "v0.14.1"
version: "v0.14.2"
authors:
- name: "Dries Schaumont"
roles:
@@ -168,7 +168,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "v0.14.1"
target_tag: "v0.14.2"
namespace_separator: "/"
setup:
- type: "apt"
@@ -197,11 +197,11 @@ build_info:
output: "target/executable/eset/create_pdata"
executable: "target/executable/eset/create_pdata/create_pdata"
viash_version: "0.9.4"
git_commit: "2b3dbd8515c074b32732d3848b0d2db6fcc8cc13"
git_commit: "40230f83eef0c6488e3bc664b535e10f77ddfacb"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "v0.14.1"
version: "v0.14.2"
summary: "A workflow for high-throughput RNA-seq data analyses.\n"
description: "This workflow is designed to process high-throughput RNA-seq data,\
\ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -221,7 +221,7 @@ package_config:
\ first.\n"
info:
test_resources:
- path: "gs://viash-hub-resources/htrnaseq/v2"
- path: "gs://viash-hub-resources/htrnaseq/v4"
dest: "resources_test"
viash_version: "0.9.4"
source: "src"
@@ -233,7 +233,7 @@ package_config:
\ '_viash.yaml'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.14.1'"
- ".engines[.type == 'docker'].target_tag := 'v0.14.2'"
keywords:
- "bioinformatics"
- "sequencing"

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@@ -1,5 +1,5 @@
name: htrnaseq
version: v0.14.1
version: v0.14.2
summary: |
A workflow for high-throughput RNA-seq data analyses.
description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
@@ -11,7 +11,7 @@ links:
viash_version: 0.9.4
info:
test_resources:
- path: gs://viash-hub-resources/htrnaseq/v2
- path: gs://viash-hub-resources/htrnaseq/v4
dest: resources_test
config_mods: |
.requirements.commands := ['ps']

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@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# create_pdata v0.14.1
# create_pdata v0.14.2
#
# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
LABEL org.opencontainers.image.created="2025-11-20T19:48:24Z"
LABEL org.opencontainers.image.created="2025-11-27T08:38:31Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="2b3dbd8515c074b32732d3848b0d2db6fcc8cc13"
LABEL org.opencontainers.image.version="v0.14.1"
LABEL org.opencontainers.image.revision="40230f83eef0c6488e3bc664b535e10f77ddfacb"
LABEL org.opencontainers.image.version="v0.14.2"
VIASHDOCKER
fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "create_pdata v0.14.1"
echo "create_pdata v0.14.2"
echo ""
echo "Create a pdata file by combining the mapping statistics"
echo ""
@@ -653,7 +653,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "create_pdata v0.14.1"
echo "create_pdata v0.14.2"
exit
;;
--star_stats_file)
@@ -777,7 +777,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.14.1'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.14.2'
fi
# print dockerfile