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Build branch main with version main (900f5ed)

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Build pipeline: viash-hub.htrnaseq.main-2ww7f

Source commit: 900f5ed356

Source message: Runner: allow multiple input directories. (#38)
This commit is contained in:
CI
2025-02-13 16:08:09 +00:00
parent 34f9a5c19d
commit 9eac6fff21
90 changed files with 1650 additions and 5016 deletions
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4
target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
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@@ -148,8 +148,8 @@ build_info:
output: "target/executable/integration_test_components/htrnaseq/check_eset"
executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
viash_version: "0.9.0"
git_commit: "8eb391e3ebd9ffe573b76b9be635a81ec495c3bb"
git_remote: "https://x-access-token:ghs_ybw8wXfG5bR3FsTslxlh1sXKguvM9R0Rd31p@github.com/viash-hub/htrnaseq"
git_commit: "900f5ed35659137aa5c62d183232e0f33de97873"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

4
target/executable/integration_test_components/htrnaseq/check_eset/check_eset
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@@ -470,9 +470,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
LABEL org.opencontainers.image.created="2025-01-17T13:20:51Z"
LABEL org.opencontainers.image.created="2025-02-13T15:18:38Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="8eb391e3ebd9ffe573b76b9be635a81ec495c3bb"
LABEL org.opencontainers.image.revision="900f5ed35659137aa5c62d183232e0f33de97873"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

4
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
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@@ -158,8 +158,8 @@ build_info:
output: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output"
executable: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output"
viash_version: "0.9.0"
git_commit: "8eb391e3ebd9ffe573b76b9be635a81ec495c3bb"
git_remote: "https://x-access-token:ghs_ybw8wXfG5bR3FsTslxlh1sXKguvM9R0Rd31p@github.com/viash-hub/htrnaseq"
git_commit: "900f5ed35659137aa5c62d183232e0f33de97873"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"

11
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
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@@ -476,9 +476,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output"
LABEL org.opencontainers.image.created="2025-01-17T13:20:51Z"
LABEL org.opencontainers.image.created="2025-02-13T15:18:38Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="8eb391e3ebd9ffe573b76b9be635a81ec495c3bb"
LABEL org.opencontainers.image.revision="900f5ed35659137aa5c62d183232e0f33de97873"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER
@@ -1119,7 +1119,9 @@ def assert_number_of_reads(reads):
"SRR14730301__A1": 165,
"SRR14730301__B1": 194,
"SRR14730302__A1": 141,
"SRR14730302__B1": 213
"SRR14730302__B1": 213,
"SRR14730302__unknown": 99646,
"SRR14730301__unknown": 99641,
}
for input_id, expected_reads in expected_number_of_reads.items():
num_reads = len(reads[input_id])
@@ -1160,7 +1162,8 @@ def create_input_mapping(sample_ids, inputs_r1, inputs_r2):
def read_input_files(input_mapping):
expected_keys = {"SRR14730301__A1", "SRR14730301__B1",
"SRR14730302__A1", "SRR14730302__B1"}
"SRR14730302__A1", "SRR14730302__B1",
"SRR14730301__unknown", "SRR14730302__unknown"}
difference = set(input_mapping.keys()) - expected_keys
assert not difference, f"Found unexpected output id(s): {difference}"
result = {}