Build branch main with version main (10d3b38)

Build pipeline: viash-hub.htrnaseq.main-77sg6

Source commit: 10d3b382d6

Source message: Add runner integration tests, revert ec0dd8b (#64)

target/nextflow/workflows/runner/nextflow_schema.json

@@ -85,19 +85,6 @@
         }
       }
     },
-    "annotation flags": {
-      "title": "Annotation flags",
-      "type": "object",
-      "description": "No description",
-      "properties": {
-        "plain_output": {
-          "type": "boolean",
-          "description": "Flag to indicate that the output should be stored directly under $publish_dir rather than\nunder a subdirectory structure runID/<date_time>_demultiplex_<version>/.\n",
-          "help_text": "Type: `boolean_true`, multiple: `False`, default: `false`. ",
-          "default": false
-        }
-      }
-    },
     "publish arguments": {
       "title": "Publish arguments",
       "type": "object",
@@ -135,9 +122,6 @@
     {
       "$ref": "#/$defs/metadata arguments"
     },
-    {
-      "$ref": "#/$defs/annotation flags"
-    },
     {
       "$ref": "#/$defs/publish arguments"
     },