CI
c27267ad00
Build pipeline: viash-hub.htrnaseq.v0.14.0-pk2tm
Source commit: eeda989650
Source message: Bump version to v0.14.0
124 lines
3.9 KiB
JSON
124 lines
3.9 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "well_metadata",
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"description": "No description",
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"type": "object",
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"$defs": {
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"input arguments": {
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"title": "Input arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"input_r1": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "List of FASTQ files for the forward reads, 1 per well.\n",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"input_r2": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "List of FASTQ files for the forward reads, 1 per well.\n",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"star_mapping": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"barcodesFasta": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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}
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}
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},
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"output arguments": {
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"title": "Output arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"output_r1": {
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"type": "string",
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"format": "path",
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"description": "Output fastq file.",
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"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output_r1\"`, direction: `output`. ",
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"default": "$id.$key.output_r1"
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},
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"output_r2": {
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"type": "string",
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"format": "path",
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"description": "Output fastq file.",
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"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output_r2\"`, direction: `output`. ",
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"default": "$id.$key.output_r2"
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},
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"pool": {
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"type": "string",
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"description": "The original pool / sample name",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"well_id": {
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"type": "string",
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"description": "",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"barcode": {
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"type": "string",
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"description": "",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"n_wells": {
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"type": "integer",
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"description": "The number of wells in the pool is well is a part of.",
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"help_text": "Type: `integer`, multiple: `False`. "
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},
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"well_star_mapping": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.well_star_mapping\"`, direction: `output`. ",
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"default": "$id.$key.well_star_mapping"
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/input arguments"
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},
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{
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"$ref": "#/$defs/output arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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