Build branch save-params with version save-params (cc910b4)

Build pipeline: viash-hub.htrnaseq.save-params-7scdj

Source commit: cc910b4284

Source message: add save_params to runner

target/executable/utils/save_params/.config.vsh.yaml

@@ -22,14 +22,16 @@ argument_groups:
     multiple_sep: ";"
 - name: "Outputs"
   arguments:
-  - type: "string"
+  - type: "file"
     name: "--output"
     description: "The output YAML file\n"
     info: null
     example:
     - "output.yaml"
+    must_exist: true
+    create_parent: true
     required: true
-    direction: "input"
+    direction: "output"
     multiple: false
     multiple_sep: ";"
 resources:
@@ -146,7 +148,7 @@ build_info:
   output: "target/executable/utils/save_params"
   executable: "target/executable/utils/save_params/save_params"
   viash_version: "0.9.2"
-  git_commit: "afdc3f4ed8c09d39a40ba036f794b7061a689bd6"
+  git_commit: "cc910b428428dd32f183df0c2009fc36e75394e0"
   git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
   name: "htrnaseq"

target/executable/utils/save_params/save_params

@@ -453,9 +453,9 @@ RUN pip install --upgrade pip && \
   pip install --upgrade --no-cache-dir "pyyaml"
 
 LABEL org.opencontainers.image.description="Companion container for running component utils save_params"
-LABEL org.opencontainers.image.created="2025-05-06T08:16:06Z"
+LABEL org.opencontainers.image.created="2025-05-06T14:35:26Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="afdc3f4ed8c09d39a40ba036f794b7061a689bd6"
+LABEL org.opencontainers.image.revision="cc910b428428dd32f183df0c2009fc36e75394e0"
 LABEL org.opencontainers.image.version="save-params"
 
 VIASHDOCKER
@@ -588,7 +588,7 @@ function ViashHelp {
   echo ""
   echo "Outputs:"
   echo "    --output"
-  echo "        type: string, required parameter"
+  echo "        type: file, required parameter, output, file must exist"
   echo "        example: output.yaml"
   echo "        The output YAML file"
   echo ""
@@ -958,6 +958,11 @@ if [[ -n "$VIASH_META_MEMORY_PIB" ]]; then
   fi
 fi
 
+# create parent directories of output files, if so desired
+if [ ! -z "$VIASH_PAR_OUTPUT" ] && [ ! -d "$(dirname "$VIASH_PAR_OUTPUT")" ]; then
+  mkdir -p "$(dirname "$VIASH_PAR_OUTPUT")"
+fi
+
 if  [ "$VIASH_ENGINE_ID" == "native" ]  ; then
   if [ "$VIASH_MODE" == "run" ]; then
     VIASH_CMD="bash"
@@ -970,6 +975,11 @@ fi
 if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
   # detect volumes from file arguments
   VIASH_CHOWN_VARS=()
+if [ ! -z "$VIASH_PAR_OUTPUT" ]; then
+  VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_PAR_OUTPUT")" )
+  VIASH_PAR_OUTPUT=$(ViashDockerAutodetectMount "$VIASH_PAR_OUTPUT")
+  VIASH_CHOWN_VARS+=( "$VIASH_PAR_OUTPUT" )
+fi
 if [ ! -z "$VIASH_META_RESOURCES_DIR" ]; then
   VIASH_DIRECTORY_MOUNTS+=( "$(ViashDockerAutodetectMountArg "$VIASH_META_RESOURCES_DIR")" )
   VIASH_META_RESOURCES_DIR=$(ViashDockerAutodetectMount "$VIASH_META_RESOURCES_DIR")
@@ -1085,8 +1095,6 @@ def decode_params_yaml(encoded_yaml):
     
     return yaml_data
 
-print(par['params_yaml'])
-
 params = decode_params_yaml(par['params_yaml'])
 
 with open(par["output"], 'w') as f:
@@ -1101,6 +1109,9 @@ VIASHEOF
 if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
   # strip viash automount from file paths
   
+  if [ ! -z "$VIASH_PAR_OUTPUT" ]; then
+    VIASH_PAR_OUTPUT=$(ViashDockerStripAutomount "$VIASH_PAR_OUTPUT")
+  fi
   if [ ! -z "$VIASH_META_RESOURCES_DIR" ]; then
     VIASH_META_RESOURCES_DIR=$(ViashDockerStripAutomount "$VIASH_META_RESOURCES_DIR")
   fi
@@ -1116,4 +1127,11 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 fi
 
 
+# check whether required files exist
+if [ ! -z "$VIASH_PAR_OUTPUT" ] && [ ! -e "$VIASH_PAR_OUTPUT" ]; then
+  ViashError "Output file '$VIASH_PAR_OUTPUT' does not exist."
+  exit 1
+fi
+
+
 exit 0