diff --git a/CHANGELOG.md b/CHANGELOG.md index 14bce61b..63ded269 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,7 @@ # New functionality -* Make sure that the Well ID matches the required format (PR #22). +* Make sure that the Well ID matches the required format (PR #22 and PR #21). # demultiplex v0.1.0 diff --git a/src/report/plateLayouts.R b/src/report/plateLayouts.R index c8b16cff..c0cd989d 100644 --- a/src/report/plateLayouts.R +++ b/src/report/plateLayouts.R @@ -40,6 +40,12 @@ plateLayout.annotation <- function( if (!(all(c("WellID", "SampleName") %in% colnames(plateData)))) { stop(" 'WellID' and 'SampleName' column required in plateData object") } + + #Check WellID Format + checkWellID <- grepl("^[[:upper:]]{1,2}[[:digit:]]{1,2}$", plateData$WellID) + if(!all(checkWellID)){ + stop("WellID does not have the correct format") + } plateData[, WellID := paste0( @@ -49,7 +55,7 @@ plateLayout.annotation <- function( ) )] - plateData <- platetools::fill_plate(plateData, "WellID", plate = 384) + plateData <- platetools::fill_plate(plateData, "WellID", plate = layout[1]*layout[2]) plateData$column <- factor( sprintf( diff --git a/target/executable/eset/create_eset/.config.vsh.yaml b/target/executable/eset/create_eset/.config.vsh.yaml index 68f8c186..f6353595 100644 --- a/target/executable/eset/create_eset/.config.vsh.yaml +++ b/target/executable/eset/create_eset/.config.vsh.yaml @@ -220,8 +220,8 @@ build_info: output: "target/executable/eset/create_eset" executable: "target/executable/eset/create_eset/create_eset" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/eset/create_eset/create_eset b/target/executable/eset/create_eset/create_eset index 92cb796a..1c544e99 100755 --- a/target/executable/eset/create_eset/create_eset +++ b/target/executable/eset/create_eset/create_eset @@ -488,9 +488,9 @@ remotes::install_url("https://cran.r-project.org/src/contrib/Archive/Seurat/Seur LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_eset" -LABEL org.opencontainers.image.created="2024-12-17T13:58:22Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:20Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/eset/create_fdata/.config.vsh.yaml b/target/executable/eset/create_fdata/.config.vsh.yaml index a464b79a..0ea4ee9f 100644 --- a/target/executable/eset/create_fdata/.config.vsh.yaml +++ b/target/executable/eset/create_fdata/.config.vsh.yaml @@ -177,8 +177,8 @@ build_info: output: "target/executable/eset/create_fdata" executable: "target/executable/eset/create_fdata/create_fdata" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/eset/create_fdata/create_fdata b/target/executable/eset/create_fdata/create_fdata index 2ad25aac..3aac3794 100755 --- a/target/executable/eset/create_fdata/create_fdata +++ b/target/executable/eset/create_fdata/create_fdata @@ -478,9 +478,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata" -LABEL org.opencontainers.image.created="2024-12-17T13:58:24Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:21Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/eset/create_pdata/.config.vsh.yaml b/target/executable/eset/create_pdata/.config.vsh.yaml index b8394101..dae2f205 100644 --- a/target/executable/eset/create_pdata/.config.vsh.yaml +++ b/target/executable/eset/create_pdata/.config.vsh.yaml @@ -191,8 +191,8 @@ build_info: output: "target/executable/eset/create_pdata" executable: "target/executable/eset/create_pdata/create_pdata" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/eset/create_pdata/create_pdata b/target/executable/eset/create_pdata/create_pdata index a2192ba8..37e210c5 100755 --- a/target/executable/eset/create_pdata/create_pdata +++ b/target/executable/eset/create_pdata/create_pdata @@ -488,9 +488,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata" -LABEL org.opencontainers.image.created="2024-12-17T13:58:22Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:20Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml b/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml index 68fc24ad..62459bc9 100644 --- a/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml +++ b/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml @@ -148,8 +148,8 @@ build_info: output: "target/executable/integration_test_components/htrnaseq/check_eset" executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset index 0e483aca..024f37e8 100755 --- a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset +++ b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset @@ -470,9 +470,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset" -LABEL