From 8a9db1b4159b1899bbd0c5cd80a48efaafe9843f Mon Sep 17 00:00:00 2001 From: CI Date: Tue, 2 Sep 2025 14:03:52 +0000 Subject: [PATCH] Build branch htrnaseq/main with version main to htrnaseq on branch main (92755e8) Build pipeline: viash-hub.htrnaseq.main-srl6j Source commit: https://github.com/viash-hub/htrnaseq/commit/92755e84e7e2b17cc44664388d6fbb444a26cffd Source message: Runner: output state and rework publishing (#68) * add eset output param * add outputs to publishing and runner * update publishing * Update publishing * Remove debug statements * Undo change to integration test script * Add asserts * Fix asserts and canonicalization of publish paths * Move fData to folder * Add CHANGELOG entry [ci skip] --------- Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com> --- target/executable/eset/create_eset/create_eset | 2 +- target/executable/eset/create_fdata/create_fdata | 2 +- target/executable/eset/create_pdata/create_pdata | 2 +- .../integration_test_components/htrnaseq/check_eset/check_eset | 2 +- .../check_cutadapt_output/check_cutadapt_output | 2 +- target/executable/io/publish_fastqs/publish_fastqs | 2 +- target/executable/io/publish_results/publish_results | 2 +- target/executable/parallel_map/parallel_map | 2 +- target/executable/report/create_report/create_report | 2 +- target/executable/stats/combine_star_logs/combine_star_logs | 2 +- .../stats/generate_pool_statistics/generate_pool_statistics | 2 +- .../stats/generate_well_statistics/generate_well_statistics | 2 +- target/executable/utils/save_params/save_params | 2 +- 13 files changed, 13 insertions(+), 13 deletions(-) diff --git a/target/executable/eset/create_eset/create_eset b/target/executable/eset/create_eset/create_eset index 9f6d1c56..b1163e97 100755 --- a/target/executable/eset/create_eset/create_eset +++ b/target/executable/eset/create_eset/create_eset @@ -456,7 +456,7 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_eset" -LABEL org.opencontainers.image.created="2025-09-02T07:26:24Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/eset/create_fdata/create_fdata b/target/executable/eset/create_fdata/create_fdata index f6ea8979..4298803e 100755 --- a/target/executable/eset/create_fdata/create_fdata +++ b/target/executable/eset/create_fdata/create_fdata @@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/eset/create_pdata/create_pdata b/target/executable/eset/create_pdata/create_pdata index 4aaa9ba3..bc22bfb4 100755 --- a/target/executable/eset/create_pdata/create_pdata +++ b/target/executable/eset/create_pdata/create_pdata @@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata" -LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset index 3066647d..5b418246 100755 --- a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset +++ b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset @@ -455,7 +455,7 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset" -LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output index c68eb6db..033d4ae3 100755 --- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output +++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output @@ -457,7 +457,7 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output" -LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/io/publish_fastqs/publish_fastqs b/target/executable/io/publish_fastqs/publish_fastqs index 2fb88558..954f530e 100755 --- a/target/executable/io/publish_fastqs/publish_fastqs +++ b/target/executable/io/publish_fastqs/publish_fastqs @@ -450,7 +450,7 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs" -LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/io/publish_results/publish_results b/target/executable/io/publish_results/publish_results index 12ee67d9..5b50265d 100755 --- a/target/executable/io/publish_results/publish_results +++ b/target/executable/io/publish_results/publish_results @@ -450,7 +450,7 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component io publish_results" -LABEL org.opencontainers.image.created="2025-09-02T07:26:23Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:27Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/parallel_map/parallel_map b/target/executable/parallel_map/parallel_map index 75f5032e..d309b894 100755 --- a/target/executable/parallel_map/parallel_map +++ b/target/executable/parallel_map/parallel_map @@ -461,7 +461,7 @@ ENV STAR_BINARY=STAR COPY STAR /usr/local/bin/$STAR_BINARY LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component parallel_map" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/report/create_report/create_report b/target/executable/report/create_report/create_report index 8f8d0054..e4abc8f9 100755 --- a/target/executable/report/create_report/create_report +++ b/target/executable/report/create_report/create_report @@ -465,7 +465,7 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component report create_report" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/stats/combine_star_logs/combine_star_logs b/target/executable/stats/combine_star_logs/combine_star_logs index f0886f97..a80eb7bf 100755 --- a/target/executable/stats/combine_star_logs/combine_star_logs +++ b/target/executable/stats/combine_star_logs/combine_star_logs @@ -457,7 +457,7 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/stats/generate_pool_statistics/generate_pool_statistics b/target/executable/stats/generate_pool_statistics/generate_pool_statistics index 09224180..d4521de2 100755 --- a/target/executable/stats/generate_pool_statistics/generate_pool_statistics +++ b/target/executable/stats/generate_pool_statistics/generate_pool_statistics @@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/stats/generate_well_statistics/generate_well_statistics b/target/executable/stats/generate_well_statistics/generate_well_statistics index 87c7ad20..475c923d 100755 --- a/target/executable/stats/generate_well_statistics/generate_well_statistics +++ b/target/executable/stats/generate_well_statistics/generate_well_statistics @@ -458,7 +458,7 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main" diff --git a/target/executable/utils/save_params/save_params b/target/executable/utils/save_params/save_params index 14fdb83a..c23e4ee9 100755 --- a/target/executable/utils/save_params/save_params +++ b/target/executable/utils/save_params/save_params @@ -453,7 +453,7 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "pyyaml" LABEL org.opencontainers.image.description="Companion container for running component utils save_params" -LABEL org.opencontainers.image.created="2025-09-02T07:26:22Z" +LABEL org.opencontainers.image.created="2025-09-02T13:10:26Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" LABEL org.opencontainers.image.revision="92755e84e7e2b17cc44664388d6fbb444a26cffd" LABEL org.opencontainers.image.version="main"