diff --git a/src/config/labels.config b/src/config/labels.config index 2821ec46..a02af659 100644 --- a/src/config/labels.config +++ b/src/config/labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/src/utils/save_params/script.py b/src/utils/save_params/script.py index 01b358f6..58255bd5 100644 --- a/src/utils/save_params/script.py +++ b/src/utils/save_params/script.py @@ -16,11 +16,11 @@ par = { 'p_data=pData.$id.tsv', 'html_report=report.$id.html', 'input_r1[0]=/home/jakubmajercik/Data_Intuitive/htrnaseq/v1/100k/SRR14730301/VH02001612_S9_R1_001.fastq', - 'input_r2[0]=/home/jakubmajercik/Data_Intuitive/htrnaseq/v1/100k/SRR14730301/VH02001612_S9_R2_001.fastq', + 'input_r1[1]=/home/jakubmajercik/Data_Intuitive/htrnaseq/v1/100k/SRR14730301/VH02001612_S9_R2_001.fastq', 'barcodesFasta=/home/jakubmajercik/Data_Intuitive/htrnaseq/v1/360-wells-with-ids.fasta', 'genomeDir=/home/jakubmajercik/Data_Intuitive/htrnaseq/v1/genomeDir/gencode.v41.star.sparse', 'annotation=/home/jakubmajercik/Data_Intuitive/htrnaseq/v1/genomeDir/gencode.v41.annotation.gtf.gz'], - "output": 'params.yaml' + "output": 'params_out.yaml' } ## VIASH END diff --git a/target/executable/eset/create_eset/.config.vsh.yaml b/target/executable/eset/create_eset/.config.vsh.yaml index 35872050..d37b2bb6 100644 --- a/target/executable/eset/create_eset/.config.vsh.yaml +++ b/target/executable/eset/create_eset/.config.vsh.yaml @@ -198,7 +198,7 @@ build_info: output: "target/executable/eset/create_eset" executable: "target/executable/eset/create_eset/create_eset" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/eset/create_eset/create_eset b/target/executable/eset/create_eset/create_eset index ed08915d..b9060266 100755 --- a/target/executable/eset/create_eset/create_eset +++ b/target/executable/eset/create_eset/create_eset @@ -477,9 +477,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_eset" -LABEL org.opencontainers.image.created="2025-03-18T10:26:24Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:57Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/eset/create_eset/nextflow_labels.config b/target/executable/eset/create_eset/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/eset/create_eset/nextflow_labels.config +++ b/target/executable/eset/create_eset/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/eset/create_fdata/.config.vsh.yaml b/target/executable/eset/create_fdata/.config.vsh.yaml index ed3466c3..a748e7b5 100644 --- a/target/executable/eset/create_fdata/.config.vsh.yaml +++ b/target/executable/eset/create_fdata/.config.vsh.yaml @@ -177,7 +177,7 @@ build_info: output: "target/executable/eset/create_fdata" executable: "target/executable/eset/create_fdata/create_fdata" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/eset/create_fdata/create_fdata b/target/executable/eset/create_fdata/create_fdata index ff5baea7..4987e5ff 100755 --- a/target/executable/eset/create_fdata/create_fdata +++ b/target/executable/eset/create_fdata/create_fdata @@ -478,9 +478,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata" -LABEL org.opencontainers.image.created="2025-03-18T10:26:24Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:57Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/eset/create_fdata/nextflow_labels.config b/target/executable/eset/create_fdata/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/eset/create_fdata/nextflow_labels.config +++ b/target/executable/eset/create_fdata/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/eset/create_pdata/.config.vsh.yaml b/target/executable/eset/create_pdata/.config.vsh.yaml index 21692a75..d7ceb379 100644 --- a/target/executable/eset/create_pdata/.config.vsh.yaml +++ b/target/executable/eset/create_pdata/.config.vsh.yaml @@ -191,7 +191,7 @@ build_info: output: "target/executable/eset/create_pdata" executable: "target/executable/eset/create_pdata/create_pdata" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/eset/create_pdata/create_pdata b/target/executable/eset/create_pdata/create_pdata index d3664282..3d9fe8da 100755 --- a/target/executable/eset/create_pdata/create_pdata +++ b/target/executable/eset/create_pdata/create_pdata @@ -488,9 +488,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata" -LABEL org.opencontainers.image.created="2025-03-18T10:26:24Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:57Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/eset/create_pdata/nextflow_labels.config b/target/executable/eset/create_pdata/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/eset/create_pdata/nextflow_labels.config +++ b/target/executable/eset/create_pdata/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml b/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml index 811d387c..b4f55379 100644 --- a/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml +++ b/target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml @@ -148,7 +148,7 @@ build_info: output: "target/executable/integration_test_components/htrnaseq/check_eset" executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset index e5214536..7b9e9707 100755 --- a/target/executable/integration_test_components/htrnaseq/check_eset/check_eset +++ b/target/executable/integration_test_components/htrnaseq/check_eset/check_eset @@ -470,9 +470,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset" -LABEL org.opencontainers.image.created="2025-03-18T10:26:26Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:56Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/integration_test_components/htrnaseq/check_eset/nextflow_labels.config b/target/executable/integration_test_components/htrnaseq/check_eset/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/integration_test_components/htrnaseq/check_eset/nextflow_labels.config +++ b/target/executable/integration_test_components/htrnaseq/check_eset/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml index 23f979dc..e159b76c 100644 --- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml +++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml @@ -158,7 +158,7 @@ build_info: output: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output" executable: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output index b6f98ed1..0bdd62ac 100755 --- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output +++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output @@ -476,9 +476,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output" -LABEL org.opencontainers.image.created="2025-03-18T10:26:23Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:58Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config +++ b/target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/io/publish_fastqs/.config.vsh.yaml b/target/executable/io/publish_fastqs/.config.vsh.yaml index ea621f44..5e8ddd4d 100644 --- a/target/executable/io/publish_fastqs/.config.vsh.yaml +++ b/target/executable/io/publish_fastqs/.config.vsh.yaml @@ -143,7 +143,7 @@ build_info: output: "target/executable/io/publish_fastqs" executable: "target/executable/io/publish_fastqs/publish_fastqs" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/io/publish_fastqs/nextflow_labels.config b/target/executable/io/publish_fastqs/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/io/publish_fastqs/nextflow_labels.config +++ b/target/executable/io/publish_fastqs/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/io/publish_fastqs/publish_fastqs b/target/executable/io/publish_fastqs/publish_fastqs index d6f93a68..34a2163f 100755 --- a/target/executable/io/publish_fastqs/publish_fastqs +++ b/target/executable/io/publish_fastqs/publish_fastqs @@ -470,9 +470,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs" -LABEL org.opencontainers.image.created="2025-03-18T10:26:24Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:56Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/io/publish_results/.config.vsh.yaml b/target/executable/io/publish_results/.config.vsh.yaml index 6576ee97..dc36d80a 100644 --- a/target/executable/io/publish_results/.config.vsh.yaml +++ b/target/executable/io/publish_results/.config.vsh.yaml @@ -187,7 +187,7 @@ build_info: output: "target/executable/io/publish_results" executable: "target/executable/io/publish_results/publish_results" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/io/publish_results/nextflow_labels.config b/target/executable/io/publish_results/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/io/publish_results/nextflow_labels.config +++ b/target/executable/io/publish_results/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/io/publish_results/publish_results b/target/executable/io/publish_results/publish_results index c00a24f4..0ef4c550 100755 --- a/target/executable/io/publish_results/publish_results +++ b/target/executable/io/publish_results/publish_results @@ -484,9 +484,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component io publish_results" -LABEL org.opencontainers.image.created="2025-03-18T10:26:24Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:57Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/parallel_map/.config.vsh.yaml b/target/executable/parallel_map/.config.vsh.yaml index 0c08c41f..c243701a 100644 --- a/target/executable/parallel_map/.config.vsh.yaml +++ b/target/executable/parallel_map/.config.vsh.yaml @@ -279,7 +279,7 @@ build_info: output: "target/executable/parallel_map" executable: "target/executable/parallel_map/parallel_map" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/parallel_map/nextflow_labels.config b/target/executable/parallel_map/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/parallel_map/nextflow_labels.config +++ b/target/executable/parallel_map/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/parallel_map/parallel_map b/target/executable/parallel_map/parallel_map index 166ce6e9..d2ee50c2 100755 --- a/target/executable/parallel_map/parallel_map +++ b/target/executable/parallel_map/parallel_map @@ -540,9 +540,9 @@ ENV STAR_BINARY=STAR COPY STAR /usr/local/bin/$STAR_BINARY LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component parallel_map" -LABEL org.opencontainers.image.created="2025-03-18T10:26:23Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:58Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/report/create_report/.config.vsh.yaml b/target/executable/report/create_report/.config.vsh.yaml index 10bb92d9..6ad61929 100644 --- a/target/executable/report/create_report/.config.vsh.yaml +++ b/target/executable/report/create_report/.config.vsh.yaml @@ -201,7 +201,7 @@ build_info: output: "target/executable/report/create_report" executable: "target/executable/report/create_report/create_report" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/report/create_report/create_report b/target/executable/report/create_report/create_report index 404dcc2a..ad7573f4 100755 --- a/target/executable/report/create_report/create_report +++ b/target/executable/report/create_report/create_report @@ -476,9 +476,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component report create_report" -LABEL org.opencontainers.image.created="2025-03-18T10:26:26Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:58Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/report/create_report/nextflow_labels.config b/target/executable/report/create_report/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/report/create_report/nextflow_labels.config +++ b/target/executable/report/create_report/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/stats/combine_star_logs/.config.vsh.yaml b/target/executable/stats/combine_star_logs/.config.vsh.yaml index 4bab10c3..32d245ed 100644 --- a/target/executable/stats/combine_star_logs/.config.vsh.yaml +++ b/target/executable/stats/combine_star_logs/.config.vsh.yaml @@ -198,7 +198,7 @@ build_info: output: "target/executable/stats/combine_star_logs" executable: "target/executable/stats/combine_star_logs/combine_star_logs" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/stats/combine_star_logs/combine_star_logs b/target/executable/stats/combine_star_logs/combine_star_logs index 596b24c7..c5a43020 100755 --- a/target/executable/stats/combine_star_logs/combine_star_logs +++ b/target/executable/stats/combine_star_logs/combine_star_logs @@ -490,9 +490,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs" -LABEL org.opencontainers.image.created="2025-03-18T10:26:25Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:56Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/stats/combine_star_logs/nextflow_labels.config b/target/executable/stats/combine_star_logs/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/stats/combine_star_logs/nextflow_labels.config +++ b/target/executable/stats/combine_star_logs/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/stats/generate_pool_statistics/.config.vsh.yaml b/target/executable/stats/generate_pool_statistics/.config.vsh.yaml index 1ccb6353..7c4d4249 100644 --- a/target/executable/stats/generate_pool_statistics/.config.vsh.yaml +++ b/target/executable/stats/generate_pool_statistics/.config.vsh.yaml @@ -182,7 +182,7 @@ build_info: output: "target/executable/stats/generate_pool_statistics" executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/stats/generate_pool_statistics/generate_pool_statistics b/target/executable/stats/generate_pool_statistics/generate_pool_statistics index 2ca0c0c1..01f3537a 100755 --- a/target/executable/stats/generate_pool_statistics/generate_pool_statistics +++ b/target/executable/stats/generate_pool_statistics/generate_pool_statistics @@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics" -LABEL org.opencontainers.image.created="2025-03-18T10:26:25Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:56Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/stats/generate_pool_statistics/nextflow_labels.config