CI
9b2ecfba86
Build pipeline: viash-hub.htrnaseq.fix-lane-concatenation-zdkb7
Source commit: 01da9874c4
Source message: Trigger CI
34 lines
871 B
R
34 lines
871 B
R
library(whisker)
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library(logger)
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log_info("Setting temporary directory to: {meta$temp_dir}")
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Sys.setenv(TMP = meta$temp_dir)
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temp_folder <- tempdir(check = TRUE)
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log_info("Created temporary directory {temp_folder}")
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template <- file.path(meta$resources_dir, "template.Rmd")
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esets_normalized <- lapply(par$eset, function(eset_path) {
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return(file.path(normalizePath(dirname(eset_path)), basename(eset_path)))
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})
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log_info(paste0(
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"Rendering markdown {template} to HTML ",
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"{par$output_report} with esets {paste(esets_normalized, collapse = ', ')}"
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))
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rmarkdown::render(
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normalizePath(template),
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output_file = basename(par$output_report),
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output_dir = dirname(par$output_report),
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runtime = "static",
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intermediates_dir = par$report_dir,
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clean = TRUE,
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params = list(
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esets = esets_normalized,
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outputDir = par$report_dir
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)
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)
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log_info("Done")
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