org.opencontainers.image.created="2024-12-17T13:58:24Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:21Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/parallel_map/.config.vsh.yaml b/target/executable/parallel_map/.config.vsh.yaml index 137c150d..301199ab 100644 --- a/target/executable/parallel_map/.config.vsh.yaml +++ b/target/executable/parallel_map/.config.vsh.yaml @@ -264,8 +264,8 @@ build_info: output: "target/executable/parallel_map" executable: "target/executable/parallel_map/parallel_map" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/parallel_map/parallel_map b/target/executable/parallel_map/parallel_map index 468d6e29..8e03248c 100755 --- a/target/executable/parallel_map/parallel_map +++ b/target/executable/parallel_map/parallel_map @@ -517,9 +517,9 @@ ENV STAR_BINARY=STAR COPY STAR /usr/local/bin/$STAR_BINARY LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component parallel_map" -LABEL org.opencontainers.image.created="2024-12-17T13:58:23Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:20Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/report/create_report/.config.vsh.yaml b/target/executable/report/create_report/.config.vsh.yaml index 089090ac..1fcb291c 100644 --- a/target/executable/report/create_report/.config.vsh.yaml +++ b/target/executable/report/create_report/.config.vsh.yaml @@ -201,8 +201,8 @@ build_info: output: "target/executable/report/create_report" executable: "target/executable/report/create_report/create_report" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/report/create_report/create_report b/target/executable/report/create_report/create_report index e0835aad..85d9926a 100755 --- a/target/executable/report/create_report/create_report +++ b/target/executable/report/create_report/create_report @@ -476,9 +476,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component report create_report" -LABEL org.opencontainers.image.created="2024-12-17T13:58:23Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:21Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/report/create_report/plateLayouts.R b/target/executable/report/create_report/plateLayouts.R index c8b16cff..c0cd989d 100755 --- a/target/executable/report/create_report/plateLayouts.R +++ b/target/executable/report/create_report/plateLayouts.R @@ -40,6 +40,12 @@ plateLayout.annotation <- function( if (!(all(c("WellID", "SampleName") %in% colnames(plateData)))) { stop(" 'WellID' and 'SampleName' column required in plateData object") } + + #Check WellID Format + checkWellID <- grepl("^[[:upper:]]{1,2}[[:digit:]]{1,2}$", plateData$WellID) + if(!all(checkWellID)){ + stop("WellID does not have the correct format") + } plateData[, WellID := paste0( @@ -49,7 +55,7 @@ plateLayout.annotation <- function( ) )] - plateData <- platetools::fill_plate(plateData, "WellID", plate = 384) + plateData <- platetools::fill_plate(plateData, "WellID", plate = layout[1]*layout[2]) plateData$column <- factor( sprintf( diff --git a/target/executable/stats/combine_star_logs/.config.vsh.yaml b/target/executable/stats/combine_star_logs/.config.vsh.yaml index 061a43f6..2e915948 100644 --- a/target/executable/stats/combine_star_logs/.config.vsh.yaml +++ b/target/executable/stats/combine_star_logs/.config.vsh.yaml @@ -198,8 +198,8 @@ build_info: output: "target/executable/stats/combine_star_logs" executable: "target/executable/stats/combine_star_logs/combine_star_logs" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/stats/combine_star_logs/combine_star_logs b/target/executable/stats/combine_star_logs/combine_star_logs index 84326014..3542ebb6 100755 --- a/target/executable/stats/combine_star_logs/combine_star_logs +++ b/target/executable/stats/combine_star_logs/combine_star_logs @@ -490,9 +490,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs" -LABEL org.opencontainers.image.created="2024-12-17T13:58:22Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:20Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/stats/generate_pool_statistics/.config.vsh.yaml b/target/executable/stats/generate_pool_statistics/.config.vsh.yaml index 1fb63c0c..6544881f 100644 --- a/target/executable/stats/generate_pool_statistics/.config.vsh.yaml +++ b/target/executable/stats/generate_pool_statistics/.config.vsh.yaml @@ -182,8 +182,8 @@ build_info: output: "target/executable/stats/generate_pool_statistics" executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/stats/generate_pool_statistics/generate_pool_statistics b/target/executable/stats/generate_pool_statistics/generate_pool_statistics index 7e70eae6..1cb2d553 100755 --- a/target/executable/stats/generate_pool_statistics/generate_pool_statistics +++ b/target/executable/stats/generate_pool_statistics/generate_pool_statistics @@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics" -LABEL org.opencontainers.image.created="2024-12-17T13:58:22Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:19Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/executable/stats/generate_well_statistics/.config.vsh.yaml b/target/executable/stats/generate_well_statistics/.config.vsh.yaml index 394cca74..8606bd90 100644 --- a/target/executable/stats/generate_well_statistics/.config.vsh.yaml +++ b/target/executable/stats/generate_well_statistics/.config.vsh.yaml @@ -262,8 +262,8 @@ build_info: output: "target/executable/stats/generate_well_statistics" executable: "target/executable/stats/generate_well_statistics/generate_well_statistics" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/executable/stats/generate_well_statistics/generate_well_statistics b/target/executable/stats/generate_well_statistics/generate_well_statistics index add70704..b3f876a0 100755 --- a/target/executable/stats/generate_well_statistics/generate_well_statistics +++ b/target/executable/stats/generate_well_statistics/generate_well_statistics @@ -520,9 +520,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics" -LABEL org.opencontainers.image.created="2024-12-17T13:58:23Z" +LABEL org.opencontainers.image.created="2024-12-17T15:56:20Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="82647a421dae521a9563f7f02050f13a1319eb4a" +LABEL org.opencontainers.image.revision="da935587f3496228b8486d1cce6f368a28eb8443" LABEL org.opencontainers.image.version="main" VIASHDOCKER diff --git a/target/nextflow/eset/create_eset/.config.vsh.yaml b/target/nextflow/eset/create_eset/.config.vsh.yaml index fcc19fad..d7cfe653 100644 --- a/target/nextflow/eset/create_eset/.config.vsh.yaml +++ b/target/nextflow/eset/create_eset/.config.vsh.yaml @@ -220,8 +220,8 @@ build_info: output: "target/nextflow/eset/create_eset" executable: "target/nextflow/eset/create_eset/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/eset/create_eset/main.nf b/target/nextflow/eset/create_eset/main.nf index 921c8dd8..9bf5b631 100644 --- a/target/nextflow/eset/create_eset/main.nf +++ b/target/nextflow/eset/create_eset/main.nf @@ -3090,8 +3090,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/eset/create_eset", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/eset/create_fdata/.config.vsh.yaml b/target/nextflow/eset/create_fdata/.config.vsh.yaml index 29aceed1..35c044f4 100644 --- a/target/nextflow/eset/create_fdata/.config.vsh.yaml +++ b/target/nextflow/eset/create_fdata/.config.vsh.yaml @@ -177,8 +177,8 @@ build_info: output: "target/nextflow/eset/create_fdata" executable: "target/nextflow/eset/create_fdata/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/eset/create_fdata/main.nf b/target/nextflow/eset/create_fdata/main.nf index 5b08c223..b259c5c9 100644 --- a/target/nextflow/eset/create_fdata/main.nf +++ b/target/nextflow/eset/create_fdata/main.nf @@ -3044,8 +3044,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/eset/create_fdata", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/eset/create_pdata/.config.vsh.yaml b/target/nextflow/eset/create_pdata/.config.vsh.yaml index 3e7dc011..a729ced5 100644 --- a/target/nextflow/eset/create_pdata/.config.vsh.yaml +++ b/target/nextflow/eset/create_pdata/.config.vsh.yaml @@ -191,8 +191,8 @@ build_info: output: "target/nextflow/eset/create_pdata" executable: "target/nextflow/eset/create_pdata/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/eset/create_pdata/main.nf b/target/nextflow/eset/create_pdata/main.nf index 12c25cb5..fd8f9128 100644 --- a/target/nextflow/eset/create_pdata/main.nf +++ b/target/nextflow/eset/create_pdata/main.nf @@ -3058,8 +3058,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/eset/create_pdata", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml b/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml index 7e160cdc..1194442c 100644 --- a/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml +++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml @@ -148,8 +148,8 @@ build_info: output: "target/nextflow/integration_test_components/htrnaseq/check_eset" executable: "target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf b/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf index d20465e6..46b0fbca 100644 --- a/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf +++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf @@ -2997,8 +2997,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/integration_test_components/htrnaseq/check_eset", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/parallel_map/.config.vsh.yaml