b/target/executable/stats/generate_pool_statistics/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/stats/generate_pool_statistics/nextflow_labels.config +++ b/target/executable/stats/generate_pool_statistics/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/stats/generate_well_statistics/.config.vsh.yaml b/target/executable/stats/generate_well_statistics/.config.vsh.yaml index fa0bb8b2..e8a8e43a 100644 --- a/target/executable/stats/generate_well_statistics/.config.vsh.yaml +++ b/target/executable/stats/generate_well_statistics/.config.vsh.yaml @@ -264,7 +264,7 @@ build_info: output: "target/executable/stats/generate_well_statistics" executable: "target/executable/stats/generate_well_statistics/generate_well_statistics" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/stats/generate_well_statistics/generate_well_statistics b/target/executable/stats/generate_well_statistics/generate_well_statistics index fc8a7b1e..8ac7acee 100755 --- a/target/executable/stats/generate_well_statistics/generate_well_statistics +++ b/target/executable/stats/generate_well_statistics/generate_well_statistics @@ -520,9 +520,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke" LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics" -LABEL org.opencontainers.image.created="2025-03-18T10:26:25Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:56Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/executable/stats/generate_well_statistics/nextflow_labels.config b/target/executable/stats/generate_well_statistics/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/stats/generate_well_statistics/nextflow_labels.config +++ b/target/executable/stats/generate_well_statistics/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/utils/save_params/.config.vsh.yaml b/target/executable/utils/save_params/.config.vsh.yaml index 3a3a5e92..dc65fffe 100644 --- a/target/executable/utils/save_params/.config.vsh.yaml +++ b/target/executable/utils/save_params/.config.vsh.yaml @@ -141,7 +141,7 @@ build_info: output: "target/executable/utils/save_params" executable: "target/executable/utils/save_params/save_params" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/executable/utils/save_params/nextflow_labels.config b/target/executable/utils/save_params/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/executable/utils/save_params/nextflow_labels.config +++ b/target/executable/utils/save_params/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/executable/utils/save_params/save_params b/target/executable/utils/save_params/save_params index 1114e9bc..dfe90262 100755 --- a/target/executable/utils/save_params/save_params +++ b/target/executable/utils/save_params/save_params @@ -473,9 +473,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "pyyaml" LABEL org.opencontainers.image.description="Companion container for running component utils save_params" -LABEL org.opencontainers.image.created="2025-03-18T10:26:24Z" +LABEL org.opencontainers.image.created="2025-03-25T15:33:58Z" LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq" -LABEL org.opencontainers.image.revision="e267a40fa5315def82482ec703ef77aa28b4e222" +LABEL org.opencontainers.image.revision="1561d769c65192a820053a565654dee8cbe55588" LABEL org.opencontainers.image.version="save-params" VIASHDOCKER diff --git a/target/nextflow/eset/create_eset/.config.vsh.yaml b/target/nextflow/eset/create_eset/.config.vsh.yaml index 2ea1f25f..36c93926 100644 --- a/target/nextflow/eset/create_eset/.config.vsh.yaml +++ b/target/nextflow/eset/create_eset/.config.vsh.yaml @@ -198,7 +198,7 @@ build_info: output: "target/nextflow/eset/create_eset" executable: "target/nextflow/eset/create_eset/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/eset/create_eset/main.nf b/target/nextflow/eset/create_eset/main.nf index 8ef7a1cb..b86d68d0 100644 --- a/target/nextflow/eset/create_eset/main.nf +++ b/target/nextflow/eset/create_eset/main.nf @@ -3072,7 +3072,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/eset/create_eset", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/eset/create_eset/nextflow_labels.config b/target/nextflow/eset/create_eset/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/eset/create_eset/nextflow_labels.config +++ b/target/nextflow/eset/create_eset/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/eset/create_fdata/.config.vsh.yaml b/target/nextflow/eset/create_fdata/.config.vsh.yaml index 13a41693..3b6ccd0b 100644 --- a/target/nextflow/eset/create_fdata/.config.vsh.yaml +++ b/target/nextflow/eset/create_fdata/.config.vsh.yaml @@ -177,7 +177,7 @@ build_info: output: "target/nextflow/eset/create_fdata" executable: "target/nextflow/eset/create_fdata/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/eset/create_fdata/main.nf b/target/nextflow/eset/create_fdata/main.nf index c67307e5..95ae9626 100644 --- a/target/nextflow/eset/create_fdata/main.nf +++ b/target/nextflow/eset/create_fdata/main.nf @@ -3044,7 +3044,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/eset/create_fdata", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/eset/create_fdata/nextflow_labels.config b/target/nextflow/eset/create_fdata/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/eset/create_fdata/nextflow_labels.config +++ b/target/nextflow/eset/create_fdata/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/eset/create_pdata/.config.vsh.yaml b/target/nextflow/eset/create_pdata/.config.vsh.yaml index 1f8b6156..957e2364 100644 --- a/target/nextflow/eset/create_pdata/.config.vsh.yaml +++ b/target/nextflow/eset/create_pdata/.config.vsh.yaml @@ -191,7 +191,7 @@ build_info: output: "target/nextflow/eset/create_pdata" executable: "target/nextflow/eset/create_pdata/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/eset/create_pdata/main.nf b/target/nextflow/eset/create_pdata/main.nf index 30c3b6ce..27d6572a 100644 --- a/target/nextflow/eset/create_pdata/main.nf +++ b/target/nextflow/eset/create_pdata/main.nf @@ -3058,7 +3058,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/eset/create_pdata", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/eset/create_pdata/nextflow_labels.config b/target/nextflow/eset/create_pdata/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/eset/create_pdata/nextflow_labels.config +++ b/target/nextflow/eset/create_pdata/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml b/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml index ef99a544..b2a9b3ad 100644 --- a/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml +++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml @@ -148,7 +148,7 @@ build_info: output: "target/nextflow/integration_test_components/htrnaseq/check_eset" executable: "target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf b/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf index 622381e6..0d6e2c03 100644 --- a/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf +++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/main.nf @@ -2997,7 +2997,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/integration_test_components/htrnaseq/check_eset", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow_labels.config b/target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow_labels.config +++ b/target/nextflow/integration_test_components/htrnaseq/check_eset/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml index 9ac12a12..155fe30c 100644 --- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml +++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml @@ -158,7 +158,7 @@ build_info: output: "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output" executable: "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf index 17704fef..27a7ff31 100644 --- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf +++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/main.nf @@ -3009,7 +3009,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config +++ b/target/nextflow/integration_test_components/well_demultiplexing/check_cutadapt_output/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/io/publish_fastqs/.config.vsh.yaml b/target/nextflow/io/publish_fastqs/.config.vsh.yaml index fd9df34e..4c7218af 100644 --- a/target/nextflow/io/publish_fastqs/.config.vsh.yaml +++ b/target/nextflow/io/publish_fastqs/.config.vsh.yaml @@ -143,7 +143,7 @@ build_info: output: "target/nextflow/io/publish_fastqs" executable: "target/nextflow/io/publish_fastqs/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/io/publish_fastqs/main.nf b/target/nextflow/io/publish_fastqs/main.nf index aa737626..fb9b93bf 100644 --- a/target/nextflow/io/publish_fastqs/main.nf +++ b/target/nextflow/io/publish_fastqs/main.nf @@ -2983,7 +2983,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/io/publish_fastqs", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/io/publish_fastqs/nextflow_labels.config b/target/nextflow/io/publish_fastqs/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/io/publish_fastqs/nextflow_labels.config +++ b/target/nextflow/io/publish_fastqs/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/io/publish_results/.config.vsh.yaml b/target/nextflow/io/publish_results/.config.vsh.yaml index 02d3cdc7..da9df32b 100644 --- a/target/nextflow/io/publish_results/.config.vsh.yaml +++ b/target/nextflow/io/publish_results/.config.vsh.yaml @@ -187,7 +187,7 @@ build_info: output: "target/nextflow/io/publish_results" executable: "target/nextflow/io/publish_results/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/io/publish_results/main.nf b/target/nextflow/io/publish_results/main.nf index ad7fced7..3059f8f1 100644 --- a/target/nextflow/io/publish_results/main.nf +++ b/target/nextflow/io/publish_results/main.nf @@ -3032,7 +3032,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/io/publish_results", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/io/publish_results/nextflow_labels.config b/target/nextflow/io/publish_results/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/io/publish_results/nextflow_labels.config +++ b/target/nextflow/io/publish_results/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/parallel_map/.config.vsh.yaml b/target/nextflow/parallel_map/.config.vsh.yaml index efde8e2e..8b4f5212 100644 --- a/target/nextflow/parallel_map/.config.vsh.yaml +++ b/target/nextflow/parallel_map/.config.vsh.yaml @@ -279,7 +279,7 @@ build_info: output: "target/nextflow/parallel_map" executable: "target/nextflow/parallel_map/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/parallel_map/main.nf b/target/nextflow/parallel_map/main.nf index 70a0bc3d..436d5138 100644 --- a/target/nextflow/parallel_map/main.nf +++ b/target/nextflow/parallel_map/main.nf @@ -3144,7 +3144,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/parallel_map", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/parallel_map/nextflow_labels.config b/target/nextflow/parallel_map/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/parallel_map/nextflow_labels.config +++ b/target/nextflow/parallel_map/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/report/create_report/.config.vsh.yaml b/target/nextflow/report/create_report/.config.vsh.yaml index 64300431..3d94110e 100644 --- a/target/nextflow/report/create_report/.config.vsh.yaml +++ b/target/nextflow/report/create_report/.config.vsh.yaml @@ -201,7 +201,7 @@ build_info: output: "target/nextflow/report/create_report" executable: "target/nextflow/report/create_report/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/report/create_report/main.nf b/target/nextflow/report/create_report/main.nf index 4e753333..cea6364e 100644 --- a/target/nextflow/report/create_report/main.nf +++ b/target/nextflow/report/create_report/main.nf @@ -3077,7 +3077,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/report/create_report", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/report/create_report/nextflow_labels.config b/target/nextflow/report/create_report/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/report/create_report/nextflow_labels.config +++ b/target/nextflow/report/create_report/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/stats/combine_star_logs/.config.vsh.yaml b/target/nextflow/stats/combine_star_logs/.config.vsh.yaml index 93cb4972..c962a30b 100644 --- a/target/nextflow/stats/combine_star_logs/.config.vsh.yaml +++ b/target/nextflow/stats/combine_star_logs/.config.vsh.yaml @@ -198,7 +198,7 @@ build_info: output: "target/nextflow/stats/combine_star_logs" executable: "target/nextflow/stats/combine_star_logs/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/stats/combine_star_logs/main.nf b/target/nextflow/stats/combine_star_logs/main.nf index fc845455..a31087df 100644 --- a/target/nextflow/stats/combine_star_logs/main.nf +++ b/target/nextflow/stats/combine_star_logs/main.nf @@ -3060,7 +3060,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/stats/combine_star_logs", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/stats/combine_star_logs/nextflow_labels.config b/target/nextflow/stats/combine_star_logs/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/stats/combine_star_logs/nextflow_labels.config +++ b/target/nextflow/stats/combine_star_logs/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml b/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml index ebe11885..0dca691c 100644 --- a/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml +++ b/target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml @@ -182,7 +182,7 @@ build_info: output: "target/nextflow/stats/generate_pool_statistics" executable: "target/nextflow/stats/generate_pool_statistics/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/stats/generate_pool_statistics/main.nf b/target/nextflow/stats/generate_pool_statistics/main.nf