Build branch main with version main (a948c26)

Build pipeline: viash-hub.htrnaseq.main-qpqxt

Source commit: a948c26193

Source message: Bump viash to 0.9.4 (#51)

target/executable/report/create_report/.config.vsh.yaml

@@ -211,8 +211,8 @@ build_info:
   engine: "docker|native"
   output: "target/executable/report/create_report"
   executable: "target/executable/report/create_report/create_report"
-  viash_version: "0.9.2"
-  git_commit: "cb58990a33f6ea6e46e474f2095b10218cf08912"
+  viash_version: "0.9.4"
+  git_commit: "a948c261931dbb784fc9ce6f7d5d93f52008a99f"
   git_remote: "https://github.com/viash-hub/htrnaseq"
 package_config:
   name: "htrnaseq"
@@ -222,7 +222,7 @@ package_config:
     test_resources:
     - path: "gs://viash-hub-test-data/htrnaseq/v1/"
       dest: "resources_test"
-  viash_version: "0.9.2"
+  viash_version: "0.9.4"
   source: "src"
   target: "target"
   config_mods:

target/executable/report/create_report/create_report

@@ -2,7 +2,7 @@
 
 # create_report main
 # 
-# This wrapper script is auto-generated by viash 0.9.2 and is thus a derivative
+# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
 # Intuitive.
 # 
@@ -465,9 +465,9 @@ RUN Rscript -e 'options(warn = 2); if (!requireNamespace("remotes", quietly = TR
 
 LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
 LABEL org.opencontainers.image.description="Companion container for running component report create_report"
-LABEL org.opencontainers.image.created="2025-04-29T11:22:41Z"
+LABEL org.opencontainers.image.created="2025-04-29T12:46:57Z"
 LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
-LABEL org.opencontainers.image.revision="cb58990a33f6ea6e46e474f2095b10218cf08912"
+LABEL org.opencontainers.image.revision="a948c261931dbb784fc9ce6f7d5d93f52008a99f"
 LABEL org.opencontainers.image.version="main"
 
 VIASHDOCKER

target/executable/report/create_report/plateLayouts.R

@@ -283,15 +283,31 @@ plateLayout <- function(
 
   if (is.null(colours)) {
     colours <- tryCatch({
-      colorRamp2(
+      circlize::colorRamp2(
         breaks = breaks,
         colors = brewer.pal(length(breaks), "Purples")
       )
     },
-    error = function(cond) {
-      return(c("#9370DB", "white"))
+    error = function(cond){
+      
+      message("Recomputed breaks for proper colour mapping")
+      
+      breakValues <- plateValues$values
+      breakValues[which(is.na(breakValues))] <- 0
+      if (all(breakValues >= 0)) {
+        breaks <- computeBreaks(7, max(plateValues$values, na.rm = TRUE))
+      } else {
+        breaks <- quantile(plateValues$values,  probs = seq(0, 1, 0.125))
+      }
+      
+      circlize::colorRamp2(
+        breaks = breaks,
+        colors = brewer.pal(length(breaks), "Purples")
+      )
+      
     })
   }
+  
   ht <- Heatmap(
     plateValues$values,
     column_title = mainTitle, column_title_side = "top",
@@ -425,6 +441,7 @@ computeBreaks <- function(nBreaks, variable) {
     )
     coefExp <- c(exp(coefSystem[1]), coefSystem[2])
     breaks <- coefExp[1] * exp((1:(nBreaks - 1)) * coefExp[2])
+    breaks <- unique(c(0, breaks))
   }
-  return(c(0, breaks))
-}
+  return(breaks)
+}