b/target/nextflow/parallel_map/.config.vsh.yaml index 0b62070c..f6dfc486 100644 --- a/target/nextflow/parallel_map/.config.vsh.yaml +++ b/target/nextflow/parallel_map/.config.vsh.yaml @@ -264,8 +264,8 @@ build_info: output: "target/nextflow/parallel_map" executable: "target/nextflow/parallel_map/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/parallel_map/main.nf b/target/nextflow/parallel_map/main.nf index d2a91168..63f8b6c8 100644 --- a/target/nextflow/parallel_map/main.nf +++ b/target/nextflow/parallel_map/main.nf @@ -3148,8 +3148,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/parallel_map", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/report/create_report/.config.vsh.yaml b/target/nextflow/report/create_report/.config.vsh.yaml index fff208e5..cb62abc5 100644 --- a/target/nextflow/report/create_report/.config.vsh.yaml +++ b/target/nextflow/report/create_report/.config.vsh.yaml @@ -201,8 +201,8 @@ build_info: output: "target/nextflow/report/create_report" executable: "target/nextflow/report/create_report/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/report/create_report/main.nf b/target/nextflow/report/create_report/main.nf index b282fcf7..92553f35 100644 --- a/target/nextflow/report/create_report/main.nf +++ b/target/nextflow/report/create_report/main.nf @@ -3077,8 +3077,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/report/create_report", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/report/create_report/plateLayouts.R b/target/nextflow/report/create_report/plateLayouts.R index c8b16cff..c0cd989d 100755 --- a/target/nextflow/report/create_report/plateLayouts.R +++ b/target/nextflow/report/create_report/plateLayouts.R @@ -40,6 +40,12 @@ plateLayout.annotation <- function( if (!(all(c("WellID", "SampleName") %in% colnames(plateData)))) { stop(" 'WellID' and 'SampleName' column required in plateData object") } + + #Check WellID Format + checkWellID <- grepl("^[[:upper:]]{1,2}[[:digit:]]{1,2}$", plateData$WellID) + if(!all(checkWellID)){ + stop("WellID does not have the correct format") + } plateData[, WellID := paste0( @@ -49,7 +55,7 @@ plateLayout.annotation <- function( ) )] - plateData <- platetools::fill_plate(plateData, "WellID", plate = 384) + plateData <- platetools::fill_plate(plateData, "WellID", plate = layout[1]*layout[2]) plateData$column <- factor( sprintf( diff --git a/target/nextflow/stats/combine_star_logs/.config.vsh.yaml b/target/nextflow/stats/combine_star_logs/.config.vsh.yaml index d7932abb..797deb41 100644 --- a/target/nextflow/stats/combine_star_logs/.config.vsh.yaml +++ b/target/nextflow/stats/combine_star_logs/.config.vsh.yaml @@ -198,8 +198,8 @@ build_info: output: "target/nextflow/stats/combine_star_logs" executable: "target/nextflow/stats/combine_star_logs/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/stats/combine_star_logs/main.nf b/target/nextflow/stats/combine_star_logs/main.nf index c5f93656..fb84497f 100644 --- a/target/nextflow/stats/combine_star_logs/main.nf +++ b/target/nextflow/stats/combine_star_logs/main.nf @@ -3060,8 +3060,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/stats/combine_star_logs", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml b/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml index 300d7442..6c3aa306 100644 --- a/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml +++ b/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml @@ -182,8 +182,8 @@ build_info: output: "target/nextflow/stats/generate_pool_statistics" executable: "target/nextflow/stats/generate_pool_statistics/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/stats/generate_pool_statistics/main.nf b/target/nextflow/stats/generate_pool_statistics/main.nf index f12a283d..7018d65d 100644 --- a/target/nextflow/stats/generate_pool_statistics/main.nf +++ b/target/nextflow/stats/generate_pool_statistics/main.nf @@ -3044,8 +3044,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/stats/generate_pool_statistics", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml b/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml index 8e86141b..da719ada 100644 --- a/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml +++ b/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml @@ -262,8 +262,8 @@ build_info: output: "target/nextflow/stats/generate_well_statistics" executable: "target/nextflow/stats/generate_well_statistics/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/stats/generate_well_statistics/main.nf b/target/nextflow/stats/generate_well_statistics/main.nf index 790f9e80..d9b7c7ab 100644 --- a/target/nextflow/stats/generate_well_statistics/main.nf +++ b/target/nextflow/stats/generate_well_statistics/main.nf @@ -3135,8 +3135,8 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/stats/generate_well_statistics", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/workflows/htrnaseq/.config.vsh.yaml b/target/nextflow/workflows/htrnaseq/.config.vsh.yaml index 637e6295..e5aed4c2 100644 --- a/target/nextflow/workflows/htrnaseq/.config.vsh.yaml +++ b/target/nextflow/workflows/htrnaseq/.config.vsh.yaml @@ -308,8 +308,8 @@ build_info: output: "target/nextflow/workflows/htrnaseq" executable: "target/nextflow/workflows/htrnaseq/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" dependencies: - "target/nextflow/stats/combine_star_logs" - "target/nextflow/stats/generate_pool_statistics" diff --git a/target/nextflow/workflows/htrnaseq/main.nf b/target/nextflow/workflows/htrnaseq/main.nf index f2df086d..c329d618 100644 --- a/target/nextflow/workflows/htrnaseq/main.nf +++ b/target/nextflow/workflows/htrnaseq/main.nf @@ -3210,8 +3210,8 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/htrnaseq", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/workflows/parallel_map_wf/.config.vsh.yaml b/target/nextflow/workflows/parallel_map_wf/.config.vsh.yaml index ba25da27..58b572fc 100644 --- a/target/nextflow/workflows/parallel_map_wf/.config.vsh.yaml +++ b/target/nextflow/workflows/parallel_map_wf/.config.vsh.yaml @@ -175,8 +175,8 @@ build_info: output: "target/nextflow/workflows/parallel_map_wf" executable: "target/nextflow/workflows/parallel_map_wf/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" dependencies: - "target/nextflow/parallel_map" - "target/nextflow/workflows/utils/groupWells" diff --git a/target/nextflow/workflows/parallel_map_wf/main.nf b/target/nextflow/workflows/parallel_map_wf/main.nf index d946c1c1..298eae30 100644 --- a/target/nextflow/workflows/parallel_map_wf/main.nf +++ b/target/nextflow/workflows/parallel_map_wf/main.nf @@ -3028,8 +3028,8 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/parallel_map_wf", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/workflows/utils/groupWells/.config.vsh.yaml b/target/nextflow/workflows/utils/groupWells/.config.vsh.yaml index d7d26b2a..365dfbab 100644 --- a/target/nextflow/workflows/utils/groupWells/.config.vsh.yaml +++ b/target/nextflow/workflows/utils/groupWells/.config.vsh.yaml @@ -185,8 +185,8 @@ build_info: output: "target/nextflow/workflows/utils/groupWells" executable: "target/nextflow/workflows/utils/groupWells/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" version: "main" diff --git a/target/nextflow/workflows/utils/groupWells/main.nf b/target/nextflow/workflows/utils/groupWells/main.nf index f92e9f4e..1dca20b7 100644 --- a/target/nextflow/workflows/utils/groupWells/main.nf +++ b/target/nextflow/workflows/utils/groupWells/main.nf @@ -3039,8 +3039,8 @@ meta = [ "engine" : "native", "output" : "target/nextflow/workflows/utils/groupWells", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq", diff --git a/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml b/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml index 02ae3eab..06af6272 100644 --- a/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml +++ b/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml @@ -255,8 +255,8 @@ build_info: output: "target/nextflow/workflows/well_demultiplex" executable: "target/nextflow/workflows/well_demultiplex/main.nf" viash_version: "0.9.0" - git_commit: "82647a421dae521a9563f7f02050f13a1319eb4a" - git_remote: "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + git_commit: "da935587f3496228b8486d1cce6f368a28eb8443" + git_remote: "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" dependencies: - "target/dependencies/vsh/vsh/biobox/main/nextflow/cutadapt" - "target/dependencies/vsh/vsh/craftbox/v0.1.0/nextflow/concat_text" diff --git a/target/nextflow/workflows/well_demultiplex/main.nf b/target/nextflow/workflows/well_demultiplex/main.nf index 88f56303..38582057 100644 --- a/target/nextflow/workflows/well_demultiplex/main.nf +++ b/target/nextflow/workflows/well_demultiplex/main.nf @@ -3134,8 +3134,8 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/well_demultiplex", "viash_version" : "0.9.0", - "git_commit" : "82647a421dae521a9563f7f02050f13a1319eb4a", - "git_remote" : "https://x-access-token:ghs_GvoC19gNBNw8DS3yDc8aa44laHZP4K2GBiY3@github.com/viash-hub/htrnaseq" + "git_commit" : "da935587f3496228b8486d1cce6f368a28eb8443", + "git_remote" : "https://x-access-token:ghs_oGmMqoqpugW8Vx1b40vPl2y04BQppa1bMrOI@github.com/viash-hub/htrnaseq" }, "package_config" : { "name" : "htrnaseq",