Build branch main with version main (65dd41d)

Build pipeline: viash-hub.htrnaseq.main-vhms8

Source commit: 65dd41d8b1

Source message: Optimize spawning of processes
This commit is contained in:
CI
2024-11-05 17:26:35 +00:00
parent b8abf8c490
commit f2ff92c6ac
127 changed files with 29560 additions and 1004 deletions

View File

@@ -6,23 +6,27 @@ argument_groups:
arguments:
- type: "file"
name: "--input_r1"
description: "R1"
description: "Forward reads in FASTQ format. Multiple files can be provided which\
\ will\nbe demultiplexed separately before joining the results for each individual\
\ well.\n"
info: null
must_exist: true
create_parent: true
required: true
direction: "input"
multiple: false
multiple: true
multiple_sep: ";"
- type: "file"
name: "--input_r2"
description: "R2"
description: "Reverse reads in FASTQ format. Multiple files can be provided which\
\ will\nbe demultiplexed separately before joining the results for each individual\
\ well.\n"
info: null
must_exist: true
create_parent: true
required: true
direction: "input"
multiple: false
multiple: true
multiple_sep: ";"
- type: "file"
name: "--barcodesFasta"
@@ -112,11 +116,20 @@ dependencies:
repository:
type: "vsh"
repo: "biobox"
tag: "main"
- name: "concat_text"
repository:
type: "vsh"
repo: "craftbox"
tag: "v0.1.0"
repositories:
- type: "vsh"
name: "bb"
repo: "biobox"
tag: "main"
- type: "vsh"
name: "cb"
repo: "craftbox"
tag: "v0.1.0"
license: "MIT"
links:
@@ -196,17 +209,21 @@ build_info:
engine: "native|native"
output: "target/nextflow/workflows/well_demultiplex"
executable: "target/nextflow/workflows/well_demultiplex/main.nf"
viash_version: "0.9.0-RC7"
git_commit: "cf9797232db1306bfd5696287928cababe317d99"
git_remote: "https://x-access-token:ghs_KjB7pWu8DQM3iFulLu7RI06qnt5K8S1A0eaE@github.com/viash-hub/htrnaseq"
viash_version: "0.9.0"
git_commit: "65dd41d8b1b4a307735c72320c96c0880c75f17f"
git_remote: "https://x-access-token:ghs_McZDF0yobnnHmOEb2Q4JaaB3pzr9mz1VbIOs@github.com/viash-hub/htrnaseq"
dependencies:
- "target/dependencies/vsh/vsh/biobox/v0.1.0/nextflow/cutadapt"
- "target/dependencies/vsh/vsh/biobox/main/nextflow/cutadapt"
- "target/dependencies/vsh/vsh/craftbox/v0.1.0/nextflow/concat_text"
package_config:
name: "htrnaseq"
version: "main"
description: "High-throughput pipeline [WIP]\n"
info: null
viash_version: "0.9.0-RC7"
info:
test_resources:
- path: "gs://viash-hub-test-data/htrnaseq/v1/"
dest: "resources_test"
viash_version: "0.9.0"
source: "src"
target: "target"
config_mods: