Build branch htrnaseq/v0.14 with version v0.14.4 to htrnaseq on branch v0.14 (2a509fa)

Build pipeline: viash-hub.htrnaseq.v0.14.4-n6dwv

Source commit: 2a509fa7ae

Source message: Bump version to v0.14.4
This commit is contained in:
CI
2025-12-12 14:40:11 +00:00
parent 921e84a799
commit c824346bbd
133 changed files with 796 additions and 447 deletions

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@@ -1,6 +1,6 @@
name: "save_params"
namespace: "utils"
version: "v0.14.3"
version: "v0.14.4"
argument_groups:
- name: "Inputs"
arguments:
@@ -128,7 +128,7 @@ engines:
id: "docker"
image: "python:3.12-slim"
target_registry: "images.viash-hub.com"
target_tag: "v0.14.3"
target_tag: "v0.14.4"
namespace_separator: "/"
setup:
- type: "apt"
@@ -151,11 +151,11 @@ build_info:
output: "target/executable/utils/save_params"
executable: "target/executable/utils/save_params/save_params"
viash_version: "0.9.4"
git_commit: "e9507042c57fcbf9a03d769d758d5d36e1631d25"
git_commit: "2a509fa7ae74164a26ec1c2db7e1841410cd985e"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "v0.14.3"
version: "v0.14.4"
summary: "A workflow for high-throughput RNA-seq data analyses.\n"
description: "This workflow is designed to process high-throughput RNA-seq data,\
\ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -187,7 +187,7 @@ package_config:
\ '_viash.yaml'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.14.3'"
- ".engines[.type == 'docker'].target_tag := 'v0.14.4'"
keywords:
- "bioinformatics"
- "sequencing"

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@@ -1,5 +1,5 @@
name: htrnaseq
version: v0.14.3
version: v0.14.4
summary: |
A workflow for high-throughput RNA-seq data analyses.
description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"

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@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# save_params v0.14.3
# save_params v0.14.4
#
# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -453,10 +453,10 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "pyyaml"
LABEL org.opencontainers.image.description="Companion container for running component utils save_params"
LABEL org.opencontainers.image.created="2025-12-03T14:02:51Z"
LABEL org.opencontainers.image.created="2025-12-12T13:48:17Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="e9507042c57fcbf9a03d769d758d5d36e1631d25"
LABEL org.opencontainers.image.version="v0.14.3"
LABEL org.opencontainers.image.revision="2a509fa7ae74164a26ec1c2db7e1841410cd985e"
LABEL org.opencontainers.image.version="v0.14.4"
VIASHDOCKER
fi
@@ -573,7 +573,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "save_params v0.14.3"
echo "save_params v0.14.4"
echo ""
echo "Save parameters to a YAML file"
echo ""
@@ -639,7 +639,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "save_params v0.14.3"
echo "save_params v0.14.4"
exit
;;
--id)
@@ -763,7 +763,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/utils/save_params:v0.14.3'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/utils/save_params:v0.14.4'
fi
# print dockerfile