CI
8bc82c81e3
Build pipeline: viash-hub.htrnaseq.v0.14.7-lr47z
Source commit: 07ba686a46
Source message: Bump version to v0.14.7
200 lines
6.4 KiB
JSON
200 lines
6.4 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "publish_results",
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"description": "Publish the results",
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"type": "object",
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"$defs": {
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"input arguments": {
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"title": "Input arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"star_output": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "Output from mapping with STAR",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"nrReadsNrGenesPerChrom": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"star_qc_metrics": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"eset": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"f_data": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"p_data": {
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"type": "array",
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"items": {
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"type": "string"
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},
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `True`, required, direction: `input`. "
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},
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"html_report": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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},
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"run_params": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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},
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"run_metadata": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`. "
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}
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}
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},
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"output directory": {
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"title": "Output directory",
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"type": "object",
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"description": "Determines the name of output directories\n",
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"properties": {
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"star_output_dir": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"star_output\"`, direction: `output`. ",
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"default": "star_output"
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},
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"nrReadsNrGenesPerChrom_dir": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"nrReadsNrGenesPerChrom\"`, direction: `output`. ",
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"default": "nrReadsNrGenesPerChrom"
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},
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"star_qc_metrics_dir": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"starLogs\"`, direction: `output`. ",
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"default": "starLogs"
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},
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"eset_dir": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"esets\"`, direction: `output`. ",
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"default": "esets"
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},
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"f_data_dir": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"fData\"`, direction: `output`. ",
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"default": "fData"
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},
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"p_data_dir": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"pData\"`, direction: `output`. ",
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"default": "pData"
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}
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}
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},
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"output file arguments": {
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"title": "Output file arguments",
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"type": "object",
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"description": "Determines the name of output files",
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"properties": {
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"run_params_output": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.run_params_output\"`, direction: `output`. ",
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"default": "$id.$key.run_params_output"
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},
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"run_metadata_output": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.run_metadata_output\"`, direction: `output`. ",
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"default": "$id.$key.run_metadata_output"
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},
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"html_report_output": {
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"type": "string",
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"format": "path",
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"description": "",
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"help_text": "Type: `file`, multiple: `False`, default: `\"$id.$key.html_report_output\"`, direction: `output`. ",
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"default": "$id.$key.html_report_output"
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/input arguments"
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},
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{
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"$ref": "#/$defs/output directory"
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},
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{
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"$ref": "#/$defs/output file arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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