CI
cffdada450
Build pipeline: viash-hub.htrnaseq.refactor-runner-6rg7b
Source commit: 5786c8fd1e
Source message: The well_fastqs_to_esets has no test resources
53 lines
1.2 KiB
YAML
53 lines
1.2 KiB
YAML
name: listInputDir
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namespace: utils
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scope: "private"
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description: List the contents of a directory and parse contained fastq files
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arguments:
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- name: "--input"
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alternatives: [-i]
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type: file
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description: Path to the directory containing fastq files
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required: true
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example: fastq_dir
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- name: --pools
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description: "Pool names to include. By default all pools are selected for analysis."
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type: string
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multiple: true
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- name: "--r1_output"
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type: file
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# Allow multiple lanes
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multiple: true
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description: Path to read 1 fastq/fasta file
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direction: output
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- name: "--r2_output"
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type: file
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# Allow multiple lanes
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multiple: true
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description: Path to read 2 fastq/fasta file
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direction: output
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- name: "--lane"
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type: string
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# Allow multiple lanes
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multiple: true
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description: Lane nr
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direction: output
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- name: "--sample"
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type: string
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description: Sample nr
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direction: output
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- name: "--sample_id"
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type: string
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description: Sample name
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direction: output
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resources:
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- type: nextflow_script
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path: main.nf
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entrypoint: run_wf
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runners:
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- type: nextflow
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engines:
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- type: native
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