Build branch htrnaseq/v0.12 with version v0.12.3 to htrnaseq on branch v0.12 (7c7b7fe)
Build pipeline: viash-hub.htrnaseq.v0.12-77xk8
Source commit: 7c7b7fec25
Source message: Prep v0.12.3 release - update _viash.yaml
This commit is contained in:
@@ -1,6 +1,6 @@
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name: "create_pdata"
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namespace: "eset"
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version: "v0.12.2"
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version: "v0.12.3"
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authors:
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- name: "Dries Schaumont"
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roles:
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@@ -168,7 +168,7 @@ engines:
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id: "docker"
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image: "python:3.12-slim"
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target_registry: "images.viash-hub.com"
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target_tag: "v0.12.2"
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target_tag: "v0.12.3"
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namespace_separator: "/"
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setup:
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- type: "apt"
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@@ -197,11 +197,11 @@ build_info:
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output: "target/executable/eset/create_pdata"
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executable: "target/executable/eset/create_pdata/create_pdata"
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viash_version: "0.9.4"
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git_commit: "f0f85f57744b71e17ee3c0afe1a221cd20903aef"
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git_commit: "7c7b7fec254ba6b77d985706fc955449445d83f5"
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git_remote: "https://github.com/viash-hub/htrnaseq"
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package_config:
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name: "htrnaseq"
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version: "v0.12.2"
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version: "v0.12.3"
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summary: "A workflow for high-throughput RNA-seq data analyses.\n"
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description: "This workflow is designed to process high-throughput RNA-seq data,\
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\ where every\nwell of a microarray plate is a sample. A fasta file provided as\
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@@ -233,7 +233,7 @@ package_config:
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\ '_viash.yaml'}\n"
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- ".engines += { type: \"native\" }"
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- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
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- ".engines[.type == 'docker'].target_tag := 'v0.12.2'"
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- ".engines[.type == 'docker'].target_tag := 'v0.12.3'"
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keywords:
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- "bioinformatics"
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- "sequencing"
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@@ -1,5 +1,5 @@
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name: htrnaseq
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version: v0.12.2
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version: v0.12.3
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summary: |
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A workflow for high-throughput RNA-seq data analyses.
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description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"
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@@ -1,6 +1,6 @@
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#!/usr/bin/env bash
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# create_pdata v0.12.2
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# create_pdata v0.12.3
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#
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# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
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# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
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@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Dries Schaumont, Marijke Van Moerbeke"
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LABEL org.opencontainers.image.description="Companion container for running component eset create_pdata"
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LABEL org.opencontainers.image.created="2025-09-23T12:11:19Z"
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LABEL org.opencontainers.image.created="2025-10-09T12:16:22Z"
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LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
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LABEL org.opencontainers.image.revision="f0f85f57744b71e17ee3c0afe1a221cd20903aef"
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LABEL org.opencontainers.image.version="v0.12.2"
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LABEL org.opencontainers.image.revision="7c7b7fec254ba6b77d985706fc955449445d83f5"
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LABEL org.opencontainers.image.version="v0.12.3"
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VIASHDOCKER
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fi
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@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
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# ViashHelp: Display helpful explanation about this executable
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function ViashHelp {
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echo "create_pdata v0.12.2"
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echo "create_pdata v0.12.3"
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echo ""
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echo "Create a pdata file by combining the mapping statistics"
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echo ""
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@@ -653,7 +653,7 @@ while [[ $# -gt 0 ]]; do
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shift 1
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;;
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--version)
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echo "create_pdata v0.12.2"
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echo "create_pdata v0.12.3"
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exit
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;;
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--star_stats_file)
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@@ -777,7 +777,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
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# determine docker image id
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if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.12.2'
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/eset/create_pdata:v0.12.3'
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fi
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# print dockerfile
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