index 549a63d4..ac2f19ac 100644 --- a/target/nextflow/stats/generate_pool_statistics/main.nf +++ b/target/nextflow/stats/generate_pool_statistics/main.nf @@ -3044,7 +3044,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/stats/generate_pool_statistics", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/stats/generate_pool_statistics/nextflow_labels.config b/target/nextflow/stats/generate_pool_statistics/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/stats/generate_pool_statistics/nextflow_labels.config +++ b/target/nextflow/stats/generate_pool_statistics/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml b/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml index ffc7e35b..1ca7d86f 100644 --- a/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml +++ b/target/nextflow/stats/generate_well_statistics/.config.vsh.yaml @@ -264,7 +264,7 @@ build_info: output: "target/nextflow/stats/generate_well_statistics" executable: "target/nextflow/stats/generate_well_statistics/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/stats/generate_well_statistics/main.nf b/target/nextflow/stats/generate_well_statistics/main.nf index f9fc831a..c80597bb 100644 --- a/target/nextflow/stats/generate_well_statistics/main.nf +++ b/target/nextflow/stats/generate_well_statistics/main.nf @@ -3139,7 +3139,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/stats/generate_well_statistics", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/stats/generate_well_statistics/nextflow_labels.config b/target/nextflow/stats/generate_well_statistics/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/stats/generate_well_statistics/nextflow_labels.config +++ b/target/nextflow/stats/generate_well_statistics/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/utils/listInputDir/.config.vsh.yaml b/target/nextflow/utils/listInputDir/.config.vsh.yaml index 05e6f793..0ba224c6 100644 --- a/target/nextflow/utils/listInputDir/.config.vsh.yaml +++ b/target/nextflow/utils/listInputDir/.config.vsh.yaml @@ -165,7 +165,7 @@ build_info: output: "target/nextflow/utils/listInputDir" executable: "target/nextflow/utils/listInputDir/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/utils/listInputDir/main.nf b/target/nextflow/utils/listInputDir/main.nf index 7d7bc767..79346d38 100644 --- a/target/nextflow/utils/listInputDir/main.nf +++ b/target/nextflow/utils/listInputDir/main.nf @@ -3004,7 +3004,7 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/utils/listInputDir", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/utils/listInputDir/nextflow_labels.config b/target/nextflow/utils/listInputDir/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/utils/listInputDir/nextflow_labels.config +++ b/target/nextflow/utils/listInputDir/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/utils/save_params/.config.vsh.yaml b/target/nextflow/utils/save_params/.config.vsh.yaml index 493b6fa2..d1304b33 100644 --- a/target/nextflow/utils/save_params/.config.vsh.yaml +++ b/target/nextflow/utils/save_params/.config.vsh.yaml @@ -141,7 +141,7 @@ build_info: output: "target/nextflow/utils/save_params" executable: "target/nextflow/utils/save_params/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/utils/save_params/main.nf b/target/nextflow/utils/save_params/main.nf index 451e4312..ade79d23 100644 --- a/target/nextflow/utils/save_params/main.nf +++ b/target/nextflow/utils/save_params/main.nf @@ -2983,7 +2983,7 @@ meta = [ "engine" : "docker|native", "output" : "target/nextflow/utils/save_params", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/utils/save_params/nextflow_labels.config b/target/nextflow/utils/save_params/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/utils/save_params/nextflow_labels.config +++ b/target/nextflow/utils/save_params/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/workflows/htrnaseq/.config.vsh.yaml b/target/nextflow/workflows/htrnaseq/.config.vsh.yaml index baf8920e..6f78f1f8 100644 --- a/target/nextflow/workflows/htrnaseq/.config.vsh.yaml +++ b/target/nextflow/workflows/htrnaseq/.config.vsh.yaml @@ -326,7 +326,7 @@ build_info: output: "target/nextflow/workflows/htrnaseq" executable: "target/nextflow/workflows/htrnaseq/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" dependencies: - "target/nextflow/stats/combine_star_logs" diff --git a/target/nextflow/workflows/htrnaseq/main.nf b/target/nextflow/workflows/htrnaseq/main.nf index 94ecd550..628dbac0 100644 --- a/target/nextflow/workflows/htrnaseq/main.nf +++ b/target/nextflow/workflows/htrnaseq/main.nf @@ -3235,7 +3235,7 