CI
c27267ad00
Build pipeline: viash-hub.htrnaseq.v0.14.0-pk2tm
Source commit: eeda989650
Source message: Bump version to v0.14.0
57 lines
2.0 KiB
JSON
57 lines
2.0 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "create_pdata",
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"description": "Create a pdata file by combining the mapping statistics \n",
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"type": "object",
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"$defs": {
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"arguments": {
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"title": "Arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"star_stats_file": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "Tab-delimited text file containing statistics (per column) that were generated\nfrom the STAR log files (Log.final.out, Summary.csv, ReadsPerGene.out.tab).\nEach entry (row) in the file describes the values for one well (barcode).\n",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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},
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"nrReadsNrGenesPerChromPool": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "Pivot table in tsv format of the combined nrReadsNrGenesPerChrom files from STAR",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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},
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"output": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"pData.$id.txt\"`, direction: `output`. ",
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"default": "pData.$id.txt"
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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