Build branch main with version main (82647a4)

Build pipeline: viash-hub.htrnaseq.main-8kbhw

Source commit: 82647a421d

Source message: Assert that the Well ID matches the required format (#22)

target/executable/eset/create_pdata/.config.vsh.yaml

@@ -1,6 +1,32 @@
 name: "create_pdata"
 namespace: "eset"
 version: "main"
+authors:
+- name: "Dries Schaumont"
+  roles:
+  - "maintainer"
+  info:
+    links:
+      email: "dries@data-intuitive.com"
+      github: "DriesSchaumont"
+      orcid: "0000-0002-4389-0440"
+      linkedin: "dries-schaumont"
+    organizations:
+    - name: "Data Intuitive"
+      href: "https://www.data-intuitive.com"
+      role: "Data Scientist"
+- name: "Marijke Van Moerbeke"
+  roles:
+  - "contributor"
+  info:
+    links:
+      github: "mvanmoerbeke"
+      orcid: "0000-0002-3097-5621"
+      linkedin: "marijke-van-moerbeke-84303a34"
+    organizations:
+    - name: "OpenAnalytics"
+      href: "https://www.openanalytics.eu"
+      role: "Statistical Consultant"
 argument_groups:
 - name: "Arguments"
   arguments:
@@ -165,8 +191,8 @@ build_info:
   output: "target/executable/eset/create_pdata"
   executable: "target/executable/eset/create_pdata/create_pdata"
   viash_version: "0.9.0"
-  git_commit: "65dd41d8b1b4a307735c72320c96c0880c75f17f"
-  git_remote: "https://x-access-token:ghs_McZDF0yobnnHmOEb2Q4JaaB3pzr9mz1VbIOs@github.com/viash-hub/htrnaseq"
+  git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a"
+  git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq"
 package_config:
   name: "htrnaseq"
   version: "main"

target/executable/eset/create_pdata/create_pdata

@@ -10,6 +10,10 @@
 # authors of this component should specify the license in the header of such
 # files, or include a separate license file detailing the licenses of all included
 # files.
+# 
+# Component authors:
+#  * Dries Schaumont (maintainer)
+#  * Marijke Van Moerbeke (contributor)
 
 set -e
 
@@ -482,10 +486,11 @@ RUN apt-get update && \
 RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "pandas"
 
+LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
-LABEL org.opencontainers.image.created="2024-11-05T15:39:43Z"
+LABEL org.opencontainers.image.created="2024-12-17T13:58:22Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="65dd41d8b1b4a307735c72320c96c0880c75f17f"
+LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER
@@ -1104,7 +1109,7 @@ def main(par):
   logger.info("Reads per gene and chromosome table contains information for the following barcodes: %s",
               ", ".join(reads_and_genes_per_chr_stats.index))
   logger.info("Filtering mapping statistics file columns.")
-  cols_to_keep = ("NumberOfMTReads", "pctMT", "NumberOfERCCReads",
+  cols_to_keep = ("WellID", "NumberOfMTReads", "pctMT", "NumberOfERCCReads",
                   "pctERCC", "NumberOfChromReads", "pctChrom")
   try:
     reads_and_genes_per_chr_stats = reads_and_genes_per_chr_stats.loc[:,cols_to_keep]

target/executable/eset/create_pdata/nextflow_labels.config

@@ -70,11 +70,14 @@ profiles {
   local {
     // This config is for local processing.
     process {
+        withName: ".*parallel_map_process" {
+          maxForks = 1
+        }
         maxMemory = 25.GB
         withLabel: verylowcpu { cpus = 2 }
         withLabel: lowcpu { cpus = 4 }
         withLabel: midcpu { cpus = 6 }
-        withLabel: highcpu { cpus = 12 }
+        withLabel: highcpu { cpus = 8 }
   
         withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } }
         withLabel: midmem { memory = { get_memory( 12.GB * task.attempt ) } }