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Build branch main with version main (8dff52a)

Browse Source 
Build pipeline: viash-hub.htrnaseq.main-j2rpn

Source commit: 8dff52a885

Source message: Add `umi_length` parameter to runner. (#46)
This commit is contained in:
CI
2025-02-28 14:10:10 +00:00
parent e5a3fd36ee
commit df41c7466c
62 changed files with 119 additions and 70 deletions
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2
target/executable/eset/create_eset/.config.vsh.yaml
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@@ -198,7 +198,7 @@ build_info:
output: "target/executable/eset/create_eset"
executable: "target/executable/eset/create_eset/create_eset"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/eset/create_eset/create_eset
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@@ -477,9 +477,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_eset"
LABEL org.opencontainers.image.created="2025-02-21T11:03:30Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/eset/create_fdata/.config.vsh.yaml
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@@ -177,7 +177,7 @@ build_info:
output: "target/executable/eset/create_fdata"
executable: "target/executable/eset/create_fdata/create_fdata"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/eset/create_fdata/create_fdata
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@@ -478,9 +478,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_fdata"
LABEL org.opencontainers.image.created="2025-02-21T11:03:30Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:07Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/eset/create_pdata/.config.vsh.yaml
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@@ -191,7 +191,7 @@ build_info:
output: "target/executable/eset/create_pdata"
executable: "target/executable/eset/create_pdata/create_pdata"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/eset/create_pdata/create_pdata
View File

@@ -488,9 +488,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
LABEL org.opencontainers.image.created="2025-02-21T11:03:30Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/integration_test_components/htrnaseq/check_eset/.config.vsh.yaml
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@@ -148,7 +148,7 @@ build_info:
output: "target/executable/integration_test_components/htrnaseq/check_eset"
executable: "target/executable/integration_test_components/htrnaseq/check_eset/check_eset"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/integration_test_components/htrnaseq/check_eset/check_eset
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@@ -470,9 +470,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/htrnaseq check_eset"
LABEL org.opencontainers.image.created="2025-02-21T11:03:30Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/.config.vsh.yaml
View File

@@ -158,7 +158,7 @@ build_info:
output: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output"
executable: "target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/integration_test_components/well_demultiplexing/check_cutadapt_output/check_cutadapt_output
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@@ -476,9 +476,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component integration_test_components/well_demultiplexing check_cutadapt_output"
LABEL org.opencontainers.image.created="2025-02-21T11:03:30Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/io/publish_fastqs/.config.vsh.yaml
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@@ -143,7 +143,7 @@ build_info:
output: "target/executable/io/publish_fastqs"
executable: "target/executable/io/publish_fastqs/publish_fastqs"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/io/publish_fastqs/publish_fastqs
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@@ -470,9 +470,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish_fastqs"
LABEL org.opencontainers.image.created="2025-02-21T11:03:28Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/io/publish_results/.config.vsh.yaml
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@@ -187,7 +187,7 @@ build_info:
output: "target/executable/io/publish_results"
executable: "target/executable/io/publish_results/publish_results"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/io/publish_results/publish_results
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@@ -484,9 +484,9 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
LABEL org.opencontainers.image.description="Companion container for running component io publish_results"
LABEL org.opencontainers.image.created="2025-02-21T11:03:29Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:07Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/parallel_map/.config.vsh.yaml
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@@ -279,7 +279,7 @@ build_info:
output: "target/executable/parallel_map"
executable: "target/executable/parallel_map/parallel_map"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/parallel_map/parallel_map
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@@ -540,9 +540,9 @@ ENV STAR_BINARY=STAR
COPY STAR /usr/local/bin/$STAR_BINARY
LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
LABEL org.opencontainers.image.created="2025-02-21T11:03:31Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/report/create_report/.config.vsh.yaml
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@@ -201,7 +201,7 @@ build_info:
output: "target/executable/report/create_report"
executable: "target/executable/report/create_report/create_report"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/report/create_report/create_report
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@@ -476,9 +476,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component report create_report"
LABEL org.opencontainers.image.created="2025-02-21T11:03:31Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/stats/combine_star_logs/.config.vsh.yaml
View File

@@ -198,7 +198,7 @@ build_info:
output: "target/executable/stats/combine_star_logs"
executable: "target/executable/stats/combine_star_logs/combine_star_logs"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/stats/combine_star_logs/combine_star_logs
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@@ -490,9 +490,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont"
LABEL org.opencontainers.image.description="Companion container for running component stats combine_star_logs"
LABEL org.opencontainers.image.created="2025-02-21T11:03:28Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:09Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/stats/generate_pool_statistics/.config.vsh.yaml
View File

@@ -182,7 +182,7 @@ build_info:
output: "target/executable/stats/generate_pool_statistics"
executable: "target/executable/stats/generate_pool_statistics/generate_pool_statistics"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/stats/generate_pool_statistics/generate_pool_statistics
View File

@@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_pool_statistics"
LABEL org.opencontainers.image.created="2025-02-21T11:03:29Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER

2
target/executable/stats/generate_well_statistics/.config.vsh.yaml
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@@ -264,7 +264,7 @@ build_info:
output: "target/executable/stats/generate_well_statistics"
executable: "target/executable/stats/generate_well_statistics/generate_well_statistics"
viash_version: "0.9.0"
git_commit: "bd5b2d41718677ee367d3829447241df9733c8d3"
git_commit: "8dff52a8854120e919b3701b9501b3acbf01c65b"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"

4
target/executable/stats/generate_well_statistics/generate_well_statistics
View File

@@ -520,9 +520,9 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
LABEL org.opencontainers.image.description="Companion container for running component stats generate_well_statistics"
LABEL org.opencontainers.image.created="2025-02-21T11:03:29Z"
LABEL org.opencontainers.image.created="2025-02-28T13:27:08Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="bd5b2d41718677ee367d3829447241df9733c8d3"
LABEL org.opencontainers.image.revision="8dff52a8854120e919b3701b9501b3acbf01c65b"
LABEL org.opencontainers.image.version="main"
VIASHDOCKER