Build branch htrnaseq/main with version main to htrnaseq on branch main (92755e8)

Build pipeline: viash-hub.htrnaseq.main-666pl

Source commit: 92755e84e7

Source message: Runner: output state and rework publishing (#68)

* add eset output param

* add outputs to publishing and runner

* update publishing

* Update publishing

* Remove debug statements

* Undo change to integration test script

* Add asserts

* Fix asserts and canonicalization of publish paths

* Move fData to folder

* Add CHANGELOG entry [ci skip]

---------

Co-authored-by: Dries Schaumont <5946712+DriesSchaumont@users.noreply.github.com>

target/nextflow/stats/combine_star_logs/.config.vsh.yaml

@@ -204,9 +204,8 @@ build_info:
   output: "target/nextflow/stats/combine_star_logs"
   executable: "target/nextflow/stats/combine_star_logs/main.nf"
   viash_version: "0.9.4"
-  git_commit: "d70fdf2a6f13819db25bfe0ac9ddb14d0aa5c247"
+  git_commit: "92755e84e7e2b17cc44664388d6fbb444a26cffd"
   git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-14-gd70fdf2"
 package_config:
   name: "htrnaseq"
   version: "main"
@@ -236,7 +235,7 @@ package_config:
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script\
-    \ := 'includeConfig(\"nextflow_labels.config\")'\n.resources += {path: '/src/config/labels.config',\
+    \ += 'includeConfig(\"nextflow_labels.config\")'\n.resources += {path: '/src/config/labels.config',\
     \ dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest:\
     \ '_viash.yaml'}\n"
   - ".engines += { type: \"native\" }"

target/nextflow/stats/combine_star_logs/_viash.yaml

@@ -14,7 +14,7 @@ info:
       dest: resources_test
 config_mods: |
   .requirements.commands := ['ps']
-  .runners[.type == 'nextflow'].config.script := 'includeConfig("nextflow_labels.config")'
+  .runners[.type == 'nextflow'].config.script += 'includeConfig("nextflow_labels.config")'
   .resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}
   .resources += {path: '/_viash.yaml', dest: '_viash.yaml'}
 version: main

target/nextflow/stats/combine_star_logs/main.nf

@@ -3295,9 +3295,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/stats/combine_star_logs",
     "viash_version" : "0.9.4",
-    "git_commit" : "d70fdf2a6f13819db25bfe0ac9ddb14d0aa5c247",
-    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-14-gd70fdf2"
+    "git_commit" : "92755e84e7e2b17cc44664388d6fbb444a26cffd",
+    "git_remote" : "https://github.com/viash-hub/htrnaseq"
   },
   "package_config" : {
     "name" : "htrnaseq",
@@ -3316,7 +3315,7 @@ meta = [
     "source" : "src",
     "target" : "target",
     "config_mods" : [
-      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
+      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
       ".engines[.type == 'docker'].target_tag := 'main'"

target/nextflow/stats/generate_pool_statistics/.config.vsh.yaml

@@ -188,9 +188,8 @@ build_info:
   output: "target/nextflow/stats/generate_pool_statistics"
   executable: "target/nextflow/stats/generate_pool_statistics/main.nf"
   viash_version: "0.9.4"
-  git_commit: "d70fdf2a6f13819db25bfe0ac9ddb14d0aa5c247"
+  git_commit: "92755e84e7e2b17cc44664388d6fbb444a26cffd"
   git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-14-gd70fdf2"
 package_config:
   name: "htrnaseq"
   version: "main"
@@ -220,7 +219,7 @@ package_config:
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script\
-    \ := 'includeConfig(\"nextflow_labels.config\")'\n.resources += {path: '/src/config/labels.config',\
+    \ += 'includeConfig(\"nextflow_labels.config\")'\n.resources += {path: '/src/config/labels.config',\
     \ dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest:\
     \ '_viash.yaml'}\n"
   - ".engines += { type: \"native\" }"

