{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "title": "make_params",
  "description": "Looks for files in a directory and turn it in a params file.",
  "type": "object",
  "$defs": {
    "arguments": {
      "title": "Arguments",
      "type": "object",
      "description": "No description",
      "properties": {
        "base_dir": {
          "type": "string",
          "format": "path",
          "exists": true,
          "description": "Base directory to search recursively",
          "help_text": "Type: `file`, multiple: `False`, required, direction: `input`, example: `\"/path/to/dir\"`. "
        },
        "pattern": {
          "type": "string",
          "description": "An optional regular expression",
          "help_text": "Type: `string`, multiple: `False`, required, example: `\"*.fastq.gz\"`. "
        },
        "n_dirname_drop": {
          "type": "integer",
          "description": "For every matched file, the parent directory will be traversed N times.",
          "help_text": "Type: `integer`, multiple: `False`, default: `0`. ",
          "default": 0
        },
        "n_basename_id": {
          "type": "integer",
          "description": "The unique identifiers will consist of at least N dirnames.",
          "help_text": "Type: `integer`, multiple: `False`, default: `0`. ",
          "default": 0
        },
        "id_name": {
          "type": "string",
          "description": "The name for storing the identifier field in the yaml.",
          "help_text": "Type: `string`, multiple: `False`, default: `\"id\"`. ",
          "default": "id"
        },
        "path_name": {
          "type": "string",
          "description": "The name for storing the path field in the yaml.",
          "help_text": "Type: `string`, multiple: `False`, default: `\"path\"`. ",
          "default": "path"
        },
        "group_name": {
          "type": "string",
          "description": "Top level name for the group of entries.",
          "help_text": "Type: `string`, multiple: `False`, example: `\"param_list\"`. "
        },
        "output": {
          "type": "string",
          "format": "path",
          "description": "Output YAML file.",
          "help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output.yaml\"`, direction: `output`, example: `\"params.yaml\"`. ",
          "default": "$id.$key.output.yaml"
        }
      }
    },
    "nextflow input-output arguments": {
      "title": "Nextflow input-output arguments",
      "type": "object",
      "description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
      "properties": {
        "publish_dir": {
          "type": "string",
          "description": "Path to an output directory.",
          "help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
        }
      }
    }
  },
  "allOf": [
    {
      "$ref": "#/$defs/arguments"
    },
    {
      "$ref": "#/$defs/nextflow input-output arguments"
    }
  ]
}
