Build branch htrnaseq/v0.12 with version v0.12.3 to htrnaseq on branch v0.12 (7c7b7fe)

Build pipeline: viash-hub.htrnaseq.v0.12-77xk8

Source commit: 7c7b7fec25

Source message: Prep v0.12.3 release - update _viash.yaml
This commit is contained in:
CI
2025-10-09 13:08:37 +00:00
parent 050b56eea2
commit f0b6b4a45c
120 changed files with 436 additions and 430 deletions

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@@ -1,5 +1,5 @@
name: "parallel_map"
version: "v0.12.2"
version: "v0.12.3"
authors:
- name: "Dries Schaumont"
roles:
@@ -248,7 +248,7 @@ engines:
id: "docker"
image: "debian:stable-slim"
target_registry: "images.viash-hub.com"
target_tag: "v0.12.2"
target_tag: "v0.12.3"
namespace_separator: "/"
setup:
- type: "apt"
@@ -285,11 +285,11 @@ build_info:
output: "target/executable/parallel_map"
executable: "target/executable/parallel_map/parallel_map"
viash_version: "0.9.4"
git_commit: "f0f85f57744b71e17ee3c0afe1a221cd20903aef"
git_commit: "7c7b7fec254ba6b77d985706fc955449445d83f5"
git_remote: "https://github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "v0.12.2"
version: "v0.12.3"
summary: "A workflow for high-throughput RNA-seq data analyses.\n"
description: "This workflow is designed to process high-throughput RNA-seq data,\
\ where every\nwell of a microarray plate is a sample. A fasta file provided as\
@@ -321,7 +321,7 @@ package_config:
\ '_viash.yaml'}\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v0.12.2'"
- ".engines[.type == 'docker'].target_tag := 'v0.12.3'"
keywords:
- "bioinformatics"
- "sequencing"

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@@ -1,5 +1,5 @@
name: htrnaseq
version: v0.12.2
version: v0.12.3
summary: |
A workflow for high-throughput RNA-seq data analyses.
description: "This workflow is designed to process high-throughput RNA-seq data, where every\nwell of a microarray plate is a sample. A fasta file provided as input\ndefines the mapping between sample barcodes and wells.\n\nThe workflow is built in a modular fashion, where most of the base functionality\nis provided by components from [`biobox`](https://www.viash-hub.com/packages/biobox/latest)\nsupplemented by custom base components and workflow components in this package.\n\nThe full workflow is split in two major subworkflows that can be run independently:\n\n* **Well-demultiplexing:** Split the input (plate/pool level) fastq files per well.\n* **Mapping, counting and QC:** Run per-well mapping, counting and generate QC reports.\n\nEach of those can be started individually, or the full workflow can be run in two ways:\n\n1. Run the [main workflow](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/htrnaseq) \ncontaining the main functionality.\n2. Run the [(opinionated) `runner`](https://www.viash-hub.com/packages/htrnaseq/v0.3.0/components/workflows/runner) where a\nnumber of choices (input/output structure and location) have been made.\n\nInput for the workflow has to be `fastq` files (zipped or not). For bcl or other formats, please consider running\n[demultiplex](https://www.viash-hub.com/packages/demultiplex) first.\n"

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@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# parallel_map v0.12.2
# parallel_map v0.12.3
#
# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -461,10 +461,10 @@ ENV STAR_BINARY=STAR
COPY STAR /usr/local/bin/$STAR_BINARY
LABEL org.opencontainers.image.authors="Dries Schaumont, Toni Verbeiren"
LABEL org.opencontainers.image.description="Companion container for running component parallel_map"
LABEL org.opencontainers.image.created="2025-09-23T12:11:20Z"
LABEL org.opencontainers.image.created="2025-10-09T12:16:24Z"
LABEL org.opencontainers.image.source="https://github.com/viash-hub/htrnaseq"
LABEL org.opencontainers.image.revision="f0f85f57744b71e17ee3c0afe1a221cd20903aef"
LABEL org.opencontainers.image.version="v0.12.2"
LABEL org.opencontainers.image.revision="7c7b7fec254ba6b77d985706fc955449445d83f5"
LABEL org.opencontainers.image.version="v0.12.3"
VIASHDOCKER
fi
@@ -581,7 +581,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "parallel_map v0.12.2"
echo "parallel_map v0.12.3"
echo ""
echo "Map wells in batch, using STAR"
echo "Spliced Transcripts Alignment to a Reference (C) Alexander Dobin"
@@ -705,7 +705,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "parallel_map v0.12.2"
echo "parallel_map v0.12.3"
exit
;;
--input_r1)
@@ -907,7 +907,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/parallel_map:v0.12.2'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/htrnaseq/parallel_map:v0.12.3'
fi
# print dockerfile