CI
ef4cabdcee
Build pipeline: viash-hub.htrnaseq.main-fmznz
Source commit: a3b7ae3f31
Source message: update biobox and craftbox versions (#60)
* update biobox and craftbox versions
* update changelog
83 lines
2.7 KiB
JSON
83 lines
2.7 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "listInputDir",
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"description": "List the contents of a directory and parse contained fastq files",
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"type": "object",
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"$defs": {
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"arguments": {
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"title": "Arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"input": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "Path to the directory containing fastq files",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`, example: `\"fastq_dir\"`. "
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},
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"ignore": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"description": "Pool names to ignore.",
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"help_text": "Type: `string`, multiple: `True`, default: `[\"Undetermined\"]`. ",
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"default": [
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"Undetermined"
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]
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},
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"r1_output": {
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"type": "string",
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"format": "path",
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"description": "Path to read 1 fastq/fasta file",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.r1_output\"`, direction: `output`. ",
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"default": "$id.$key.r1_output"
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},
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"r2_output": {
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"type": "string",
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"format": "path",
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"description": "Path to read 2 fastq/fasta file",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.r2_output\"`, direction: `output`. ",
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"default": "$id.$key.r2_output"
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},
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"lane": {
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"type": "string",
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"description": "Lane nr",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"sample": {
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"type": "string",
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"description": "Sample nr",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"sample_id": {
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"type": "string",
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"description": "Sample name",
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"help_text": "Type: `string`, multiple: `False`. "
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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