target/nextflow/stats/generate_pool_statistics/_viash.yaml

@@ -14,7 +14,7 @@ info:
       dest: resources_test
 config_mods: |
   .requirements.commands := ['ps']
-  .runners[.type == 'nextflow'].config.script := 'includeConfig("nextflow_labels.config")'
+  .runners[.type == 'nextflow'].config.script += 'includeConfig("nextflow_labels.config")'
   .resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}
   .resources += {path: '/_viash.yaml', dest: '_viash.yaml'}
 version: main

target/nextflow/stats/generate_pool_statistics/main.nf

@@ -3279,9 +3279,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/stats/generate_pool_statistics",
     "viash_version" : "0.9.4",
-    "git_commit" : "d70fdf2a6f13819db25bfe0ac9ddb14d0aa5c247",
-    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-14-gd70fdf2"
+    "git_commit" : "92755e84e7e2b17cc44664388d6fbb444a26cffd",
+    "git_remote" : "https://github.com/viash-hub/htrnaseq"
   },
   "package_config" : {
     "name" : "htrnaseq",
@@ -3300,7 +3299,7 @@ meta = [
     "source" : "src",
     "target" : "target",
     "config_mods" : [
-      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
+      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
       ".engines[.type == 'docker'].target_tag := 'main'"

target/nextflow/stats/generate_well_statistics/.config.vsh.yaml

@@ -260,9 +260,8 @@ build_info:
   output: "target/nextflow/stats/generate_well_statistics"
   executable: "target/nextflow/stats/generate_well_statistics/main.nf"
   viash_version: "0.9.4"
-  git_commit: "d70fdf2a6f13819db25bfe0ac9ddb14d0aa5c247"
+  git_commit: "92755e84e7e2b17cc44664388d6fbb444a26cffd"
   git_remote: "https://github.com/viash-hub/htrnaseq"
-  git_tag: "v0.7.2-14-gd70fdf2"
 package_config:
   name: "htrnaseq"
   version: "main"
@@ -292,7 +291,7 @@ package_config:
   target: "target"
   config_mods:
   - ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script\
-    \ := 'includeConfig(\"nextflow_labels.config\")'\n.resources += {path: '/src/config/labels.config',\
+    \ += 'includeConfig(\"nextflow_labels.config\")'\n.resources += {path: '/src/config/labels.config',\
     \ dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest:\
     \ '_viash.yaml'}\n"
   - ".engines += { type: \"native\" }"

target/nextflow/stats/generate_well_statistics/_viash.yaml

@@ -14,7 +14,7 @@ info:
       dest: resources_test
 config_mods: |
   .requirements.commands := ['ps']
-  .runners[.type == 'nextflow'].config.script := 'includeConfig("nextflow_labels.config")'
+  .runners[.type == 'nextflow'].config.script += 'includeConfig("nextflow_labels.config")'
   .resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}
   .resources += {path: '/_viash.yaml', dest: '_viash.yaml'}
 version: main

target/nextflow/stats/generate_well_statistics/main.nf

@@ -3361,9 +3361,8 @@ meta = [
     "engine" : "docker|native",
     "output" : "target/nextflow/stats/generate_well_statistics",
     "viash_version" : "0.9.4",
-    "git_commit" : "d70fdf2a6f13819db25bfe0ac9ddb14d0aa5c247",
-    "git_remote" : "https://github.com/viash-hub/htrnaseq",
-    "git_tag" : "v0.7.2-14-gd70fdf2"
+    "git_commit" : "92755e84e7e2b17cc44664388d6fbb444a26cffd",
+    "git_remote" : "https://github.com/viash-hub/htrnaseq"
   },
   "package_config" : {
     "name" : "htrnaseq",
@@ -3382,7 +3381,7 @@ meta = [
     "source" : "src",
     "target" : "target",
     "config_mods" : [
-      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
+      ".requirements.commands := ['ps']\n.runners[.type == 'nextflow'].config.script += 'includeConfig(\\"nextflow_labels.config\\")'\n.resources += {path: '/src/config/labels.config', dest: 'nextflow_labels.config'}\n.resources += {path: '/_viash.yaml', dest: '_viash.yaml'}\n",
       ".engines += { type: \\"native\\" }",
       ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'",
       ".engines[.type == 'docker'].target_tag := 'main'"