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/htrnaseq", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/workflows/htrnaseq/nextflow_labels.config b/target/nextflow/workflows/htrnaseq/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/workflows/htrnaseq/nextflow_labels.config +++ b/target/nextflow/workflows/htrnaseq/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/workflows/runner/.config.vsh.yaml b/target/nextflow/workflows/runner/.config.vsh.yaml index 6c919393..d1c4df0e 100644 --- a/target/nextflow/workflows/runner/.config.vsh.yaml +++ b/target/nextflow/workflows/runner/.config.vsh.yaml @@ -218,7 +218,7 @@ build_info: output: "target/nextflow/workflows/runner" executable: "target/nextflow/workflows/runner/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" dependencies: - "target/nextflow/utils/listInputDir" diff --git a/target/nextflow/workflows/runner/main.nf b/target/nextflow/workflows/runner/main.nf index b194d90d..bbe18f65 100644 --- a/target/nextflow/workflows/runner/main.nf +++ b/target/nextflow/workflows/runner/main.nf @@ -3082,7 +3082,7 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/runner", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/workflows/runner/nextflow_labels.config b/target/nextflow/workflows/runner/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/workflows/runner/nextflow_labels.config +++ b/target/nextflow/workflows/runner/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml b/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml index 7eeffad0..fc0cb88e 100644 --- a/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml +++ b/target/nextflow/workflows/well_demultiplex/.config.vsh.yaml @@ -211,7 +211,7 @@ build_info: output: "target/nextflow/workflows/well_demultiplex" executable: "target/nextflow/workflows/well_demultiplex/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" dependencies: - "target/dependencies/vsh/vsh/biobox/v0.3.0/nextflow/cutadapt" diff --git a/target/nextflow/workflows/well_demultiplex/main.nf b/target/nextflow/workflows/well_demultiplex/main.nf index 43d06c34..a2c35435 100644 --- a/target/nextflow/workflows/well_demultiplex/main.nf +++ b/target/nextflow/workflows/well_demultiplex/main.nf @@ -3084,7 +3084,7 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/well_demultiplex", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/workflows/well_demultiplex/nextflow_labels.config b/target/nextflow/workflows/well_demultiplex/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/workflows/well_demultiplex/nextflow_labels.config +++ b/target/nextflow/workflows/well_demultiplex/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } } diff --git a/target/nextflow/workflows/well_metadata/.config.vsh.yaml b/target/nextflow/workflows/well_metadata/.config.vsh.yaml index 7d569efe..ce51209b 100644 --- a/target/nextflow/workflows/well_metadata/.config.vsh.yaml +++ b/target/nextflow/workflows/well_metadata/.config.vsh.yaml @@ -209,7 +209,7 @@ build_info: output: "target/nextflow/workflows/well_metadata" executable: "target/nextflow/workflows/well_metadata/main.nf" viash_version: "0.9.0" - git_commit: "e267a40fa5315def82482ec703ef77aa28b4e222" + git_commit: "1561d769c65192a820053a565654dee8cbe55588" git_remote: "https://github.com/viash-hub/htrnaseq" package_config: name: "htrnaseq" diff --git a/target/nextflow/workflows/well_metadata/main.nf b/target/nextflow/workflows/well_metadata/main.nf index a56c4f52..62ff1582 100644 --- a/target/nextflow/workflows/well_metadata/main.nf +++ b/target/nextflow/workflows/well_metadata/main.nf @@ -3064,7 +3064,7 @@ meta = [ "engine" : "native|native", "output" : "target/nextflow/workflows/well_metadata", "viash_version" : "0.9.0", - "git_commit" : "e267a40fa5315def82482ec703ef77aa28b4e222", + "git_commit" : "1561d769c65192a820053a565654dee8cbe55588", "git_remote" : "https://github.com/viash-hub/htrnaseq" }, "package_config" : { diff --git a/target/nextflow/workflows/well_metadata/nextflow_labels.config b/target/nextflow/workflows/well_metadata/nextflow_labels.config index 2821ec46..a02af659 100644 --- a/target/nextflow/workflows/well_metadata/nextflow_labels.config +++ b/target/nextflow/workflows/well_metadata/nextflow_labels.config @@ -27,7 +27,7 @@ process { withLabel: verylowmem { memory = { get_memory( 4.GB * task.attempt ) } } withLabel: lowmem { memory = { get_memory( 8.GB * task.attempt ) } } withLabel: midmem { memory = { get_memory( 16.GB * task.attempt ) } } - withLabel: highmem { memory = { get_memory( 64.GB * task.attempt ) } } + withLabel: highmem { memory = { get_memory( 32.GB * task.attempt ) } } }