Build branch main with version main (65dd41d)

Build pipeline: viash-hub.htrnaseq.main-vhms8

Source commit: 65dd41d8b1

Source message: Optimize spawning of processes
This commit is contained in:
CI
2024-11-05 17:26:35 +00:00
parent b8abf8c490
commit f2ff92c6ac
127 changed files with 29560 additions and 1004 deletions

View File

@@ -110,6 +110,8 @@ resources:
- type: "bash_script"
path: "script.sh"
is_executable: true
- type: "file"
path: "STAR"
- type: "file"
path: "nextflow_labels.config"
dest: "nextflow_labels.config"
@@ -205,26 +207,25 @@ engines:
- type: "apt"
packages:
- "procps"
- "gzip"
- "bzip2"
- "parallel"
- "wget"
- "automake"
- "make"
- "gcc"
- "g++"
- "zlib1g-dev"
- "unzip"
- "xxd"
- "parallel"
- "file"
interactive: false
- type: "docker"
run:
- "wget -O $STAR_TARGET $STAR_SOURCE && \\\n unzip $STAR_TARGET -d /tmp && \\\
\n mv /tmp/STAR_$STAR_VERSION/Linux_x86_64_static/STAR /usr/local/bin/$STAR_BINARY\
\ && \\\n chmod +x /usr/local/bin/$STAR_BINARY && \\\n rm $STAR_TARGET &&\
\ rm -rf /tmp/STAR_$STAR_VERSION\n"
copy:
- "STAR /usr/local/bin/$STAR_BINARY"
build_args:
- "STAR_V=2.7.6a"
env:
- "STAR_VERSION \"2.7.11b\""
- "STAR_SOURCE \"https://github.com/alexdobin/STAR/releases/download/$STAR_VERSION/STAR_$STAR_VERSION.zip\""
- "STAR_TARGET \"/tmp/star.zip\""
- "STAR_BINARY \"STAR\""
- "STAR_SOURCE=\"https://github.com/alexdobin/STAR/archive/refs/tags/$STAR_V.tar.gz\""
- "STAR_TARGET=\"/app/star-$STAR_V.tar.gz\""
- "STAR_INSTALL_DIR=\"/app/STAR-$STAR_V\""
- "STAR_BINARY=STAR"
entrypoint: []
cmd: null
- type: "native"
@@ -235,15 +236,18 @@ build_info:
engine: "docker|native"
output: "target/executable/parallel_map"
executable: "target/executable/parallel_map/parallel_map"
viash_version: "0.9.0-RC7"
git_commit: "cf9797232db1306bfd5696287928cababe317d99"
git_remote: "https://x-access-token:ghs_KjB7pWu8DQM3iFulLu7RI06qnt5K8S1A0eaE@github.com/viash-hub/htrnaseq"
viash_version: "0.9.0"
git_commit: "65dd41d8b1b4a307735c72320c96c0880c75f17f"
git_remote: "https://x-access-token:ghs_McZDF0yobnnHmOEb2Q4JaaB3pzr9mz1VbIOs@github.com/viash-hub/htrnaseq"
package_config:
name: "htrnaseq"
version: "main"
description: "High-throughput pipeline [WIP]\n"
info: null
viash_version: "0.9.0-RC7"
info:
test_resources:
- path: "gs://viash-hub-test-data/htrnaseq/v1/"
dest: "resources_test"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods: