Build branch main with version main (65dd41d)
Build pipeline: viash-hub.htrnaseq.main-vhms8
Source commit: 65dd41d8b1
Source message: Optimize spawning of processes
This commit is contained in:
@@ -110,6 +110,8 @@ resources:
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- type: "bash_script"
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path: "script.sh"
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is_executable: true
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- type: "file"
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path: "STAR"
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- type: "file"
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path: "nextflow_labels.config"
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dest: "nextflow_labels.config"
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@@ -205,26 +207,25 @@ engines:
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- type: "apt"
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packages:
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- "procps"
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- "gzip"
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- "bzip2"
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- "parallel"
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- "wget"
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- "automake"
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- "make"
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- "gcc"
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- "g++"
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- "zlib1g-dev"
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- "unzip"
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- "xxd"
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- "parallel"
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- "file"
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interactive: false
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- type: "docker"
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run:
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- "wget -O $STAR_TARGET $STAR_SOURCE && \\\n unzip $STAR_TARGET -d /tmp && \\\
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\n mv /tmp/STAR_$STAR_VERSION/Linux_x86_64_static/STAR /usr/local/bin/$STAR_BINARY\
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\ && \\\n chmod +x /usr/local/bin/$STAR_BINARY && \\\n rm $STAR_TARGET &&\
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\ rm -rf /tmp/STAR_$STAR_VERSION\n"
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copy:
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- "STAR /usr/local/bin/$STAR_BINARY"
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build_args:
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- "STAR_V=2.7.6a"
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env:
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- "STAR_VERSION \"2.7.11b\""
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- "STAR_SOURCE \"https://github.com/alexdobin/STAR/releases/download/$STAR_VERSION/STAR_$STAR_VERSION.zip\""
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- "STAR_TARGET \"/tmp/star.zip\""
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- "STAR_BINARY \"STAR\""
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- "STAR_SOURCE=\"https://github.com/alexdobin/STAR/archive/refs/tags/$STAR_V.tar.gz\""
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- "STAR_TARGET=\"/app/star-$STAR_V.tar.gz\""
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- "STAR_INSTALL_DIR=\"/app/STAR-$STAR_V\""
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- "STAR_BINARY=STAR"
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entrypoint: []
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cmd: null
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- type: "native"
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@@ -235,15 +236,18 @@ build_info:
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engine: "docker|native"
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output: "target/executable/parallel_map"
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executable: "target/executable/parallel_map/parallel_map"
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viash_version: "0.9.0-RC7"
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git_commit: "cf9797232db1306bfd5696287928cababe317d99"
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git_remote: "https://x-access-token:ghs_KjB7pWu8DQM3iFulLu7RI06qnt5K8S1A0eaE@github.com/viash-hub/htrnaseq"
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viash_version: "0.9.0"
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git_commit: "65dd41d8b1b4a307735c72320c96c0880c75f17f"
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git_remote: "https://x-access-token:ghs_McZDF0yobnnHmOEb2Q4JaaB3pzr9mz1VbIOs@github.com/viash-hub/htrnaseq"
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package_config:
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name: "htrnaseq"
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version: "main"
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description: "High-throughput pipeline [WIP]\n"
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info: null
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viash_version: "0.9.0-RC7"
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info:
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test_resources:
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- path: "gs://viash-hub-test-data/htrnaseq/v1/"
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dest: "resources_test"
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viash_version: "0.9.0"
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source: "src"
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target: "target"
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config_mods:
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