From 29ec685ff29f1b4159b6e0f85dd3c220d94f98e1 Mon Sep 17 00:00:00 2001 From: CI Date: Mon, 18 Nov 2024 10:10:50 +0000 Subject: [PATCH] Build branch fix-integration-tests with version fix-integration-tests (5e3f3231) Build pipeline: vsh-ci-dev-9jqlj Source commit: https://github.com/openpipelines-bio/openpipeline/commit/5e3f3231456facaf14da57fa563d4de58492ca82 Source message: Fix config error --- .../process_batches/workflow_test/config.vsh.yaml | 4 +++- .../process_batches/workflow_test2/config.vsh.yaml | 4 +++- .../executable/annotate/celltypist/.config.vsh.yaml | 6 +++--- target/executable/annotate/celltypist/celltypist | 4 ++-- target/executable/annotate/onclass/.config.vsh.yaml | 6 +++--- target/executable/annotate/onclass/onclass | 4 ++-- target/executable/annotate/popv/.config.vsh.yaml | 6 +++--- target/executable/annotate/popv/popv | 4 ++-- .../random_forest_annotation/.config.vsh.yaml | 6 +++--- .../random_forest_annotation | 4 ++-- target/executable/annotate/scanvi/.config.vsh.yaml | 6 +++--- target/executable/annotate/scanvi/scanvi | 4 ++-- .../annotate/svm_annotation/.config.vsh.yaml | 6 +++--- .../annotate/svm_annotation/svm_annotation | 4 ++-- target/executable/cluster/leiden/.config.vsh.yaml | 6 +++--- target/executable/cluster/leiden/leiden | 4 ++-- .../compression/compress_h5mu/.config.vsh.yaml | 6 +++--- .../compression/compress_h5mu/compress_h5mu | 4 ++-- .../compression/tar_extract/.config.vsh.yaml | 6 +++--- .../executable/compression/tar_extract/tar_extract | 4 ++-- .../convert/from_10xh5_to_h5mu/.config.vsh.yaml | 6 +++--- .../convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu | 4 ++-- .../convert/from_10xmtx_to_h5mu/.config.vsh.yaml | 6 +++--- .../convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu | 4 ++-- .../.config.vsh.yaml | 6 +++--- .../from_bd_to_10x_molecular_barcode_tags | 4 ++-- .../convert/from_bdrhap_to_h5mu/.config.vsh.yaml | 6 +++--- .../convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu | 4 ++-- .../from_cellranger_multi_to_h5mu/.config.vsh.yaml | 6 +++--- .../from_cellranger_multi_to_h5mu | 4 ++-- .../convert/from_h5ad_to_h5mu/.config.vsh.yaml | 6 +++--- .../convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu | 4 ++-- .../convert/from_h5mu_to_h5ad/.config.vsh.yaml | 6 +++--- .../convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad | 4 ++-- .../convert/from_h5mu_to_seurat/.config.vsh.yaml | 6 +++--- .../convert/from_h5mu_to_seurat/from_h5mu_to_seurat | 4 ++-- .../convert/velocyto_to_h5mu/.config.vsh.yaml | 6 +++--- .../convert/velocyto_to_h5mu/velocyto_to_h5mu | 4 ++-- .../cellbender_remove_background/.config.vsh.yaml | 6 +++--- .../cellbender_remove_background | 4 ++-- .../.config.vsh.yaml | 6 +++--- .../cellbender_remove_background_v0_2 | 4 ++-- .../dataflow/concatenate_h5mu/.config.vsh.yaml | 6 +++--- .../dataflow/concatenate_h5mu/concatenate_h5mu | 4 ++-- target/executable/dataflow/merge/.config.vsh.yaml | 6 +++--- target/executable/dataflow/merge/merge | 4 ++-- .../executable/dataflow/split_h5mu/.config.vsh.yaml | 6 +++--- target/executable/dataflow/split_h5mu/split_h5mu | 4 ++-- .../dataflow/split_h5mu_train_test/.config.vsh.yaml | 6 +++--- .../split_h5mu_train_test/split_h5mu_train_test | 4 ++-- .../dataflow/split_modalities/.config.vsh.yaml | 6 +++--- .../dataflow/split_modalities/split_modalities | 4 ++-- target/executable/demux/bcl2fastq/.config.vsh.yaml | 6 +++--- target/executable/demux/bcl2fastq/bcl2fastq | 4 ++-- target/executable/demux/bcl_convert/.config.vsh.yaml | 6 +++--- target/executable/demux/bcl_convert/bcl_convert | 4 ++-- .../demux/cellranger_atac_mkfastq/.config.vsh.yaml | 6 +++--- .../cellranger_atac_mkfastq/cellranger_atac_mkfastq | 4 ++-- .../demux/cellranger_mkfastq/.config.vsh.yaml | 6 +++--- .../demux/cellranger_mkfastq/cellranger_mkfastq | 4 ++-- target/executable/dimred/densmap/.config.vsh.yaml | 6 +++--- target/executable/dimred/densmap/densmap | 4 ++-- target/executable/dimred/lsi/.config.vsh.yaml | 6 +++--- target/executable/dimred/lsi/lsi | 4 ++-- target/executable/dimred/pca/.config.vsh.yaml | 6 +++--- target/executable/dimred/pca/pca | 4 ++-- target/executable/dimred/tsne/.config.vsh.yaml | 6 +++--- target/executable/dimred/tsne/tsne | 4 ++-- target/executable/dimred/umap/.config.vsh.yaml | 6 +++--- target/executable/dimred/umap/umap | 4 ++-- .../download/download_file/.config.vsh.yaml | 6 +++--- .../executable/download/download_file/download_file | 4 ++-- .../download/sync_test_resources/.config.vsh.yaml | 6 +++--- .../download/sync_test_resources/sync_test_resources | 4 ++-- .../highly_variable_features_scanpy/.config.vsh.yaml | 6 +++--- .../highly_variable_features_scanpy | 4 ++-- .../score_genes_cell_cycle_scanpy/.config.vsh.yaml | 6 +++--- .../score_genes_cell_cycle_scanpy | 4 ++-- .../score_genes_scanpy/.config.vsh.yaml | 6 +++--- .../score_genes_scanpy/score_genes_scanpy | 4 ++-- target/executable/files/make_params/.config.vsh.yaml | 6 +++--- target/executable/files/make_params/make_params | 4 ++-- .../filter/delimit_fraction/.config.vsh.yaml | 6 +++--- .../filter/delimit_fraction/delimit_fraction | 4 ++-- target/executable/filter/do_filter/.config.vsh.yaml | 6 +++--- target/executable/filter/do_filter/do_filter | 4 ++-- .../filter/filter_with_counts/.config.vsh.yaml | 6 +++--- .../filter/filter_with_counts/filter_with_counts | 4 ++-- .../filter/filter_with_scrublet/.config.vsh.yaml | 6 +++--- .../filter/filter_with_scrublet/filter_with_scrublet | 4 ++-- .../executable/filter/intersect_obs/.config.vsh.yaml | 6 +++--- target/executable/filter/intersect_obs/intersect_obs | 4 ++-- .../filter/remove_modality/.config.vsh.yaml | 6 +++--- .../filter/remove_modality/remove_modality | 4 ++-- .../executable/filter/subset_h5mu/.config.vsh.yaml | 6 +++--- target/executable/filter/subset_h5mu/subset_h5mu | 4 ++-- .../executable/filter/subset_obsp/.config.vsh.yaml | 6 +++--- target/executable/filter/subset_obsp/subset_obsp | 4 ++-- .../genetic_demux/bcftools/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/bcftools/bcftools | 4 ++-- .../genetic_demux/cellsnp/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/cellsnp/cellsnp | 4 ++-- .../genetic_demux/demuxlet/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/demuxlet/demuxlet | 4 ++-- .../genetic_demux/dsc_pileup/.config.vsh.yaml | 6 +++--- .../executable/genetic_demux/dsc_pileup/dsc_pileup | 4 ++-- .../genetic_demux/freebayes/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/freebayes/freebayes | 4 ++-- .../genetic_demux/freemuxlet/.config.vsh.yaml | 6 +++--- .../executable/genetic_demux/freemuxlet/freemuxlet | 4 ++-- .../genetic_demux/samtools/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/samtools/samtools | 4 ++-- .../genetic_demux/scsplit/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/scsplit/scsplit | 4 ++-- .../genetic_demux/souporcell/.config.vsh.yaml | 6 +++--- .../executable/genetic_demux/souporcell/souporcell | 4 ++-- .../executable/genetic_demux/vireo/.config.vsh.yaml | 6 +++--- target/executable/genetic_demux/vireo/vireo | 4 ++-- .../executable/integrate/harmonypy/.config.vsh.yaml | 6 +++--- target/executable/integrate/harmonypy/harmonypy | 4 ++-- .../executable/integrate/scanorama/.config.vsh.yaml | 6 +++--- target/executable/integrate/scanorama/scanorama | 4 ++-- .../executable/integrate/scarches/.config.vsh.yaml | 6 +++--- target/executable/integrate/scarches/scarches | 4 ++-- target/executable/integrate/scvi/.config.vsh.yaml | 6 +++--- target/executable/integrate/scvi/scvi | 4 ++-- target/executable/integrate/totalvi/.config.vsh.yaml | 6 +++--- target/executable/integrate/totalvi/totalvi | 4 ++-- target/executable/interpret/lianapy/.config.vsh.yaml | 6 +++--- target/executable/interpret/lianapy/lianapy | 4 ++-- .../executable/labels_transfer/knn/.config.vsh.yaml | 6 +++--- target/executable/labels_transfer/knn/knn | 4 ++-- .../labels_transfer/xgboost/.config.vsh.yaml | 6 +++--- target/executable/labels_transfer/xgboost/xgboost | 4 ++-- .../executable/mapping/bd_rhapsody/.config.vsh.yaml | 6 +++--- target/executable/mapping/bd_rhapsody/bd_rhapsody | 4 ++-- .../mapping/cellranger_atac_count/.config.vsh.yaml | 6 +++--- .../cellranger_atac_count/cellranger_atac_count | 4 ++-- .../mapping/cellranger_count/.config.vsh.yaml | 6 +++--- .../mapping/cellranger_count/cellranger_count | 4 ++-- .../mapping/cellranger_count_split/.config.vsh.yaml | 6 +++--- .../cellranger_count_split/cellranger_count_split | 4 ++-- .../mapping/cellranger_multi/.config.vsh.yaml | 6 +++--- .../mapping/cellranger_multi/cellranger_multi | 4 ++-- .../executable/mapping/htseq_count/.config.vsh.yaml | 6 +++--- target/executable/mapping/htseq_count/htseq_count | 4 ++-- .../mapping/htseq_count_to_h5mu/.config.vsh.yaml | 6 +++--- .../mapping/htseq_count_to_h5mu/htseq_count_to_h5mu | 4 ++-- .../executable/mapping/multi_star/.config.vsh.yaml | 6 +++--- target/executable/mapping/multi_star/multi_star | 4 ++-- .../mapping/multi_star_to_h5mu/.config.vsh.yaml | 6 +++--- .../mapping/multi_star_to_h5mu/multi_star_to_h5mu | 4 ++-- .../mapping/samtools_sort/.config.vsh.yaml | 6 +++--- .../executable/mapping/samtools_sort/samtools_sort | 4 ++-- .../executable/mapping/star_align/.config.vsh.yaml | 6 +++--- target/executable/mapping/star_align/star_align | 4 ++-- .../mapping/star_align_v273a/.config.vsh.yaml | 6 +++--- .../mapping/star_align_v273a/star_align_v273a | 4 ++-- target/executable/metadata/add_id/.config.vsh.yaml | 6 +++--- target/executable/metadata/add_id/add_id | 4 ++-- target/executable/metadata/copy_obs/.config.vsh.yaml | 6 +++--- target/executable/metadata/copy_obs/copy_obs | 4 ++-- .../metadata/duplicate_var/.config.vsh.yaml | 6 +++--- .../executable/metadata/duplicate_var/duplicate_var | 4 ++-- .../metadata/grep_annotation_column/.config.vsh.yaml | 6 +++--- .../grep_annotation_column/grep_annotation_column | 4 ++-- target/executable/metadata/join_csv/.config.vsh.yaml | 6 +++--- target/executable/metadata/join_csv/join_csv | 4 ++-- .../metadata/join_uns_to_obs/.config.vsh.yaml | 6 +++--- .../metadata/join_uns_to_obs/join_uns_to_obs | 4 ++-- .../metadata/move_obsm_to_obs/.config.vsh.yaml | 6 +++--- .../metadata/move_obsm_to_obs/move_obsm_to_obs | 4 ++-- target/executable/neighbors/bbknn/.config.vsh.yaml | 6 +++--- target/executable/neighbors/bbknn/bbknn | 4 ++-- .../neighbors/find_neighbors/.config.vsh.yaml | 6 +++--- .../neighbors/find_neighbors/find_neighbors | 4 ++-- .../process_10xh5/filter_10xh5/.config.vsh.yaml | 6 +++--- .../process_10xh5/filter_10xh5/filter_10xh5 | 4 ++-- .../qc/calculate_qc_metrics/.config.vsh.yaml | 6 +++--- .../qc/calculate_qc_metrics/calculate_qc_metrics | 4 ++-- target/executable/qc/fastqc/.config.vsh.yaml | 6 +++--- target/executable/qc/fastqc/fastqc | 4 ++-- target/executable/qc/multiqc/.config.vsh.yaml | 6 +++--- target/executable/qc/multiqc/multiqc | 4 ++-- .../query/cellxgene_census/.config.vsh.yaml | 6 +++--- .../query/cellxgene_census/cellxgene_census | 4 ++-- .../build_bdrhap_reference/.config.vsh.yaml | 6 +++--- .../build_bdrhap_reference/build_bdrhap_reference | 4 ++-- .../build_cellranger_arc_reference/.config.vsh.yaml | 6 +++--- .../build_cellranger_arc_reference | 4 ++-- .../build_cellranger_reference/.config.vsh.yaml | 6 +++--- .../build_cellranger_reference | 4 ++-- .../reference/build_star_reference/.config.vsh.yaml | 6 +++--- .../build_star_reference/build_star_reference | 4 ++-- .../reference/cellranger_mkgtf/.config.vsh.yaml | 6 +++--- .../reference/cellranger_mkgtf/cellranger_mkgtf | 4 ++-- .../reference/make_reference/.config.vsh.yaml | 6 +++--- .../reference/make_reference/make_reference | 4 ++-- target/executable/report/mermaid/.config.vsh.yaml | 6 +++--- target/executable/report/mermaid/mermaid | 4 ++-- target/executable/scgpt/binning/.config.vsh.yaml | 6 +++--- target/executable/scgpt/binning/binning | 4 ++-- .../scgpt/cell_type_annotation/.config.vsh.yaml | 6 +++--- .../scgpt/cell_type_annotation/cell_type_annotation | 4 ++-- .../scgpt/cross_check_genes/.config.vsh.yaml | 6 +++--- .../scgpt/cross_check_genes/cross_check_genes | 4 ++-- target/executable/scgpt/embedding/.config.vsh.yaml | 6 +++--- target/executable/scgpt/embedding/embedding | 4 ++-- .../executable/scgpt/pad_tokenize/.config.vsh.yaml | 6 +++--- target/executable/scgpt/pad_tokenize/pad_tokenize | 4 ++-- .../ingestion/bd_rhapsody_test/.config.vsh.yaml | 6 +++--- .../ingestion/bd_rhapsody_test/bd_rhapsody_test | 4 ++-- .../cellranger_mapping_test/.config.vsh.yaml | 6 +++--- .../cellranger_mapping_test/cellranger_mapping_test | 4 ++-- .../ingestion/cellranger_multi_test/.config.vsh.yaml | 6 +++--- .../cellranger_multi_test/cellranger_multi_test | 4 ++-- .../cellranger_postprocessing_test/.config.vsh.yaml | 6 +++--- .../cellranger_postprocessing_test | 4 ++-- .../ingestion/conversion_test/.config.vsh.yaml | 6 +++--- .../ingestion/conversion_test/conversion_test | 4 ++-- .../dimensionality_reduction_test/.config.vsh.yaml | 6 +++--- .../dimensionality_reduction_test | 4 ++-- .../process_batches/workflow_test/.config.vsh.yaml | 8 +++++--- .../process_batches/workflow_test/workflow_test | 4 ++-- .../process_batches/workflow_test2/.config.vsh.yaml | 8 +++++--- .../process_batches/workflow_test2/workflow_test2 | 4 ++-- .../split_modalities_test/.config.vsh.yaml | 6 +++--- .../split_modalities_test/split_modalities_test | 4 ++-- .../test_workflows/qc/qc_test/.config.vsh.yaml | 6 +++--- target/executable/test_workflows/qc/qc_test/qc_test | 4 ++-- target/executable/transfer/publish/.config.vsh.yaml | 6 +++--- target/executable/transfer/publish/publish | 4 ++-- .../transform/bpcells_regress_out/.config.vsh.yaml | 6 +++--- .../bpcells_regress_out/bpcells_regress_out | 4 ++-- target/executable/transform/clr/.config.vsh.yaml | 6 +++--- target/executable/transform/clr/clr | 4 ++-- .../transform/delete_layer/.config.vsh.yaml | 6 +++--- .../executable/transform/delete_layer/delete_layer | 4 ++-- target/executable/transform/log1p/.config.vsh.yaml | 6 +++--- target/executable/transform/log1p/log1p | 4 ++-- .../executable/transform/move_layer/.config.vsh.yaml | 6 +++--- target/executable/transform/move_layer/move_layer | 4 ++-- .../transform/normalize_total/.config.vsh.yaml | 6 +++--- .../transform/normalize_total/normalize_total | 4 ++-- .../transform/regress_out/.config.vsh.yaml | 6 +++--- target/executable/transform/regress_out/regress_out | 4 ++-- target/executable/transform/scale/.config.vsh.yaml | 6 +++--- target/executable/transform/scale/scale | 4 ++-- target/executable/transform/tfidf/.config.vsh.yaml | 6 +++--- target/executable/transform/tfidf/tfidf | 4 ++-- target/executable/velocity/scvelo/.config.vsh.yaml | 6 +++--- target/executable/velocity/scvelo/scvelo | 4 ++-- target/executable/velocity/velocyto/.config.vsh.yaml | 6 +++--- target/executable/velocity/velocyto/velocyto | 4 ++-- target/nextflow/annotate/celltypist/.config.vsh.yaml | 6 +++--- target/nextflow/annotate/celltypist/main.nf | 6 +++--- target/nextflow/annotate/onclass/.config.vsh.yaml | 6 +++--- target/nextflow/annotate/onclass/main.nf | 6 +++--- target/nextflow/annotate/popv/.config.vsh.yaml | 6 +++--- target/nextflow/annotate/popv/main.nf | 6 +++--- .../random_forest_annotation/.config.vsh.yaml | 6 +++--- .../annotate/random_forest_annotation/main.nf | 6 +++--- target/nextflow/annotate/scanvi/.config.vsh.yaml | 6 +++--- target/nextflow/annotate/scanvi/main.nf | 6 +++--- .../annotate/svm_annotation/.config.vsh.yaml | 6 +++--- target/nextflow/annotate/svm_annotation/main.nf | 6 +++--- target/nextflow/cluster/leiden/.config.vsh.yaml | 6 +++--- target/nextflow/cluster/leiden/main.nf | 6 +++--- .../compression/compress_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/compression/compress_h5mu/main.nf | 6 +++--- .../compression/tar_extract/.config.vsh.yaml | 6 +++--- target/nextflow/compression/tar_extract/main.nf | 6 +++--- .../convert/from_10xh5_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/convert/from_10xh5_to_h5mu/main.nf | 6 +++--- .../convert/from_10xmtx_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/convert/from_10xmtx_to_h5mu/main.nf | 6 +++--- .../.config.vsh.yaml | 6 +++--- .../from_bd_to_10x_molecular_barcode_tags/main.nf | 6 +++--- .../convert/from_bdrhap_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/convert/from_bdrhap_to_h5mu/main.nf | 6 +++--- .../from_cellranger_multi_to_h5mu/.config.vsh.yaml | 6 +++--- .../convert/from_cellranger_multi_to_h5mu/main.nf | 6 +++--- .../convert/from_h5ad_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/convert/from_h5ad_to_h5mu/main.nf | 6 +++--- .../convert/from_h5mu_to_h5ad/.config.vsh.yaml | 6 +++--- target/nextflow/convert/from_h5mu_to_h5ad/main.nf | 6 +++--- .../convert/from_h5mu_to_seurat/.config.vsh.yaml | 6 +++--- target/nextflow/convert/from_h5mu_to_seurat/main.nf | 6 +++--- .../convert/velocyto_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/convert/velocyto_to_h5mu/main.nf | 6 +++--- .../cellbender_remove_background/.config.vsh.yaml | 6 +++--- .../correction/cellbender_remove_background/main.nf | 6 +++--- .../.config.vsh.yaml | 6 +++--- .../cellbender_remove_background_v0_2/main.nf | 6 +++--- .../dataflow/concatenate_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/dataflow/concatenate_h5mu/main.nf | 6 +++--- target/nextflow/dataflow/merge/.config.vsh.yaml | 6 +++--- target/nextflow/dataflow/merge/main.nf | 6 +++--- target/nextflow/dataflow/split_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/dataflow/split_h5mu/main.nf | 6 +++--- .../dataflow/split_h5mu_train_test/.config.vsh.yaml | 6 +++--- .../nextflow/dataflow/split_h5mu_train_test/main.nf | 6 +++--- .../dataflow/split_modalities/.config.vsh.yaml | 6 +++--- target/nextflow/dataflow/split_modalities/main.nf | 6 +++--- target/nextflow/demux/bcl2fastq/.config.vsh.yaml | 6 +++--- target/nextflow/demux/bcl2fastq/main.nf | 6 +++--- target/nextflow/demux/bcl_convert/.config.vsh.yaml | 6 +++--- target/nextflow/demux/bcl_convert/main.nf | 6 +++--- .../demux/cellranger_atac_mkfastq/.config.vsh.yaml | 6 +++--- .../nextflow/demux/cellranger_atac_mkfastq/main.nf | 6 +++--- .../demux/cellranger_mkfastq/.config.vsh.yaml | 6 +++--- target/nextflow/demux/cellranger_mkfastq/main.nf | 6 +++--- target/nextflow/dimred/densmap/.config.vsh.yaml | 6 +++--- target/nextflow/dimred/densmap/main.nf | 6 +++--- target/nextflow/dimred/lsi/.config.vsh.yaml | 6 +++--- target/nextflow/dimred/lsi/main.nf | 6 +++--- target/nextflow/dimred/pca/.config.vsh.yaml | 6 +++--- target/nextflow/dimred/pca/main.nf | 6 +++--- target/nextflow/dimred/tsne/.config.vsh.yaml | 6 +++--- target/nextflow/dimred/tsne/main.nf | 6 +++--- target/nextflow/dimred/umap/.config.vsh.yaml | 6 +++--- target/nextflow/dimred/umap/main.nf | 6 +++--- .../nextflow/download/download_file/.config.vsh.yaml | 6 +++--- target/nextflow/download/download_file/main.nf | 6 +++--- .../download/sync_test_resources/.config.vsh.yaml | 6 +++--- target/nextflow/download/sync_test_resources/main.nf | 6 +++--- .../highly_variable_features_scanpy/.config.vsh.yaml | 6 +++--- .../highly_variable_features_scanpy/main.nf | 6 +++--- .../score_genes_cell_cycle_scanpy/.config.vsh.yaml | 6 +++--- .../score_genes_cell_cycle_scanpy/main.nf | 6 +++--- target/nextflow/files/make_params/.config.vsh.yaml | 6 +++--- target/nextflow/files/make_params/main.nf | 6 +++--- .../filter/delimit_fraction/.config.vsh.yaml | 6 +++--- target/nextflow/filter/delimit_fraction/main.nf | 6 +++--- target/nextflow/filter/do_filter/.config.vsh.yaml | 6 +++--- target/nextflow/filter/do_filter/main.nf | 6 +++--- .../filter/filter_with_counts/.config.vsh.yaml | 6 +++--- target/nextflow/filter/filter_with_counts/main.nf | 6 +++--- .../filter/filter_with_scrublet/.config.vsh.yaml | 6 +++--- target/nextflow/filter/filter_with_scrublet/main.nf | 6 +++--- .../nextflow/filter/intersect_obs/.config.vsh.yaml | 6 +++--- target/nextflow/filter/intersect_obs/main.nf | 6 +++--- .../nextflow/filter/remove_modality/.config.vsh.yaml | 6 +++--- target/nextflow/filter/remove_modality/main.nf | 6 +++--- target/nextflow/filter/subset_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/filter/subset_h5mu/main.nf | 6 +++--- target/nextflow/filter/subset_obsp/.config.vsh.yaml | 6 +++--- target/nextflow/filter/subset_obsp/main.nf | 6 +++--- .../nextflow/genetic_demux/bcftools/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/bcftools/main.nf | 6 +++--- .../nextflow/genetic_demux/cellsnp/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/cellsnp/main.nf | 6 +++--- .../nextflow/genetic_demux/demuxlet/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/demuxlet/main.nf | 6 +++--- .../genetic_demux/dsc_pileup/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/dsc_pileup/main.nf | 6 +++--- .../genetic_demux/freebayes/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/freebayes/main.nf | 6 +++--- .../genetic_demux/freemuxlet/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/freemuxlet/main.nf | 6 +++--- .../nextflow/genetic_demux/samtools/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/samtools/main.nf | 6 +++--- .../nextflow/genetic_demux/scsplit/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/scsplit/main.nf | 6 +++--- .../genetic_demux/souporcell/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/souporcell/main.nf | 6 +++--- target/nextflow/genetic_demux/vireo/.config.vsh.yaml | 6 +++--- target/nextflow/genetic_demux/vireo/main.nf | 6 +++--- target/nextflow/integrate/harmonypy/.config.vsh.yaml | 6 +++--- target/nextflow/integrate/harmonypy/main.nf | 6 +++--- target/nextflow/integrate/scanorama/.config.vsh.yaml | 6 +++--- target/nextflow/integrate/scanorama/main.nf | 6 +++--- target/nextflow/integrate/scarches/.config.vsh.yaml | 6 +++--- target/nextflow/integrate/scarches/main.nf | 6 +++--- target/nextflow/integrate/scvi/.config.vsh.yaml | 6 +++--- target/nextflow/integrate/scvi/main.nf | 6 +++--- target/nextflow/integrate/totalvi/.config.vsh.yaml | 6 +++--- target/nextflow/integrate/totalvi/main.nf | 6 +++--- target/nextflow/interpret/lianapy/.config.vsh.yaml | 6 +++--- target/nextflow/interpret/lianapy/main.nf | 6 +++--- target/nextflow/labels_transfer/knn/.config.vsh.yaml | 6 +++--- target/nextflow/labels_transfer/knn/main.nf | 6 +++--- .../labels_transfer/xgboost/.config.vsh.yaml | 6 +++--- target/nextflow/labels_transfer/xgboost/main.nf | 6 +++--- target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/bd_rhapsody/main.nf | 6 +++--- .../mapping/cellranger_atac_count/.config.vsh.yaml | 6 +++--- .../nextflow/mapping/cellranger_atac_count/main.nf | 6 +++--- .../mapping/cellranger_count/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/cellranger_count/main.nf | 6 +++--- .../mapping/cellranger_count_split/.config.vsh.yaml | 6 +++--- .../nextflow/mapping/cellranger_count_split/main.nf | 6 +++--- .../mapping/cellranger_multi/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/cellranger_multi/main.nf | 6 +++--- target/nextflow/mapping/htseq_count/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/htseq_count/main.nf | 6 +++--- .../mapping/htseq_count_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/htseq_count_to_h5mu/main.nf | 6 +++--- target/nextflow/mapping/multi_star/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/multi_star/main.nf | 6 +++--- .../mapping/multi_star_to_h5mu/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/multi_star_to_h5mu/main.nf | 6 +++--- .../nextflow/mapping/samtools_sort/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/samtools_sort/main.nf | 6 +++--- target/nextflow/mapping/star_align/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/star_align/main.nf | 6 +++--- .../mapping/star_align_v273a/.config.vsh.yaml | 6 +++--- target/nextflow/mapping/star_align_v273a/main.nf | 6 +++--- target/nextflow/metadata/add_id/.config.vsh.yaml | 6 +++--- target/nextflow/metadata/add_id/main.nf | 6 +++--- target/nextflow/metadata/copy_obs/.config.vsh.yaml | 6 +++--- target/nextflow/metadata/copy_obs/main.nf | 6 +++--- .../nextflow/metadata/duplicate_var/.config.vsh.yaml | 6 +++--- target/nextflow/metadata/duplicate_var/main.nf | 6 +++--- .../metadata/grep_annotation_column/.config.vsh.yaml | 6 +++--- .../nextflow/metadata/grep_annotation_column/main.nf | 6 +++--- target/nextflow/metadata/join_csv/.config.vsh.yaml | 6 +++--- target/nextflow/metadata/join_csv/main.nf | 6 +++--- .../metadata/join_uns_to_obs/.config.vsh.yaml | 6 +++--- target/nextflow/metadata/join_uns_to_obs/main.nf | 6 +++--- .../metadata/move_obsm_to_obs/.config.vsh.yaml | 6 +++--- target/nextflow/metadata/move_obsm_to_obs/main.nf | 6 +++--- target/nextflow/neighbors/bbknn/.config.vsh.yaml | 6 +++--- target/nextflow/neighbors/bbknn/main.nf | 6 +++--- .../neighbors/find_neighbors/.config.vsh.yaml | 6 +++--- target/nextflow/neighbors/find_neighbors/main.nf | 6 +++--- .../process_10xh5/filter_10xh5/.config.vsh.yaml | 6 +++--- target/nextflow/process_10xh5/filter_10xh5/main.nf | 6 +++--- .../qc/calculate_qc_metrics/.config.vsh.yaml | 6 +++--- target/nextflow/qc/calculate_qc_metrics/main.nf | 6 +++--- target/nextflow/qc/fastqc/.config.vsh.yaml | 6 +++--- target/nextflow/qc/fastqc/main.nf | 6 +++--- target/nextflow/qc/multiqc/.config.vsh.yaml | 6 +++--- target/nextflow/qc/multiqc/main.nf | 6 +++--- .../nextflow/query/cellxgene_census/.config.vsh.yaml | 6 +++--- target/nextflow/query/cellxgene_census/main.nf | 6 +++--- .../build_bdrhap_reference/.config.vsh.yaml | 6 +++--- .../reference/build_bdrhap_reference/main.nf | 6 +++--- .../build_cellranger_arc_reference/.config.vsh.yaml | 6 +++--- .../reference/build_cellranger_arc_reference/main.nf | 6 +++--- .../build_cellranger_reference/.config.vsh.yaml | 6 +++--- .../reference/build_cellranger_reference/main.nf | 6 +++--- .../reference/build_star_reference/.config.vsh.yaml | 6 +++--- .../nextflow/reference/build_star_reference/main.nf | 6 +++--- .../reference/cellranger_mkgtf/.config.vsh.yaml | 6 +++--- target/nextflow/reference/cellranger_mkgtf/main.nf | 6 +++--- .../reference/make_reference/.config.vsh.yaml | 6 +++--- target/nextflow/reference/make_reference/main.nf | 6 +++--- target/nextflow/report/mermaid/.config.vsh.yaml | 6 +++--- target/nextflow/report/mermaid/main.nf | 6 +++--- target/nextflow/scgpt/binning/.config.vsh.yaml | 6 +++--- target/nextflow/scgpt/binning/main.nf | 6 +++--- .../scgpt/cell_type_annotation/.config.vsh.yaml | 6 +++--- target/nextflow/scgpt/cell_type_annotation/main.nf | 6 +++--- .../scgpt/cross_check_genes/.config.vsh.yaml | 6 +++--- target/nextflow/scgpt/cross_check_genes/main.nf | 6 +++--- target/nextflow/scgpt/embedding/.config.vsh.yaml | 6 +++--- target/nextflow/scgpt/embedding/main.nf | 6 +++--- target/nextflow/scgpt/pad_tokenize/.config.vsh.yaml | 6 +++--- target/nextflow/scgpt/pad_tokenize/main.nf | 6 +++--- .../ingestion/bd_rhapsody_test/.config.vsh.yaml | 6 +++--- .../ingestion/bd_rhapsody_test/main.nf | 6 +++--- .../cellranger_mapping_test/.config.vsh.yaml | 6 +++--- .../ingestion/cellranger_mapping_test/main.nf | 6 +++--- .../ingestion/cellranger_multi_test/.config.vsh.yaml | 6 +++--- .../ingestion/cellranger_multi_test/main.nf | 6 +++--- .../cellranger_postprocessing_test/.config.vsh.yaml | 6 +++--- .../ingestion/cellranger_postprocessing_test/main.nf | 6 +++--- .../ingestion/conversion_test/.config.vsh.yaml | 6 +++--- .../test_workflows/ingestion/conversion_test/main.nf | 6 +++--- .../dimensionality_reduction_test/.config.vsh.yaml | 6 +++--- .../multiomics/dimensionality_reduction_test/main.nf | 6 +++--- .../process_batches/workflow_test/.config.vsh.yaml | 8 +++++--- .../multiomics/process_batches/workflow_test/main.nf | 12 +++++++++--- .../process_batches/workflow_test2/.config.vsh.yaml | 8 +++++--- .../process_batches/workflow_test2/main.nf | 12 +++++++++--- .../split_modalities_test/.config.vsh.yaml | 6 +++--- .../multiomics/split_modalities_test/main.nf | 6 +++--- .../test_workflows/qc/qc_test/.config.vsh.yaml | 6 +++--- target/nextflow/test_workflows/qc/qc_test/main.nf | 6 +++--- target/nextflow/transfer/publish/.config.vsh.yaml | 6 +++--- target/nextflow/transfer/publish/main.nf | 6 +++--- .../transform/bpcells_regress_out/.config.vsh.yaml | 6 +++--- .../nextflow/transform/bpcells_regress_out/main.nf | 6 +++--- target/nextflow/transform/clr/.config.vsh.yaml | 6 +++--- target/nextflow/transform/clr/main.nf | 6 +++--- .../nextflow/transform/delete_layer/.config.vsh.yaml | 6 +++--- target/nextflow/transform/delete_layer/main.nf | 6 +++--- target/nextflow/transform/log1p/.config.vsh.yaml | 6 +++--- target/nextflow/transform/log1p/main.nf | 6 +++--- .../nextflow/transform/move_layer/.config.vsh.yaml | 6 +++--- target/nextflow/transform/move_layer/main.nf | 6 +++--- .../transform/normalize_total/.config.vsh.yaml | 6 +++--- target/nextflow/transform/normalize_total/main.nf | 6 +++--- .../nextflow/transform/regress_out/.config.vsh.yaml | 6 +++--- target/nextflow/transform/regress_out/main.nf | 6 +++--- target/nextflow/transform/scale/.config.vsh.yaml | 6 +++--- target/nextflow/transform/scale/main.nf | 6 +++--- target/nextflow/transform/tfidf/.config.vsh.yaml | 6 +++--- target/nextflow/transform/tfidf/main.nf | 6 +++--- target/nextflow/velocity/scvelo/.config.vsh.yaml | 6 +++--- target/nextflow/velocity/scvelo/main.nf | 6 +++--- target/nextflow/velocity/velocyto/.config.vsh.yaml | 6 +++--- target/nextflow/velocity/velocyto/main.nf | 6 +++--- .../workflows/gdo/gdo_singlesample/.config.vsh.yaml | 6 +++--- .../nextflow/workflows/gdo/gdo_singlesample/main.nf | 6 +++--- .../workflows/ingestion/bd_rhapsody/.config.vsh.yaml | 6 +++--- .../nextflow/workflows/ingestion/bd_rhapsody/main.nf | 6 +++--- .../ingestion/cellranger_mapping/.config.vsh.yaml | 6 +++--- .../workflows/ingestion/cellranger_mapping/main.nf | 6 +++--- .../ingestion/cellranger_multi/.config.vsh.yaml | 6 +++--- .../workflows/ingestion/cellranger_multi/main.nf | 6 +++--- .../cellranger_postprocessing/.config.vsh.yaml | 6 +++--- .../ingestion/cellranger_postprocessing/main.nf | 6 +++--- .../workflows/ingestion/conversion/.config.vsh.yaml | 6 +++--- .../nextflow/workflows/ingestion/conversion/main.nf | 6 +++--- .../workflows/ingestion/demux/.config.vsh.yaml | 6 +++--- target/nextflow/workflows/ingestion/demux/main.nf | 6 +++--- .../ingestion/make_reference/.config.vsh.yaml | 6 +++--- .../workflows/ingestion/make_reference/main.nf | 6 +++--- .../integration/bbknn_leiden/.config.vsh.yaml | 6 +++--- .../workflows/integration/bbknn_leiden/main.nf | 6 +++--- .../integration/harmony_leiden/.config.vsh.yaml | 6 +++--- .../workflows/integration/harmony_leiden/main.nf | 6 +++--- .../integration/scanorama_leiden/.config.vsh.yaml | 6 +++--- .../workflows/integration/scanorama_leiden/main.nf | 6 +++--- .../integration/scgpt_leiden/.config.vsh.yaml | 6 +++--- .../workflows/integration/scgpt_leiden/main.nf | 6 +++--- .../integration/scvi_leiden/.config.vsh.yaml | 6 +++--- .../workflows/integration/scvi_leiden/main.nf | 6 +++--- .../integration/totalvi_leiden/.config.vsh.yaml | 6 +++--- .../workflows/integration/totalvi_leiden/main.nf | 6 +++--- .../dimensionality_reduction/.config.vsh.yaml | 6 +++--- .../multiomics/dimensionality_reduction/main.nf | 6 +++--- .../multiomics/process_batches/.config.vsh.yaml | 6 +++--- .../workflows/multiomics/process_batches/main.nf | 6 +++--- .../multiomics/process_samples/.config.vsh.yaml | 6 +++--- .../workflows/multiomics/process_samples/main.nf | 6 +++--- .../multiomics/split_modalities/.config.vsh.yaml | 6 +++--- .../workflows/multiomics/split_modalities/main.nf | 6 +++--- .../workflows/prot/prot_multisample/.config.vsh.yaml | 6 +++--- .../nextflow/workflows/prot/prot_multisample/main.nf | 6 +++--- .../prot/prot_singlesample/.config.vsh.yaml | 6 +++--- .../workflows/prot/prot_singlesample/main.nf | 6 +++--- target/nextflow/workflows/qc/qc/.config.vsh.yaml | 6 +++--- target/nextflow/workflows/qc/qc/main.nf | 6 +++--- .../workflows/rna/rna_multisample/.config.vsh.yaml | 6 +++--- .../nextflow/workflows/rna/rna_multisample/main.nf | 6 +++--- .../workflows/rna/rna_singlesample/.config.vsh.yaml | 6 +++--- .../nextflow/workflows/rna/rna_singlesample/main.nf | 6 +++--- 550 files changed, 1544 insertions(+), 1520 deletions(-) diff --git a/src/workflows/test_workflows/multiomics/process_batches/workflow_test/config.vsh.yaml b/src/workflows/test_workflows/multiomics/process_batches/workflow_test/config.vsh.yaml index e96b38d5..4d2299e8 100644 --- a/src/workflows/test_workflows/multiomics/process_batches/workflow_test/config.vsh.yaml +++ b/src/workflows/test_workflows/multiomics/process_batches/workflow_test/config.vsh.yaml @@ -36,4 +36,6 @@ engines: packages: /opt/openpipelinetestutils runners: - type: executable - - type: nextflow \ No newline at end of file + - type: nextflow + directives: + label: ["midmem"] \ No newline at end of file diff --git a/src/workflows/test_workflows/multiomics/process_batches/workflow_test2/config.vsh.yaml b/src/workflows/test_workflows/multiomics/process_batches/workflow_test2/config.vsh.yaml index 8aa0b0cf..702467dd 100644 --- a/src/workflows/test_workflows/multiomics/process_batches/workflow_test2/config.vsh.yaml +++ b/src/workflows/test_workflows/multiomics/process_batches/workflow_test2/config.vsh.yaml @@ -36,4 +36,6 @@ engines: packages: /opt/openpipelinetestutils runners: - type: executable - - type: nextflow \ No newline at end of file + - type: nextflow + directives: + label: ["midmem"] \ No newline at end of file diff --git a/target/executable/annotate/celltypist/.config.vsh.yaml b/target/executable/annotate/celltypist/.config.vsh.yaml index 73482560..9e92cf01 100644 --- a/target/executable/annotate/celltypist/.config.vsh.yaml +++ b/target/executable/annotate/celltypist/.config.vsh.yaml @@ -396,9 +396,9 @@ build_info: output: "target/executable/annotate/celltypist" executable: "target/executable/annotate/celltypist/celltypist" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/annotate/celltypist/celltypist b/target/executable/annotate/celltypist/celltypist index c7b2c579..83397a17 100755 --- a/target/executable/annotate/celltypist/celltypist +++ b/target/executable/annotate/celltypist/celltypist @@ -595,9 +595,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component annotate celltypist" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:54Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/annotate/onclass/.config.vsh.yaml b/target/executable/annotate/onclass/.config.vsh.yaml index 9c7f8adc..3536eb5f 100644 --- a/target/executable/annotate/onclass/.config.vsh.yaml +++ b/target/executable/annotate/onclass/.config.vsh.yaml @@ -336,9 +336,9 @@ build_info: output: "target/executable/annotate/onclass" executable: "target/executable/annotate/onclass/onclass" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/annotate/onclass/onclass b/target/executable/annotate/onclass/onclass index f2985cc7..beb1786c 100755 --- a/target/executable/annotate/onclass/onclass +++ b/target/executable/annotate/onclass/onclass @@ -560,9 +560,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component annotate onclass" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:55Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/annotate/popv/.config.vsh.yaml b/target/executable/annotate/popv/.config.vsh.yaml index 146d4c59..8928df30 100644 --- a/target/executable/annotate/popv/.config.vsh.yaml +++ b/target/executable/annotate/popv/.config.vsh.yaml @@ -356,9 +356,9 @@ build_info: output: "target/executable/annotate/popv" executable: "target/executable/annotate/popv/popv" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/annotate/popv/popv b/target/executable/annotate/popv/popv index cef9ecfc..7622702b 100755 --- a/target/executable/annotate/popv/popv +++ b/target/executable/annotate/popv/popv @@ -559,9 +559,9 @@ RUN cd /opt && git clone --depth 1 https://github.com/YosefLab/PopV.git && \ LABEL org.opencontainers.image.authors="Matthias Beyens, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component annotate popv" -LABEL org.opencontainers.image.created="2024-11-15T11:56:03Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:54Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/annotate/random_forest_annotation/.config.vsh.yaml b/target/executable/annotate/random_forest_annotation/.config.vsh.yaml index 24d6010f..975f210b 100644 --- a/target/executable/annotate/random_forest_annotation/.config.vsh.yaml +++ b/target/executable/annotate/random_forest_annotation/.config.vsh.yaml @@ -357,9 +357,9 @@ build_info: output: "target/executable/annotate/random_forest_annotation" executable: "target/executable/annotate/random_forest_annotation/random_forest_annotation" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/annotate/random_forest_annotation/random_forest_annotation b/target/executable/annotate/random_forest_annotation/random_forest_annotation index 2089252e..7fad5966 100755 --- a/target/executable/annotate/random_forest_annotation/random_forest_annotation +++ b/target/executable/annotate/random_forest_annotation/random_forest_annotation @@ -575,9 +575,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component annotate random_forest_annotation" -LABEL org.opencontainers.image.created="2024-11-15T11:56:05Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:55Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/annotate/scanvi/.config.vsh.yaml b/target/executable/annotate/scanvi/.config.vsh.yaml index 99a93a48..8998b51e 100644 --- a/target/executable/annotate/scanvi/.config.vsh.yaml +++ b/target/executable/annotate/scanvi/.config.vsh.yaml @@ -493,9 +493,9 @@ build_info: output: "target/executable/annotate/scanvi" executable: "target/executable/annotate/scanvi/scanvi" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/annotate/scanvi/scanvi b/target/executable/annotate/scanvi/scanvi index 32591af0..f8b6daf3 100755 --- a/target/executable/annotate/scanvi/scanvi +++ b/target/executable/annotate/scanvi/scanvi @@ -637,9 +637,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component annotate scanvi" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:54Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/annotate/svm_annotation/.config.vsh.yaml b/target/executable/annotate/svm_annotation/.config.vsh.yaml index a1ae5667..e40c94a2 100644 --- a/target/executable/annotate/svm_annotation/.config.vsh.yaml +++ b/target/executable/annotate/svm_annotation/.config.vsh.yaml @@ -339,9 +339,9 @@ build_info: output: "target/executable/annotate/svm_annotation" executable: "target/executable/annotate/svm_annotation/svm_annotation" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/annotate/svm_annotation/svm_annotation b/target/executable/annotate/svm_annotation/svm_annotation index f15e5f5b..154089b5 100755 --- a/target/executable/annotate/svm_annotation/svm_annotation +++ b/target/executable/annotate/svm_annotation/svm_annotation @@ -562,9 +562,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component annotate svm_annotation" -LABEL org.opencontainers.image.created="2024-11-15T11:56:05Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/cluster/leiden/.config.vsh.yaml b/target/executable/cluster/leiden/.config.vsh.yaml index 2ac5ae35..ed72570d 100644 --- a/target/executable/cluster/leiden/.config.vsh.yaml +++ b/target/executable/cluster/leiden/.config.vsh.yaml @@ -250,9 +250,9 @@ build_info: output: "target/executable/cluster/leiden" executable: "target/executable/cluster/leiden/leiden" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/cluster/leiden/leiden b/target/executable/cluster/leiden/leiden index 0079dbed..5e24fd55 100755 --- a/target/executable/cluster/leiden/leiden +++ b/target/executable/cluster/leiden/leiden @@ -516,9 +516,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer" LABEL org.opencontainers.image.description="Companion container for running component cluster leiden" -LABEL org.opencontainers.image.created="2024-11-15T11:56:07Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:57Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/compression/compress_h5mu/.config.vsh.yaml b/target/executable/compression/compress_h5mu/.config.vsh.yaml index 2da4d6a1..d91905cf 100644 --- a/target/executable/compression/compress_h5mu/.config.vsh.yaml +++ b/target/executable/compression/compress_h5mu/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/executable/compression/compress_h5mu" executable: "target/executable/compression/compress_h5mu/compress_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/compression/compress_h5mu/compress_h5mu b/target/executable/compression/compress_h5mu/compress_h5mu index 34473f6b..6d462e22 100755 --- a/target/executable/compression/compress_h5mu/compress_h5mu +++ b/target/executable/compression/compress_h5mu/compress_h5mu @@ -479,9 +479,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component compression compress_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:51Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/compression/tar_extract/.config.vsh.yaml b/target/executable/compression/tar_extract/.config.vsh.yaml index d0a69aff..af40eadb 100644 --- a/target/executable/compression/tar_extract/.config.vsh.yaml +++ b/target/executable/compression/tar_extract/.config.vsh.yaml @@ -169,9 +169,9 @@ build_info: output: "target/executable/compression/tar_extract" executable: "target/executable/compression/tar_extract/tar_extract" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/compression/tar_extract/tar_extract b/target/executable/compression/tar_extract/tar_extract index 9f82aae3..46f127e5 100755 --- a/target/executable/compression/tar_extract/tar_extract +++ b/target/executable/compression/tar_extract/tar_extract @@ -476,9 +476,9 @@ function ViashDockerfile { FROM ubuntu:latest ENTRYPOINT [] LABEL org.opencontainers.image.description="Companion container for running component compression tar_extract" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:51Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_10xh5_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_10xh5_to_h5mu/.config.vsh.yaml index 98ad5b77..ca4ae27c 100644 --- a/target/executable/convert/from_10xh5_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_10xh5_to_h5mu/.config.vsh.yaml @@ -301,9 +301,9 @@ build_info: output: "target/executable/convert/from_10xh5_to_h5mu" executable: "target/executable/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu b/target/executable/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu index def04538..b250f678 100755 --- a/target/executable/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu +++ b/target/executable/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu @@ -501,9 +501,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component convert from_10xh5_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:55:59Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_10xmtx_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_10xmtx_to_h5mu/.config.vsh.yaml index 4c38020b..47ba6522 100644 --- a/target/executable/convert/from_10xmtx_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_10xmtx_to_h5mu/.config.vsh.yaml @@ -202,9 +202,9 @@ build_info: output: "target/executable/convert/from_10xmtx_to_h5mu" executable: "target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu b/target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu index 8b559cf5..d9d9d0ed 100755 --- a/target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu +++ b/target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu @@ -479,9 +479,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component convert from_10xmtx_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:51Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml b/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml index 0b15f507..72605b84 100644 --- a/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml +++ b/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml @@ -178,9 +178,9 @@ build_info: output: "target/executable/convert/from_bd_to_10x_molecular_barcode_tags" executable: "target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags b/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags index 922b5681..05420943 100755 --- a/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags +++ b/target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags @@ -480,9 +480,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component convert from_bd_to_10x_molecular_barcode_tags" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_bdrhap_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_bdrhap_to_h5mu/.config.vsh.yaml index cabaf500..a95ce337 100644 --- a/target/executable/convert/from_bdrhap_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_bdrhap_to_h5mu/.config.vsh.yaml @@ -211,9 +211,9 @@ build_info: output: "target/executable/convert/from_bdrhap_to_h5mu" executable: "target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu b/target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu index 72b00f16..eb98f8f8 100755 --- a/target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu +++ b/target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu @@ -486,9 +486,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component convert from_bdrhap_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml index fbd6c156..8d684dd5 100644 --- a/target/executable/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/executable/convert/from_cellranger_multi_to_h5mu" executable: "target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu b/target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu index dff037c4..549df9ed 100755 --- a/target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu +++ b/target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu @@ -503,9 +503,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component convert from_cellranger_multi_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:55:58Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:49Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_h5ad_to_h5mu/.config.vsh.yaml b/target/executable/convert/from_h5ad_to_h5mu/.config.vsh.yaml index 33f6f11a..ce4ef79b 100644 --- a/target/executable/convert/from_h5ad_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/from_h5ad_to_h5mu/.config.vsh.yaml @@ -206,9 +206,9 @@ build_info: output: "target/executable/convert/from_h5ad_to_h5mu" executable: "target/executable/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu b/target/executable/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu index 1e6abe7c..6557b7ab 100755 --- a/target/executable/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu +++ b/target/executable/convert/from_h5ad_to_h5mu/from_h5ad_to_h5mu @@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer" LABEL org.opencontainers.image.description="Companion container for running component convert from_h5ad_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:55:58Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:48Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_h5mu_to_h5ad/.config.vsh.yaml b/target/executable/convert/from_h5mu_to_h5ad/.config.vsh.yaml index abb22714..757e2f33 100644 --- a/target/executable/convert/from_h5mu_to_h5ad/.config.vsh.yaml +++ b/target/executable/convert/from_h5mu_to_h5ad/.config.vsh.yaml @@ -211,9 +211,9 @@ build_info: output: "target/executable/convert/from_h5mu_to_h5ad" executable: "target/executable/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad b/target/executable/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad index 0627468e..2d950424 100755 --- a/target/executable/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad +++ b/target/executable/convert/from_h5mu_to_h5ad/from_h5mu_to_h5ad @@ -484,9 +484,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_h5ad" -LABEL org.opencontainers.image.created="2024-11-15T11:55:59Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:49Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/from_h5mu_to_seurat/.config.vsh.yaml b/target/executable/convert/from_h5mu_to_seurat/.config.vsh.yaml index 7ba6248f..642170f9 100644 --- a/target/executable/convert/from_h5mu_to_seurat/.config.vsh.yaml +++ b/target/executable/convert/from_h5mu_to_seurat/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/executable/convert/from_h5mu_to_seurat" executable: "target/executable/convert/from_h5mu_to_seurat/from_h5mu_to_seurat" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/from_h5mu_to_seurat/from_h5mu_to_seurat b/target/executable/convert/from_h5mu_to_seurat/from_h5mu_to_seurat index d1918133..8b893157 100755 --- a/target/executable/convert/from_h5mu_to_seurat/from_h5mu_to_seurat +++ b/target/executable/convert/from_h5mu_to_seurat/from_h5mu_to_seurat @@ -488,9 +488,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component convert from_h5mu_to_seurat" -LABEL org.opencontainers.image.created="2024-11-15T11:55:59Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/convert/velocyto_to_h5mu/.config.vsh.yaml b/target/executable/convert/velocyto_to_h5mu/.config.vsh.yaml index 1461ef56..8a22fb4c 100644 --- a/target/executable/convert/velocyto_to_h5mu/.config.vsh.yaml +++ b/target/executable/convert/velocyto_to_h5mu/.config.vsh.yaml @@ -270,9 +270,9 @@ build_info: output: "target/executable/convert/velocyto_to_h5mu" executable: "target/executable/convert/velocyto_to_h5mu/velocyto_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/convert/velocyto_to_h5mu/velocyto_to_h5mu b/target/executable/convert/velocyto_to_h5mu/velocyto_to_h5mu index 1b1dc107..c07c0c98 100755 --- a/target/executable/convert/velocyto_to_h5mu/velocyto_to_h5mu +++ b/target/executable/convert/velocyto_to_h5mu/velocyto_to_h5mu @@ -511,9 +511,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt, Angela Oliveira Pisco" LABEL org.opencontainers.image.description="Companion container for running component convert velocyto_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:06Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/correction/cellbender_remove_background/.config.vsh.yaml b/target/executable/correction/cellbender_remove_background/.config.vsh.yaml index fef6a9a3..d93a9a81 100644 --- a/target/executable/correction/cellbender_remove_background/.config.vsh.yaml +++ b/target/executable/correction/cellbender_remove_background/.config.vsh.yaml @@ -606,9 +606,9 @@ build_info: output: "target/executable/correction/cellbender_remove_background" executable: "target/executable/correction/cellbender_remove_background/cellbender_remove_background" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/correction/cellbender_remove_background/cellbender_remove_background b/target/executable/correction/cellbender_remove_background/cellbender_remove_background index e0117162..0df4bbc8 100755 --- a/target/executable/correction/cellbender_remove_background/cellbender_remove_background +++ b/target/executable/correction/cellbender_remove_background/cellbender_remove_background @@ -742,9 +742,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "lxml~=4.8.0" "mudata~=0.2.1" "cellbender~=0.3.0" LABEL org.opencontainers.image.description="Companion container for running component correction cellbender_remove_background" -LABEL org.opencontainers.image.created="2024-11-15T11:55:54Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:45Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/correction/cellbender_remove_background_v0_2/.config.vsh.yaml b/target/executable/correction/cellbender_remove_background_v0_2/.config.vsh.yaml index e75653ad..f8de3fc9 100644 --- a/target/executable/correction/cellbender_remove_background_v0_2/.config.vsh.yaml +++ b/target/executable/correction/cellbender_remove_background_v0_2/.config.vsh.yaml @@ -402,9 +402,9 @@ build_info: output: "target/executable/correction/cellbender_remove_background_v0_2" executable: "target/executable/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2 b/target/executable/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2 index a2219b2d..a1632d04 100755 --- a/target/executable/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2 +++ b/target/executable/correction/cellbender_remove_background_v0_2/cellbender_remove_background_v0_2 @@ -608,9 +608,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "anndata==0.10.8" "mudata~=0.2.4" "pandas!=2.1.2" "numpy<2.0.0" "muon==0.1.5" "cellbender==0.2.1" LABEL org.opencontainers.image.description="Companion container for running component correction cellbender_remove_background_v0_2" -LABEL org.opencontainers.image.created="2024-11-15T11:55:54Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:44Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dataflow/concatenate_h5mu/.config.vsh.yaml b/target/executable/dataflow/concatenate_h5mu/.config.vsh.yaml index d75ba411..8072cfd0 100644 --- a/target/executable/dataflow/concatenate_h5mu/.config.vsh.yaml +++ b/target/executable/dataflow/concatenate_h5mu/.config.vsh.yaml @@ -275,9 +275,9 @@ build_info: output: "target/executable/dataflow/concatenate_h5mu" executable: "target/executable/dataflow/concatenate_h5mu/concatenate_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dataflow/concatenate_h5mu/concatenate_h5mu b/target/executable/dataflow/concatenate_h5mu/concatenate_h5mu index b359bf62..a4a1bf25 100755 --- a/target/executable/dataflow/concatenate_h5mu/concatenate_h5mu +++ b/target/executable/dataflow/concatenate_h5mu/concatenate_h5mu @@ -525,9 +525,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component dataflow concatenate_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:55:56Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dataflow/merge/.config.vsh.yaml b/target/executable/dataflow/merge/.config.vsh.yaml index 1cd13cd5..f0783f07 100644 --- a/target/executable/dataflow/merge/.config.vsh.yaml +++ b/target/executable/dataflow/merge/.config.vsh.yaml @@ -203,9 +203,9 @@ build_info: output: "target/executable/dataflow/merge" executable: "target/executable/dataflow/merge/merge" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dataflow/merge/merge b/target/executable/dataflow/merge/merge index b134ae13..1ae5eecb 100755 --- a/target/executable/dataflow/merge/merge +++ b/target/executable/dataflow/merge/merge @@ -480,9 +480,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component dataflow merge" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:46Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dataflow/split_h5mu/.config.vsh.yaml b/target/executable/dataflow/split_h5mu/.config.vsh.yaml index dd7fe347..a994b3ed 100644 --- a/target/executable/dataflow/split_h5mu/.config.vsh.yaml +++ b/target/executable/dataflow/split_h5mu/.config.vsh.yaml @@ -237,9 +237,9 @@ build_info: output: "target/executable/dataflow/split_h5mu" executable: "target/executable/dataflow/split_h5mu/split_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dataflow/split_h5mu/split_h5mu b/target/executable/dataflow/split_h5mu/split_h5mu index 88a8d9ae..91742798 100755 --- a/target/executable/dataflow/split_h5mu/split_h5mu +++ b/target/executable/dataflow/split_h5mu/split_h5mu @@ -506,9 +506,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component dataflow split_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:55:56Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dataflow/split_h5mu_train_test/.config.vsh.yaml b/target/executable/dataflow/split_h5mu_train_test/.config.vsh.yaml index 33477e53..da41abff 100644 --- a/target/executable/dataflow/split_h5mu_train_test/.config.vsh.yaml +++ b/target/executable/dataflow/split_h5mu_train_test/.config.vsh.yaml @@ -278,9 +278,9 @@ build_info: output: "target/executable/dataflow/split_h5mu_train_test" executable: "target/executable/dataflow/split_h5mu_train_test/split_h5mu_train_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dataflow/split_h5mu_train_test/split_h5mu_train_test b/target/executable/dataflow/split_h5mu_train_test/split_h5mu_train_test index c9bd85ba..327a373d 100755 --- a/target/executable/dataflow/split_h5mu_train_test/split_h5mu_train_test +++ b/target/executable/dataflow/split_h5mu_train_test/split_h5mu_train_test @@ -530,9 +530,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component dataflow split_h5mu_train_test" -LABEL org.opencontainers.image.created="2024-11-15T11:55:56Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:46Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dataflow/split_modalities/.config.vsh.yaml b/target/executable/dataflow/split_modalities/.config.vsh.yaml index b10224ac..7382eb16 100644 --- a/target/executable/dataflow/split_modalities/.config.vsh.yaml +++ b/target/executable/dataflow/split_modalities/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/executable/dataflow/split_modalities" executable: "target/executable/dataflow/split_modalities/split_modalities" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dataflow/split_modalities/split_modalities b/target/executable/dataflow/split_modalities/split_modalities index 6a4fc735..408072fc 100755 --- a/target/executable/dataflow/split_modalities/split_modalities +++ b/target/executable/dataflow/split_modalities/split_modalities @@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component dataflow split_modalities" -LABEL org.opencontainers.image.created="2024-11-15T11:55:57Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/demux/bcl2fastq/.config.vsh.yaml b/target/executable/demux/bcl2fastq/.config.vsh.yaml index ad5c5d21..bf7d2642 100644 --- a/target/executable/demux/bcl2fastq/.config.vsh.yaml +++ b/target/executable/demux/bcl2fastq/.config.vsh.yaml @@ -192,9 +192,9 @@ build_info: output: "target/executable/demux/bcl2fastq" executable: "target/executable/demux/bcl2fastq/bcl2fastq" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/demux/bcl2fastq/bcl2fastq b/target/executable/demux/bcl2fastq/bcl2fastq index 8cdbb351..6af46ec0 100755 --- a/target/executable/demux/bcl2fastq/bcl2fastq +++ b/target/executable/demux/bcl2fastq/bcl2fastq @@ -484,9 +484,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component demux bcl2fastq" -LABEL org.opencontainers.image.created="2024-11-15T11:56:14Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/demux/bcl_convert/.config.vsh.yaml b/target/executable/demux/bcl_convert/.config.vsh.yaml index f4ff8278..8b736cf7 100644 --- a/target/executable/demux/bcl_convert/.config.vsh.yaml +++ b/target/executable/demux/bcl_convert/.config.vsh.yaml @@ -267,9 +267,9 @@ build_info: output: "target/executable/demux/bcl_convert" executable: "target/executable/demux/bcl_convert/bcl_convert" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/demux/bcl_convert/bcl_convert b/target/executable/demux/bcl_convert/bcl_convert index 771d2ea5..4f17f014 100755 --- a/target/executable/demux/bcl_convert/bcl_convert +++ b/target/executable/demux/bcl_convert/bcl_convert @@ -510,9 +510,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Toni Verbeiren, Marijke Van Moerbeke, Weiwei Schultz, Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component demux bcl_convert" -LABEL org.opencontainers.image.created="2024-11-15T11:56:15Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/demux/cellranger_atac_mkfastq/.config.vsh.yaml b/target/executable/demux/cellranger_atac_mkfastq/.config.vsh.yaml index 8f25a88f..f597b96f 100644 --- a/target/executable/demux/cellranger_atac_mkfastq/.config.vsh.yaml +++ b/target/executable/demux/cellranger_atac_mkfastq/.config.vsh.yaml @@ -236,9 +236,9 @@ build_info: output: "target/executable/demux/cellranger_atac_mkfastq" executable: "target/executable/demux/cellranger_atac_mkfastq/cellranger_atac_mkfastq" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/demux/cellranger_atac_mkfastq/cellranger_atac_mkfastq b/target/executable/demux/cellranger_atac_mkfastq/cellranger_atac_mkfastq index 0d4215e4..c62812d8 100755 --- a/target/executable/demux/cellranger_atac_mkfastq/cellranger_atac_mkfastq +++ b/target/executable/demux/cellranger_atac_mkfastq/cellranger_atac_mkfastq @@ -513,9 +513,9 @@ RUN DEBIAN_FRONTEND=noninteractive apt update \ LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component demux cellranger_atac_mkfastq" -LABEL org.opencontainers.image.created="2024-11-15T11:56:15Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/demux/cellranger_mkfastq/.config.vsh.yaml b/target/executable/demux/cellranger_mkfastq/.config.vsh.yaml index 4587e310..72d9bf56 100644 --- a/target/executable/demux/cellranger_mkfastq/.config.vsh.yaml +++ b/target/executable/demux/cellranger_mkfastq/.config.vsh.yaml @@ -227,9 +227,9 @@ build_info: output: "target/executable/demux/cellranger_mkfastq" executable: "target/executable/demux/cellranger_mkfastq/cellranger_mkfastq" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/demux/cellranger_mkfastq/cellranger_mkfastq b/target/executable/demux/cellranger_mkfastq/cellranger_mkfastq index bd512b58..c4c5e2dd 100755 --- a/target/executable/demux/cellranger_mkfastq/cellranger_mkfastq +++ b/target/executable/demux/cellranger_mkfastq/cellranger_mkfastq @@ -489,9 +489,9 @@ apt upgrade -y && apt install -y procps && rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Samuel D'Souza, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component demux cellranger_mkfastq" -LABEL org.opencontainers.image.created="2024-11-15T11:56:15Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dimred/densmap/.config.vsh.yaml b/target/executable/dimred/densmap/.config.vsh.yaml index 06879f95..5d504598 100644 --- a/target/executable/dimred/densmap/.config.vsh.yaml +++ b/target/executable/dimred/densmap/.config.vsh.yaml @@ -404,9 +404,9 @@ build_info: output: "target/executable/dimred/densmap" executable: "target/executable/dimred/densmap/densmap" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dimred/densmap/densmap b/target/executable/dimred/densmap/densmap index 09380d34..bc18f5b0 100755 --- a/target/executable/dimred/densmap/densmap +++ b/target/executable/dimred/densmap/densmap @@ -614,9 +614,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component dimred densmap" -LABEL org.opencontainers.image.created="2024-11-15T11:55:58Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:49Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dimred/lsi/.config.vsh.yaml b/target/executable/dimred/lsi/.config.vsh.yaml index a0890cbb..bdaa61e4 100644 --- a/target/executable/dimred/lsi/.config.vsh.yaml +++ b/target/executable/dimred/lsi/.config.vsh.yaml @@ -308,9 +308,9 @@ build_info: output: "target/executable/dimred/lsi" executable: "target/executable/dimred/lsi/lsi" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dimred/lsi/lsi b/target/executable/dimred/lsi/lsi index 2843221c..36fffff5 100755 --- a/target/executable/dimred/lsi/lsi +++ b/target/executable/dimred/lsi/lsi @@ -529,9 +529,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Sarah Ouologuem, Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component dimred lsi" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dimred/pca/.config.vsh.yaml b/target/executable/dimred/pca/.config.vsh.yaml index 2a72e723..a1294b86 100644 --- a/target/executable/dimred/pca/.config.vsh.yaml +++ b/target/executable/dimred/pca/.config.vsh.yaml @@ -267,9 +267,9 @@ build_info: output: "target/executable/dimred/pca" executable: "target/executable/dimred/pca/pca" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dimred/pca/pca b/target/executable/dimred/pca/pca index aa617c86..2a6444ab 100755 --- a/target/executable/dimred/pca/pca +++ b/target/executable/dimred/pca/pca @@ -521,9 +521,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer" LABEL org.opencontainers.image.description="Companion container for running component dimred pca" -LABEL org.opencontainers.image.created="2024-11-15T11:55:59Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dimred/tsne/.config.vsh.yaml b/target/executable/dimred/tsne/.config.vsh.yaml index 5827c207..ee943c23 100644 --- a/target/executable/dimred/tsne/.config.vsh.yaml +++ b/target/executable/dimred/tsne/.config.vsh.yaml @@ -316,9 +316,9 @@ build_info: output: "target/executable/dimred/tsne" executable: "target/executable/dimred/tsne/tsne" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dimred/tsne/tsne b/target/executable/dimred/tsne/tsne index 54a14caf..f0545ebf 100755 --- a/target/executable/dimred/tsne/tsne +++ b/target/executable/dimred/tsne/tsne @@ -547,9 +547,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component dimred tsne" -LABEL org.opencontainers.image.created="2024-11-15T11:55:59Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:49Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/dimred/umap/.config.vsh.yaml b/target/executable/dimred/umap/.config.vsh.yaml index e329b857..3db2930d 100644 --- a/target/executable/dimred/umap/.config.vsh.yaml +++ b/target/executable/dimred/umap/.config.vsh.yaml @@ -321,9 +321,9 @@ build_info: output: "target/executable/dimred/umap" executable: "target/executable/dimred/umap/umap" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/dimred/umap/umap b/target/executable/dimred/umap/umap index 2c1fcc46..e61cee7a 100755 --- a/target/executable/dimred/umap/umap +++ b/target/executable/dimred/umap/umap @@ -558,9 +558,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer" LABEL org.opencontainers.image.description="Companion container for running component dimred umap" -LABEL org.opencontainers.image.created="2024-11-15T11:55:59Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:50Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/download/download_file/.config.vsh.yaml b/target/executable/download/download_file/.config.vsh.yaml index fa88d418..b2e8dc50 100644 --- a/target/executable/download/download_file/.config.vsh.yaml +++ b/target/executable/download/download_file/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/executable/download/download_file" executable: "target/executable/download/download_file/download_file" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/download/download_file/download_file b/target/executable/download/download_file/download_file index 2b93b96c..463dd3e6 100755 --- a/target/executable/download/download_file/download_file +++ b/target/executable/download/download_file/download_file @@ -479,9 +479,9 @@ FROM bash:5.1.16 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component download download_file" -LABEL org.opencontainers.image.created="2024-11-15T11:56:07Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:57Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/download/sync_test_resources/.config.vsh.yaml b/target/executable/download/sync_test_resources/.config.vsh.yaml index fa2e52b5..2861649d 100644 --- a/target/executable/download/sync_test_resources/.config.vsh.yaml +++ b/target/executable/download/sync_test_resources/.config.vsh.yaml @@ -194,9 +194,9 @@ build_info: output: "target/executable/download/sync_test_resources" executable: "target/executable/download/sync_test_resources/sync_test_resources" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/download/sync_test_resources/sync_test_resources b/target/executable/download/sync_test_resources/sync_test_resources index a37fd7d4..7f36666c 100755 --- a/target/executable/download/sync_test_resources/sync_test_resources +++ b/target/executable/download/sync_test_resources/sync_test_resources @@ -499,9 +499,9 @@ RUN wget https://github.com/mikefarah/yq/releases/latest/download/yq_linux_amd64 LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component download sync_test_resources" -LABEL org.opencontainers.image.created="2024-11-15T11:56:06Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:57Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml b/target/executable/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml index 5d37ba40..5c9f8269 100644 --- a/target/executable/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml +++ b/target/executable/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml @@ -356,9 +356,9 @@ build_info: output: "target/executable/feature_annotation/highly_variable_features_scanpy" executable: "target/executable/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy b/target/executable/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy index a98cb25e..00c6b47b 100755 --- a/target/executable/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy +++ b/target/executable/feature_annotation/highly_variable_features_scanpy/highly_variable_features_scanpy @@ -580,9 +580,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component feature_annotation highly_variable_features_scanpy" -LABEL org.opencontainers.image.created="2024-11-15T11:55:54Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:44Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml b/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml index 709b3c17..179106b9 100644 --- a/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml +++ b/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml @@ -393,9 +393,9 @@ build_info: output: "target/executable/feature_annotation/score_genes_cell_cycle_scanpy" executable: "target/executable/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy b/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy index 1bef36e0..d0bca151 100755 --- a/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy +++ b/target/executable/feature_annotation/score_genes_cell_cycle_scanpy/score_genes_cell_cycle_scanpy @@ -580,9 +580,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component feature_annotation score_genes_cell_cycle_scanpy" -LABEL org.opencontainers.image.created="2024-11-15T11:55:54Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:45Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/feature_annotation/score_genes_scanpy/.config.vsh.yaml b/target/executable/feature_annotation/score_genes_scanpy/.config.vsh.yaml index 1b988899..9f043c0f 100644 --- a/target/executable/feature_annotation/score_genes_scanpy/.config.vsh.yaml +++ b/target/executable/feature_annotation/score_genes_scanpy/.config.vsh.yaml @@ -282,9 +282,9 @@ build_info: output: "target/executable/feature_annotation/score_genes_scanpy" executable: "target/executable/feature_annotation/score_genes_scanpy/score_genes_scanpy" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/feature_annotation/score_genes_scanpy/score_genes_scanpy b/target/executable/feature_annotation/score_genes_scanpy/score_genes_scanpy index a882c111..cddc25de 100755 --- a/target/executable/feature_annotation/score_genes_scanpy/score_genes_scanpy +++ b/target/executable/feature_annotation/score_genes_scanpy/score_genes_scanpy @@ -551,9 +551,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Dorien Roosen, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component feature_annotation score_genes_scanpy" -LABEL org.opencontainers.image.created="2024-11-15T11:55:53Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:44Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/files/make_params/.config.vsh.yaml b/target/executable/files/make_params/.config.vsh.yaml index 02abb888..83eb891a 100644 --- a/target/executable/files/make_params/.config.vsh.yaml +++ b/target/executable/files/make_params/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/executable/files/make_params" executable: "target/executable/files/make_params/make_params" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/files/make_params/make_params b/target/executable/files/make_params/make_params index 8e1eb474..56bb61ae 100755 --- a/target/executable/files/make_params/make_params +++ b/target/executable/files/make_params/make_params @@ -499,9 +499,9 @@ FROM ghcr.io/data-intuitive/randpy:r4.0 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component files make_params" -LABEL org.opencontainers.image.created="2024-11-15T11:56:03Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/delimit_fraction/.config.vsh.yaml b/target/executable/filter/delimit_fraction/.config.vsh.yaml index a2b0d0d9..ed966721 100644 --- a/target/executable/filter/delimit_fraction/.config.vsh.yaml +++ b/target/executable/filter/delimit_fraction/.config.vsh.yaml @@ -263,9 +263,9 @@ build_info: output: "target/executable/filter/delimit_fraction" executable: "target/executable/filter/delimit_fraction/delimit_fraction" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/delimit_fraction/delimit_fraction b/target/executable/filter/delimit_fraction/delimit_fraction index fc2b57c1..d3e30305 100755 --- a/target/executable/filter/delimit_fraction/delimit_fraction +++ b/target/executable/filter/delimit_fraction/delimit_fraction @@ -516,9 +516,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component filter delimit_fraction" -LABEL org.opencontainers.image.created="2024-11-15T11:56:03Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/do_filter/.config.vsh.yaml b/target/executable/filter/do_filter/.config.vsh.yaml index bf89f96c..02693c42 100644 --- a/target/executable/filter/do_filter/.config.vsh.yaml +++ b/target/executable/filter/do_filter/.config.vsh.yaml @@ -220,9 +220,9 @@ build_info: output: "target/executable/filter/do_filter" executable: "target/executable/filter/do_filter/do_filter" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/do_filter/do_filter b/target/executable/filter/do_filter/do_filter index 56ad856d..9d8cd8c0 100755 --- a/target/executable/filter/do_filter/do_filter +++ b/target/executable/filter/do_filter/do_filter @@ -494,9 +494,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component filter do_filter" -LABEL org.opencontainers.image.created="2024-11-15T11:56:02Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:52Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/filter_with_counts/.config.vsh.yaml b/target/executable/filter/filter_with_counts/.config.vsh.yaml index a6c58fce..adc6deb9 100644 --- a/target/executable/filter/filter_with_counts/.config.vsh.yaml +++ b/target/executable/filter/filter_with_counts/.config.vsh.yaml @@ -305,9 +305,9 @@ build_info: output: "target/executable/filter/filter_with_counts" executable: "target/executable/filter/filter_with_counts/filter_with_counts" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/filter_with_counts/filter_with_counts b/target/executable/filter/filter_with_counts/filter_with_counts index 57e39aeb..cf9f2153 100755 --- a/target/executable/filter/filter_with_counts/filter_with_counts +++ b/target/executable/filter/filter_with_counts/filter_with_counts @@ -534,9 +534,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component filter filter_with_counts" -LABEL org.opencontainers.image.created="2024-11-15T11:56:02Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/filter_with_scrublet/.config.vsh.yaml b/target/executable/filter/filter_with_scrublet/.config.vsh.yaml index b4bc9f59..05ec97cd 100644 --- a/target/executable/filter/filter_with_scrublet/.config.vsh.yaml +++ b/target/executable/filter/filter_with_scrublet/.config.vsh.yaml @@ -325,9 +325,9 @@ build_info: output: "target/executable/filter/filter_with_scrublet" executable: "target/executable/filter/filter_with_scrublet/filter_with_scrublet" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/filter_with_scrublet/filter_with_scrublet b/target/executable/filter/filter_with_scrublet/filter_with_scrublet index 99679bbc..94958719 100755 --- a/target/executable/filter/filter_with_scrublet/filter_with_scrublet +++ b/target/executable/filter/filter_with_scrublet/filter_with_scrublet @@ -560,9 +560,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component filter filter_with_scrublet" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:51Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/intersect_obs/.config.vsh.yaml b/target/executable/filter/intersect_obs/.config.vsh.yaml index bdd1fefa..dd0f7f5e 100644 --- a/target/executable/filter/intersect_obs/.config.vsh.yaml +++ b/target/executable/filter/intersect_obs/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/executable/filter/intersect_obs" executable: "target/executable/filter/intersect_obs/intersect_obs" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/intersect_obs/intersect_obs b/target/executable/filter/intersect_obs/intersect_obs index 890dc620..173e26a2 100755 --- a/target/executable/filter/intersect_obs/intersect_obs +++ b/target/executable/filter/intersect_obs/intersect_obs @@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Isabelle Bergiers" LABEL org.opencontainers.image.description="Companion container for running component filter intersect_obs" -LABEL org.opencontainers.image.created="2024-11-15T11:56:02Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/remove_modality/.config.vsh.yaml b/target/executable/filter/remove_modality/.config.vsh.yaml index 99da265a..624c1181 100644 --- a/target/executable/filter/remove_modality/.config.vsh.yaml +++ b/target/executable/filter/remove_modality/.config.vsh.yaml @@ -192,9 +192,9 @@ build_info: output: "target/executable/filter/remove_modality" executable: "target/executable/filter/remove_modality/remove_modality" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/remove_modality/remove_modality b/target/executable/filter/remove_modality/remove_modality index 7121e26e..2a8d1fa7 100755 --- a/target/executable/filter/remove_modality/remove_modality +++ b/target/executable/filter/remove_modality/remove_modality @@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component filter remove_modality" -LABEL org.opencontainers.image.created="2024-11-15T11:56:01Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:52Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/subset_h5mu/.config.vsh.yaml b/target/executable/filter/subset_h5mu/.config.vsh.yaml index a04b2b1f..987ff95b 100644 --- a/target/executable/filter/subset_h5mu/.config.vsh.yaml +++ b/target/executable/filter/subset_h5mu/.config.vsh.yaml @@ -206,9 +206,9 @@ build_info: output: "target/executable/filter/subset_h5mu" executable: "target/executable/filter/subset_h5mu/subset_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/subset_h5mu/subset_h5mu b/target/executable/filter/subset_h5mu/subset_h5mu index de4661a7..3241622f 100755 --- a/target/executable/filter/subset_h5mu/subset_h5mu +++ b/target/executable/filter/subset_h5mu/subset_h5mu @@ -489,9 +489,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component filter subset_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:01Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:51Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/filter/subset_obsp/.config.vsh.yaml b/target/executable/filter/subset_obsp/.config.vsh.yaml index d5a4aff1..62c1d452 100644 --- a/target/executable/filter/subset_obsp/.config.vsh.yaml +++ b/target/executable/filter/subset_obsp/.config.vsh.yaml @@ -240,9 +240,9 @@ build_info: output: "target/executable/filter/subset_obsp" executable: "target/executable/filter/subset_obsp/subset_obsp" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/filter/subset_obsp/subset_obsp b/target/executable/filter/subset_obsp/subset_obsp index 91f31eae..52f05bda 100755 --- a/target/executable/filter/subset_obsp/subset_obsp +++ b/target/executable/filter/subset_obsp/subset_obsp @@ -503,9 +503,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component filter subset_obsp" -LABEL org.opencontainers.image.created="2024-11-15T11:56:01Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:52Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/bcftools/.config.vsh.yaml b/target/executable/genetic_demux/bcftools/.config.vsh.yaml index 7bee93d6..12e6dc38 100644 --- a/target/executable/genetic_demux/bcftools/.config.vsh.yaml +++ b/target/executable/genetic_demux/bcftools/.config.vsh.yaml @@ -194,9 +194,9 @@ build_info: output: "target/executable/genetic_demux/bcftools" executable: "target/executable/genetic_demux/bcftools/bcftools" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/bcftools/bcftools b/target/executable/genetic_demux/bcftools/bcftools index 5cf9504e..4deee432 100755 --- a/target/executable/genetic_demux/bcftools/bcftools +++ b/target/executable/genetic_demux/bcftools/bcftools @@ -485,9 +485,9 @@ RUN apt-get update && \ RUN wget https://github.com/samtools/bcftools/releases/download/1.16/bcftools-1.16.tar.bz2 -O bcftools.tar.bz2 && tar -xjvf bcftools.tar.bz2 && cd bcftools-1.16 && make prefix=/usr/local install LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux bcftools" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:54Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/cellsnp/.config.vsh.yaml b/target/executable/genetic_demux/cellsnp/.config.vsh.yaml index 19cefdf1..178fd37c 100644 --- a/target/executable/genetic_demux/cellsnp/.config.vsh.yaml +++ b/target/executable/genetic_demux/cellsnp/.config.vsh.yaml @@ -368,9 +368,9 @@ build_info: output: "target/executable/genetic_demux/cellsnp" executable: "target/executable/genetic_demux/cellsnp/cellsnp" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/cellsnp/cellsnp b/target/executable/genetic_demux/cellsnp/cellsnp index 62e653b2..0a5bffeb 100755 --- a/target/executable/genetic_demux/cellsnp/cellsnp +++ b/target/executable/genetic_demux/cellsnp/cellsnp @@ -571,9 +571,9 @@ RUN wget https://github.com/samtools/htslib/releases/download/1.16/htslib-1.16.t RUN git clone https://github.com/single-cell-genetics/cellsnp-lite.git && cd cellsnp-lite && autoreconf -iv && ./configure --with-htslib=/htslib-1.16 && make && make install LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux cellsnp" -LABEL org.opencontainers.image.created="2024-11-15T11:56:01Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:52Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/demuxlet/.config.vsh.yaml b/target/executable/genetic_demux/demuxlet/.config.vsh.yaml index b1c0ebc9..38d1cde8 100644 --- a/target/executable/genetic_demux/demuxlet/.config.vsh.yaml +++ b/target/executable/genetic_demux/demuxlet/.config.vsh.yaml @@ -447,9 +447,9 @@ build_info: output: "target/executable/genetic_demux/demuxlet" executable: "target/executable/genetic_demux/demuxlet/demuxlet" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/demuxlet/demuxlet b/target/executable/genetic_demux/demuxlet/demuxlet index 2b9c7fab..f900d951 100755 --- a/target/executable/genetic_demux/demuxlet/demuxlet +++ b/target/executable/genetic_demux/demuxlet/demuxlet @@ -616,9 +616,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux demuxlet" -LABEL org.opencontainers.image.created="2024-11-15T11:56:02Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/dsc_pileup/.config.vsh.yaml b/target/executable/genetic_demux/dsc_pileup/.config.vsh.yaml index 08341a9d..0a95c2cc 100644 --- a/target/executable/genetic_demux/dsc_pileup/.config.vsh.yaml +++ b/target/executable/genetic_demux/dsc_pileup/.config.vsh.yaml @@ -366,9 +366,9 @@ build_info: output: "target/executable/genetic_demux/dsc_pileup" executable: "target/executable/genetic_demux/dsc_pileup/dsc_pileup" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/dsc_pileup/dsc_pileup b/target/executable/genetic_demux/dsc_pileup/dsc_pileup index bb6a85f7..e2484690 100755 --- a/target/executable/genetic_demux/dsc_pileup/dsc_pileup +++ b/target/executable/genetic_demux/dsc_pileup/dsc_pileup @@ -571,9 +571,9 @@ RUN git clone https://github.com/samtools/htslib.git /tmp/htslib && cd /tmp/htsl RUN git clone --depth 1 https://github.com/statgen/popscle.git /tmp/popscle && mkdir -p /tmp/popscle/build && cd /tmp/popscle/build && cmake .. && make && cp /tmp/popscle/bin/popscle /usr/local/bin LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux dsc_pileup" -LABEL org.opencontainers.image.created="2024-11-15T11:56:02Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:52Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/freebayes/.config.vsh.yaml b/target/executable/genetic_demux/freebayes/.config.vsh.yaml index 138fc905..4433b37a 100644 --- a/target/executable/genetic_demux/freebayes/.config.vsh.yaml +++ b/target/executable/genetic_demux/freebayes/.config.vsh.yaml @@ -791,9 +791,9 @@ build_info: output: "target/executable/genetic_demux/freebayes" executable: "target/executable/genetic_demux/freebayes/freebayes" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/freebayes/freebayes b/target/executable/genetic_demux/freebayes/freebayes index 4d083b42..0f8a5b35 100755 --- a/target/executable/genetic_demux/freebayes/freebayes +++ b/target/executable/genetic_demux/freebayes/freebayes @@ -856,9 +856,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux freebayes" -LABEL org.opencontainers.image.created="2024-11-15T11:56:00Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:51Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/freemuxlet/.config.vsh.yaml b/target/executable/genetic_demux/freemuxlet/.config.vsh.yaml index 3d195e58..99b06785 100644 --- a/target/executable/genetic_demux/freemuxlet/.config.vsh.yaml +++ b/target/executable/genetic_demux/freemuxlet/.config.vsh.yaml @@ -363,9 +363,9 @@ build_info: output: "target/executable/genetic_demux/freemuxlet" executable: "target/executable/genetic_demux/freemuxlet/freemuxlet" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/freemuxlet/freemuxlet b/target/executable/genetic_demux/freemuxlet/freemuxlet index ac1a3e3a..0e377565 100755 --- a/target/executable/genetic_demux/freemuxlet/freemuxlet +++ b/target/executable/genetic_demux/freemuxlet/freemuxlet @@ -576,9 +576,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux freemuxlet" -LABEL org.opencontainers.image.created="2024-11-15T11:56:03Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/samtools/.config.vsh.yaml b/target/executable/genetic_demux/samtools/.config.vsh.yaml index 7f3946d2..2a17d66c 100644 --- a/target/executable/genetic_demux/samtools/.config.vsh.yaml +++ b/target/executable/genetic_demux/samtools/.config.vsh.yaml @@ -172,9 +172,9 @@ build_info: output: "target/executable/genetic_demux/samtools" executable: "target/executable/genetic_demux/samtools/samtools" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/samtools/samtools b/target/executable/genetic_demux/samtools/samtools index 08ad014f..9f9ecafa 100755 --- a/target/executable/genetic_demux/samtools/samtools +++ b/target/executable/genetic_demux/samtools/samtools @@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux samtools" -LABEL org.opencontainers.image.created="2024-11-15T11:56:03Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:54Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/scsplit/.config.vsh.yaml b/target/executable/genetic_demux/scsplit/.config.vsh.yaml index c11a00d2..6698de7d 100644 --- a/target/executable/genetic_demux/scsplit/.config.vsh.yaml +++ b/target/executable/genetic_demux/scsplit/.config.vsh.yaml @@ -296,9 +296,9 @@ build_info: output: "target/executable/genetic_demux/scsplit" executable: "target/executable/genetic_demux/scsplit/scsplit" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/scsplit/scsplit b/target/executable/genetic_demux/scsplit/scsplit index b8d10b67..f1d307ca 100755 --- a/target/executable/genetic_demux/scsplit/scsplit +++ b/target/executable/genetic_demux/scsplit/scsplit @@ -536,9 +536,9 @@ RUN pip install --upgrade pip && \ RUN git clone https://github.com/jon-xu/scSplit && cp scSplit/scSplit /usr/local/bin && rm -rf scSplit LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux scsplit" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:54Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/souporcell/.config.vsh.yaml b/target/executable/genetic_demux/souporcell/.config.vsh.yaml index 0ff6a08a..b8e93b6e 100644 --- a/target/executable/genetic_demux/souporcell/.config.vsh.yaml +++ b/target/executable/genetic_demux/souporcell/.config.vsh.yaml @@ -284,9 +284,9 @@ build_info: output: "target/executable/genetic_demux/souporcell" executable: "target/executable/genetic_demux/souporcell/souporcell" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/souporcell/souporcell b/target/executable/genetic_demux/souporcell/souporcell index a946feb9..4ba109a2 100755 --- a/target/executable/genetic_demux/souporcell/souporcell +++ b/target/executable/genetic_demux/souporcell/souporcell @@ -533,9 +533,9 @@ FROM cumulusprod/souporcell:2022.12 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux souporcell" -LABEL org.opencontainers.image.created="2024-11-15T11:56:03Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:53Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/genetic_demux/vireo/.config.vsh.yaml b/target/executable/genetic_demux/vireo/.config.vsh.yaml index afbb356f..a2d5acef 100644 --- a/target/executable/genetic_demux/vireo/.config.vsh.yaml +++ b/target/executable/genetic_demux/vireo/.config.vsh.yaml @@ -304,9 +304,9 @@ build_info: output: "target/executable/genetic_demux/vireo" executable: "target/executable/genetic_demux/vireo/vireo" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/genetic_demux/vireo/vireo b/target/executable/genetic_demux/vireo/vireo index e1b7a2eb..5029c237 100755 --- a/target/executable/genetic_demux/vireo/vireo +++ b/target/executable/genetic_demux/vireo/vireo @@ -541,9 +541,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Xichen Wu" LABEL org.opencontainers.image.description="Companion container for running component genetic_demux vireo" -LABEL org.opencontainers.image.created="2024-11-15T11:56:02Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:52Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/integrate/harmonypy/.config.vsh.yaml b/target/executable/integrate/harmonypy/.config.vsh.yaml index 861cdf0e..b9e0ca7e 100644 --- a/target/executable/integrate/harmonypy/.config.vsh.yaml +++ b/target/executable/integrate/harmonypy/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/executable/integrate/harmonypy" executable: "target/executable/integrate/harmonypy/harmonypy" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/integrate/harmonypy/harmonypy b/target/executable/integrate/harmonypy/harmonypy index 333e6c49..da25d444 100755 --- a/target/executable/integrate/harmonypy/harmonypy +++ b/target/executable/integrate/harmonypy/harmonypy @@ -507,9 +507,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component integrate harmonypy" -LABEL org.opencontainers.image.created="2024-11-15T11:56:16Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/integrate/scanorama/.config.vsh.yaml b/target/executable/integrate/scanorama/.config.vsh.yaml index 5f9734c8..81c8e317 100644 --- a/target/executable/integrate/scanorama/.config.vsh.yaml +++ b/target/executable/integrate/scanorama/.config.vsh.yaml @@ -296,9 +296,9 @@ build_info: output: "target/executable/integrate/scanorama" executable: "target/executable/integrate/scanorama/scanorama" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/integrate/scanorama/scanorama b/target/executable/integrate/scanorama/scanorama index acb08bf7..90e441a1 100755 --- a/target/executable/integrate/scanorama/scanorama +++ b/target/executable/integrate/scanorama/scanorama @@ -528,9 +528,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component integrate scanorama" -LABEL org.opencontainers.image.created="2024-11-15T11:56:17Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:08Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/integrate/scarches/.config.vsh.yaml b/target/executable/integrate/scarches/.config.vsh.yaml index 5388d791..010481d5 100644 --- a/target/executable/integrate/scarches/.config.vsh.yaml +++ b/target/executable/integrate/scarches/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/executable/integrate/scarches" executable: "target/executable/integrate/scarches/scarches" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/integrate/scarches/scarches b/target/executable/integrate/scarches/scarches index dc2379d8..200e2ec7 100755 --- a/target/executable/integrate/scarches/scarches +++ b/target/executable/integrate/scarches/scarches @@ -552,9 +552,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component integrate scarches" -LABEL org.opencontainers.image.created="2024-11-15T11:56:17Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:07Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/integrate/scvi/.config.vsh.yaml b/target/executable/integrate/scvi/.config.vsh.yaml index 970d5a20..de158ca1 100644 --- a/target/executable/integrate/scvi/.config.vsh.yaml +++ b/target/executable/integrate/scvi/.config.vsh.yaml @@ -578,9 +578,9 @@ build_info: output: "target/executable/integrate/scvi" executable: "target/executable/integrate/scvi/scvi" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/integrate/scvi/scvi b/target/executable/integrate/scvi/scvi index 77605ec7..7c1b8c46 100755 --- a/target/executable/integrate/scvi/scvi +++ b/target/executable/integrate/scvi/scvi @@ -683,9 +683,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Malte D. Luecken, Dries Schaumont, Matthias Beyens" LABEL org.opencontainers.image.description="Companion container for running component integrate scvi" -LABEL org.opencontainers.image.created="2024-11-15T11:56:16Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:07Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/integrate/totalvi/.config.vsh.yaml b/target/executable/integrate/totalvi/.config.vsh.yaml index 35e0feb4..bc147222 100644 --- a/target/executable/integrate/totalvi/.config.vsh.yaml +++ b/target/executable/integrate/totalvi/.config.vsh.yaml @@ -350,9 +350,9 @@ build_info: output: "target/executable/integrate/totalvi" executable: "target/executable/integrate/totalvi/totalvi" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/integrate/totalvi/totalvi b/target/executable/integrate/totalvi/totalvi index e930356a..b68a4c28 100755 --- a/target/executable/integrate/totalvi/totalvi +++ b/target/executable/integrate/totalvi/totalvi @@ -556,9 +556,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component integrate totalvi" -LABEL org.opencontainers.image.created="2024-11-15T11:56:17Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:08Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/interpret/lianapy/.config.vsh.yaml b/target/executable/interpret/lianapy/.config.vsh.yaml index 9bcb0611..0fa087a8 100644 --- a/target/executable/interpret/lianapy/.config.vsh.yaml +++ b/target/executable/interpret/lianapy/.config.vsh.yaml @@ -322,9 +322,9 @@ build_info: output: "target/executable/interpret/lianapy" executable: "target/executable/interpret/lianapy/lianapy" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/interpret/lianapy/lianapy b/target/executable/interpret/lianapy/lianapy index 6d89a414..4c0e32da 100755 --- a/target/executable/interpret/lianapy/lianapy +++ b/target/executable/interpret/lianapy/lianapy @@ -540,9 +540,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Mauro Saporita, Povilas Gibas" LABEL org.opencontainers.image.description="Companion container for running component interpret lianapy" -LABEL org.opencontainers.image.created="2024-11-15T11:55:57Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/labels_transfer/knn/.config.vsh.yaml b/target/executable/labels_transfer/knn/.config.vsh.yaml index 0e17c20a..484a9f22 100644 --- a/target/executable/labels_transfer/knn/.config.vsh.yaml +++ b/target/executable/labels_transfer/knn/.config.vsh.yaml @@ -450,9 +450,9 @@ build_info: output: "target/executable/labels_transfer/knn" executable: "target/executable/labels_transfer/knn/knn" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/labels_transfer/knn/knn b/target/executable/labels_transfer/knn/knn index c9f6599a..4ecf8c2c 100755 --- a/target/executable/labels_transfer/knn/knn +++ b/target/executable/labels_transfer/knn/knn @@ -571,9 +571,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component labels_transfer knn" -LABEL org.opencontainers.image.created="2024-11-15T11:55:57Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:48Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/labels_transfer/xgboost/.config.vsh.yaml b/target/executable/labels_transfer/xgboost/.config.vsh.yaml index 92fd2a43..2af4cce2 100644 --- a/target/executable/labels_transfer/xgboost/.config.vsh.yaml +++ b/target/executable/labels_transfer/xgboost/.config.vsh.yaml @@ -596,9 +596,9 @@ build_info: output: "target/executable/labels_transfer/xgboost" executable: "target/executable/labels_transfer/xgboost/xgboost" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/labels_transfer/xgboost/xgboost b/target/executable/labels_transfer/xgboost/xgboost index 2e8cdcf5..c02e3b5f 100755 --- a/target/executable/labels_transfer/xgboost/xgboost +++ b/target/executable/labels_transfer/xgboost/xgboost @@ -672,9 +672,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component labels_transfer xgboost" -LABEL org.opencontainers.image.created="2024-11-15T11:55:58Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:48Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/bd_rhapsody/.config.vsh.yaml b/target/executable/mapping/bd_rhapsody/.config.vsh.yaml index 0dfa769a..38d72d18 100644 --- a/target/executable/mapping/bd_rhapsody/.config.vsh.yaml +++ b/target/executable/mapping/bd_rhapsody/.config.vsh.yaml @@ -1122,9 +1122,9 @@ build_info: output: "target/executable/mapping/bd_rhapsody" executable: "target/executable/mapping/bd_rhapsody/bd_rhapsody" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/bd_rhapsody/bd_rhapsody b/target/executable/mapping/bd_rhapsody/bd_rhapsody index 06a9990c..266e58a3 100755 --- a/target/executable/mapping/bd_rhapsody/bd_rhapsody +++ b/target/executable/mapping/bd_rhapsody/bd_rhapsody @@ -947,9 +947,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component mapping bd_rhapsody" -LABEL org.opencontainers.image.created="2024-11-15T11:56:14Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:04Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/cellranger_atac_count/.config.vsh.yaml b/target/executable/mapping/cellranger_atac_count/.config.vsh.yaml index c4ad3421..7debcfe3 100644 --- a/target/executable/mapping/cellranger_atac_count/.config.vsh.yaml +++ b/target/executable/mapping/cellranger_atac_count/.config.vsh.yaml @@ -251,9 +251,9 @@ build_info: output: "target/executable/mapping/cellranger_atac_count" executable: "target/executable/mapping/cellranger_atac_count/cellranger_atac_count" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/cellranger_atac_count/cellranger_atac_count b/target/executable/mapping/cellranger_atac_count/cellranger_atac_count index 9528775c..d7817e27 100755 --- a/target/executable/mapping/cellranger_atac_count/cellranger_atac_count +++ b/target/executable/mapping/cellranger_atac_count/cellranger_atac_count @@ -516,9 +516,9 @@ RUN DEBIAN_FRONTEND=noninteractive apt update \ LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_atac_count" -LABEL org.opencontainers.image.created="2024-11-15T11:56:10Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:00Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/cellranger_count/.config.vsh.yaml b/target/executable/mapping/cellranger_count/.config.vsh.yaml index 8dc77649..09c02aa9 100644 --- a/target/executable/mapping/cellranger_count/.config.vsh.yaml +++ b/target/executable/mapping/cellranger_count/.config.vsh.yaml @@ -361,9 +361,9 @@ build_info: output: "target/executable/mapping/cellranger_count" executable: "target/executable/mapping/cellranger_count/cellranger_count" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/cellranger_count/cellranger_count b/target/executable/mapping/cellranger_count/cellranger_count index 21b683db..8c509be9 100755 --- a/target/executable/mapping/cellranger_count/cellranger_count +++ b/target/executable/mapping/cellranger_count/cellranger_count @@ -565,9 +565,9 @@ apt upgrade -y && apt install -y procps && rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Samuel D'Souza, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_count" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:03Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/cellranger_count_split/.config.vsh.yaml b/target/executable/mapping/cellranger_count_split/.config.vsh.yaml index 05320752..544ae1a8 100644 --- a/target/executable/mapping/cellranger_count_split/.config.vsh.yaml +++ b/target/executable/mapping/cellranger_count_split/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/executable/mapping/cellranger_count_split" executable: "target/executable/mapping/cellranger_count_split/cellranger_count_split" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/cellranger_count_split/cellranger_count_split b/target/executable/mapping/cellranger_count_split/cellranger_count_split index 8f0e4219..bee396a7 100755 --- a/target/executable/mapping/cellranger_count_split/cellranger_count_split +++ b/target/executable/mapping/cellranger_count_split/cellranger_count_split @@ -489,9 +489,9 @@ ENTRYPOINT [] RUN apt update && apt upgrade -y LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Samuel D'Souza, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_count_split" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:03Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/cellranger_multi/.config.vsh.yaml b/target/executable/mapping/cellranger_multi/.config.vsh.yaml index 00f9361d..454f3b2d 100644 --- a/target/executable/mapping/cellranger_multi/.config.vsh.yaml +++ b/target/executable/mapping/cellranger_multi/.config.vsh.yaml @@ -900,9 +900,9 @@ build_info: output: "target/executable/mapping/cellranger_multi" executable: "target/executable/mapping/cellranger_multi/cellranger_multi" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/cellranger_multi/cellranger_multi b/target/executable/mapping/cellranger_multi/cellranger_multi index 83903bd0..2022c2d3 100755 --- a/target/executable/mapping/cellranger_multi/cellranger_multi +++ b/target/executable/mapping/cellranger_multi/cellranger_multi @@ -922,9 +922,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt, Dries De Maeyer, Weiwei Schultz, Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component mapping cellranger_multi" -LABEL org.opencontainers.image.created="2024-11-15T11:56:10Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:00Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/htseq_count/.config.vsh.yaml b/target/executable/mapping/htseq_count/.config.vsh.yaml index 540c7e2f..2c95cec4 100644 --- a/target/executable/mapping/htseq_count/.config.vsh.yaml +++ b/target/executable/mapping/htseq_count/.config.vsh.yaml @@ -421,9 +421,9 @@ build_info: output: "target/executable/mapping/htseq_count" executable: "target/executable/mapping/htseq_count/htseq_count" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/htseq_count/htseq_count b/target/executable/mapping/htseq_count/htseq_count index b67e836b..16038e18 100755 --- a/target/executable/mapping/htseq_count/htseq_count +++ b/target/executable/mapping/htseq_count/htseq_count @@ -597,9 +597,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco" LABEL org.opencontainers.image.description="Companion container for running component mapping htseq_count" -LABEL org.opencontainers.image.created="2024-11-15T11:56:14Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/htseq_count_to_h5mu/.config.vsh.yaml b/target/executable/mapping/htseq_count_to_h5mu/.config.vsh.yaml index d2e81d5b..ecc3c497 100644 --- a/target/executable/mapping/htseq_count_to_h5mu/.config.vsh.yaml +++ b/target/executable/mapping/htseq_count_to_h5mu/.config.vsh.yaml @@ -227,9 +227,9 @@ build_info: output: "target/executable/mapping/htseq_count_to_h5mu" executable: "target/executable/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu b/target/executable/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu index d790c95e..a4589ce4 100755 --- a/target/executable/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu +++ b/target/executable/mapping/htseq_count_to_h5mu/htseq_count_to_h5mu @@ -492,9 +492,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco" LABEL org.opencontainers.image.description="Companion container for running component mapping htseq_count_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:11Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:01Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/multi_star/.config.vsh.yaml b/target/executable/mapping/multi_star/.config.vsh.yaml index 236a313b..b24861be 100644 --- a/target/executable/mapping/multi_star/.config.vsh.yaml +++ b/target/executable/mapping/multi_star/.config.vsh.yaml @@ -2902,9 +2902,9 @@ build_info: output: "target/executable/mapping/multi_star" executable: "target/executable/mapping/multi_star/multi_star" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/multi_star/multi_star b/target/executable/mapping/multi_star/multi_star index fa0cec40..3c0333c2 100755 --- a/target/executable/mapping/multi_star/multi_star +++ b/target/executable/mapping/multi_star/multi_star @@ -1932,9 +1932,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component mapping multi_star" -LABEL org.opencontainers.image.created="2024-11-15T11:56:09Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:59Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/multi_star_to_h5mu/.config.vsh.yaml b/target/executable/mapping/multi_star_to_h5mu/.config.vsh.yaml index 01ac7bfb..e105dd88 100644 --- a/target/executable/mapping/multi_star_to_h5mu/.config.vsh.yaml +++ b/target/executable/mapping/multi_star_to_h5mu/.config.vsh.yaml @@ -201,9 +201,9 @@ build_info: output: "target/executable/mapping/multi_star_to_h5mu" executable: "target/executable/mapping/multi_star_to_h5mu/multi_star_to_h5mu" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/multi_star_to_h5mu/multi_star_to_h5mu b/target/executable/mapping/multi_star_to_h5mu/multi_star_to_h5mu index 66bbcae5..d4ccd0d8 100755 --- a/target/executable/mapping/multi_star_to_h5mu/multi_star_to_h5mu +++ b/target/executable/mapping/multi_star_to_h5mu/multi_star_to_h5mu @@ -481,9 +481,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco" LABEL org.opencontainers.image.description="Companion container for running component mapping multi_star_to_h5mu" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:02Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/samtools_sort/.config.vsh.yaml b/target/executable/mapping/samtools_sort/.config.vsh.yaml index 02e29eed..60b32356 100644 --- a/target/executable/mapping/samtools_sort/.config.vsh.yaml +++ b/target/executable/mapping/samtools_sort/.config.vsh.yaml @@ -281,9 +281,9 @@ build_info: output: "target/executable/mapping/samtools_sort" executable: "target/executable/mapping/samtools_sort/samtools_sort" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/samtools_sort/samtools_sort b/target/executable/mapping/samtools_sort/samtools_sort index 13779285..00784590 100755 --- a/target/executable/mapping/samtools_sort/samtools_sort +++ b/target/executable/mapping/samtools_sort/samtools_sort @@ -537,9 +537,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Angela Oliveira Pisco" LABEL org.opencontainers.image.description="Companion container for running component mapping samtools_sort" -LABEL org.opencontainers.image.created="2024-11-15T11:56:10Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:01Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/star_align/.config.vsh.yaml b/target/executable/mapping/star_align/.config.vsh.yaml index 3d6bf467..0174280b 100644 --- a/target/executable/mapping/star_align/.config.vsh.yaml +++ b/target/executable/mapping/star_align/.config.vsh.yaml @@ -2369,9 +2369,9 @@ build_info: output: "target/executable/mapping/star_align" executable: "target/executable/mapping/star_align/star_align" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/star_align/star_align b/target/executable/mapping/star_align/star_align index 2d7f1f20..9528993d 100755 --- a/target/executable/mapping/star_align/star_align +++ b/target/executable/mapping/star_align/star_align @@ -1860,9 +1860,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component mapping star_align" -LABEL org.opencontainers.image.created="2024-11-15T11:56:13Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:03Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/mapping/star_align_v273a/.config.vsh.yaml b/target/executable/mapping/star_align_v273a/.config.vsh.yaml index b04dbb82..35c9ed8a 100644 --- a/target/executable/mapping/star_align_v273a/.config.vsh.yaml +++ b/target/executable/mapping/star_align_v273a/.config.vsh.yaml @@ -2369,9 +2369,9 @@ build_info: output: "target/executable/mapping/star_align_v273a" executable: "target/executable/mapping/star_align_v273a/star_align_v273a" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/mapping/star_align_v273a/star_align_v273a b/target/executable/mapping/star_align_v273a/star_align_v273a index ecc26fad..08b90c97 100755 --- a/target/executable/mapping/star_align_v273a/star_align_v273a +++ b/target/executable/mapping/star_align_v273a/star_align_v273a @@ -1860,9 +1860,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component mapping star_align_v273a" -LABEL org.opencontainers.image.created="2024-11-15T11:56:11Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:01Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/add_id/.config.vsh.yaml b/target/executable/metadata/add_id/.config.vsh.yaml index c89c119f..82cf9616 100644 --- a/target/executable/metadata/add_id/.config.vsh.yaml +++ b/target/executable/metadata/add_id/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/executable/metadata/add_id" executable: "target/executable/metadata/add_id/add_id" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/add_id/add_id b/target/executable/metadata/add_id/add_id index e8f5e8cc..2d928b8b 100755 --- a/target/executable/metadata/add_id/add_id +++ b/target/executable/metadata/add_id/add_id @@ -493,9 +493,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component metadata add_id" -LABEL org.opencontainers.image.created="2024-11-15T11:56:05Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/copy_obs/.config.vsh.yaml b/target/executable/metadata/copy_obs/.config.vsh.yaml index 983f1aa3..ffbe34a5 100644 --- a/target/executable/metadata/copy_obs/.config.vsh.yaml +++ b/target/executable/metadata/copy_obs/.config.vsh.yaml @@ -223,9 +223,9 @@ build_info: output: "target/executable/metadata/copy_obs" executable: "target/executable/metadata/copy_obs/copy_obs" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/copy_obs/copy_obs b/target/executable/metadata/copy_obs/copy_obs index 747430b3..3c2319c0 100755 --- a/target/executable/metadata/copy_obs/copy_obs +++ b/target/executable/metadata/copy_obs/copy_obs @@ -493,9 +493,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component metadata copy_obs" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:55Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/duplicate_var/.config.vsh.yaml b/target/executable/metadata/duplicate_var/.config.vsh.yaml index 074ea3aa..d3b19e61 100644 --- a/target/executable/metadata/duplicate_var/.config.vsh.yaml +++ b/target/executable/metadata/duplicate_var/.config.vsh.yaml @@ -233,9 +233,9 @@ build_info: output: "target/executable/metadata/duplicate_var" executable: "target/executable/metadata/duplicate_var/duplicate_var" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/duplicate_var/duplicate_var b/target/executable/metadata/duplicate_var/duplicate_var index 4686ce49..f8633f84 100755 --- a/target/executable/metadata/duplicate_var/duplicate_var +++ b/target/executable/metadata/duplicate_var/duplicate_var @@ -501,9 +501,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen" LABEL org.opencontainers.image.description="Companion container for running component metadata duplicate_var" -LABEL org.opencontainers.image.created="2024-11-15T11:56:05Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:55Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/grep_annotation_column/.config.vsh.yaml b/target/executable/metadata/grep_annotation_column/.config.vsh.yaml index 69ebab05..703ed1de 100644 --- a/target/executable/metadata/grep_annotation_column/.config.vsh.yaml +++ b/target/executable/metadata/grep_annotation_column/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/executable/metadata/grep_annotation_column" executable: "target/executable/metadata/grep_annotation_column/grep_annotation_column" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/grep_annotation_column/grep_annotation_column b/target/executable/metadata/grep_annotation_column/grep_annotation_column index 406ec9fd..3fb503a0 100755 --- a/target/executable/metadata/grep_annotation_column/grep_annotation_column +++ b/target/executable/metadata/grep_annotation_column/grep_annotation_column @@ -526,9 +526,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component metadata grep_annotation_column" -LABEL org.opencontainers.image.created="2024-11-15T11:56:04Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:55Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/join_csv/.config.vsh.yaml b/target/executable/metadata/join_csv/.config.vsh.yaml index d05d3437..d59e75d8 100644 --- a/target/executable/metadata/join_csv/.config.vsh.yaml +++ b/target/executable/metadata/join_csv/.config.vsh.yaml @@ -252,9 +252,9 @@ build_info: output: "target/executable/metadata/join_csv" executable: "target/executable/metadata/join_csv/join_csv" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/join_csv/join_csv b/target/executable/metadata/join_csv/join_csv index 528a534b..155bbb80 100755 --- a/target/executable/metadata/join_csv/join_csv +++ b/target/executable/metadata/join_csv/join_csv @@ -509,9 +509,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component metadata join_csv" -LABEL org.opencontainers.image.created="2024-11-15T11:56:06Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/join_uns_to_obs/.config.vsh.yaml b/target/executable/metadata/join_uns_to_obs/.config.vsh.yaml index b98a0f43..3282dba0 100644 --- a/target/executable/metadata/join_uns_to_obs/.config.vsh.yaml +++ b/target/executable/metadata/join_uns_to_obs/.config.vsh.yaml @@ -199,9 +199,9 @@ build_info: output: "target/executable/metadata/join_uns_to_obs" executable: "target/executable/metadata/join_uns_to_obs/join_uns_to_obs" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/join_uns_to_obs/join_uns_to_obs b/target/executable/metadata/join_uns_to_obs/join_uns_to_obs index 8bc552ef..ec910793 100755 --- a/target/executable/metadata/join_uns_to_obs/join_uns_to_obs +++ b/target/executable/metadata/join_uns_to_obs/join_uns_to_obs @@ -484,9 +484,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "anndata==0.10.8" "mudata~=0.2.4" "pandas!=2.1.2" "numpy<2.0.0" LABEL org.opencontainers.image.description="Companion container for running component metadata join_uns_to_obs" -LABEL org.opencontainers.image.created="2024-11-15T11:56:06Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/metadata/move_obsm_to_obs/.config.vsh.yaml b/target/executable/metadata/move_obsm_to_obs/.config.vsh.yaml index 1e67ffbf..8f09981b 100644 --- a/target/executable/metadata/move_obsm_to_obs/.config.vsh.yaml +++ b/target/executable/metadata/move_obsm_to_obs/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/executable/metadata/move_obsm_to_obs" executable: "target/executable/metadata/move_obsm_to_obs/move_obsm_to_obs" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/metadata/move_obsm_to_obs/move_obsm_to_obs b/target/executable/metadata/move_obsm_to_obs/move_obsm_to_obs index 0c412b09..4880acea 100755 --- a/target/executable/metadata/move_obsm_to_obs/move_obsm_to_obs +++ b/target/executable/metadata/move_obsm_to_obs/move_obsm_to_obs @@ -492,9 +492,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component metadata move_obsm_to_obs" -LABEL org.opencontainers.image.created="2024-11-15T11:56:05Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/neighbors/bbknn/.config.vsh.yaml b/target/executable/neighbors/bbknn/.config.vsh.yaml index 5785c59c..aaad7353 100644 --- a/target/executable/neighbors/bbknn/.config.vsh.yaml +++ b/target/executable/neighbors/bbknn/.config.vsh.yaml @@ -302,9 +302,9 @@ build_info: output: "target/executable/neighbors/bbknn" executable: "target/executable/neighbors/bbknn/bbknn" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/neighbors/bbknn/bbknn b/target/executable/neighbors/bbknn/bbknn index 4e5443cf..0665ba9a 100755 --- a/target/executable/neighbors/bbknn/bbknn +++ b/target/executable/neighbors/bbknn/bbknn @@ -534,9 +534,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component neighbors bbknn" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:46Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/neighbors/find_neighbors/.config.vsh.yaml b/target/executable/neighbors/find_neighbors/.config.vsh.yaml index b5f12715..91e42e73 100644 --- a/target/executable/neighbors/find_neighbors/.config.vsh.yaml +++ b/target/executable/neighbors/find_neighbors/.config.vsh.yaml @@ -351,9 +351,9 @@ build_info: output: "target/executable/neighbors/find_neighbors" executable: "target/executable/neighbors/find_neighbors/find_neighbors" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/neighbors/find_neighbors/find_neighbors b/target/executable/neighbors/find_neighbors/find_neighbors index d0c2f7d8..7643f6f2 100755 --- a/target/executable/neighbors/find_neighbors/find_neighbors +++ b/target/executable/neighbors/find_neighbors/find_neighbors @@ -549,9 +549,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component neighbors find_neighbors" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:45Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/process_10xh5/filter_10xh5/.config.vsh.yaml b/target/executable/process_10xh5/filter_10xh5/.config.vsh.yaml index 2e2f74b9..faa7023b 100644 --- a/target/executable/process_10xh5/filter_10xh5/.config.vsh.yaml +++ b/target/executable/process_10xh5/filter_10xh5/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/executable/process_10xh5/filter_10xh5" executable: "target/executable/process_10xh5/filter_10xh5/filter_10xh5" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/process_10xh5/filter_10xh5/filter_10xh5 b/target/executable/process_10xh5/filter_10xh5/filter_10xh5 index f09efd37..82676475 100755 --- a/target/executable/process_10xh5/filter_10xh5/filter_10xh5 +++ b/target/executable/process_10xh5/filter_10xh5/filter_10xh5 @@ -502,9 +502,9 @@ RUN Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packag LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component process_10xh5 filter_10xh5" -LABEL org.opencontainers.image.created="2024-11-15T11:55:53Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:44Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/qc/calculate_qc_metrics/.config.vsh.yaml b/target/executable/qc/calculate_qc_metrics/.config.vsh.yaml index ee44659c..9ef6ce50 100644 --- a/target/executable/qc/calculate_qc_metrics/.config.vsh.yaml +++ b/target/executable/qc/calculate_qc_metrics/.config.vsh.yaml @@ -334,9 +334,9 @@ build_info: output: "target/executable/qc/calculate_qc_metrics" executable: "target/executable/qc/calculate_qc_metrics/calculate_qc_metrics" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/qc/calculate_qc_metrics/calculate_qc_metrics b/target/executable/qc/calculate_qc_metrics/calculate_qc_metrics index 7fe28a35..61692cf0 100755 --- a/target/executable/qc/calculate_qc_metrics/calculate_qc_metrics +++ b/target/executable/qc/calculate_qc_metrics/calculate_qc_metrics @@ -572,9 +572,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component qc calculate_qc_metrics" -LABEL org.opencontainers.image.created="2024-11-15T11:55:57Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:48Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/qc/fastqc/.config.vsh.yaml b/target/executable/qc/fastqc/.config.vsh.yaml index 403aa35c..838f2b23 100644 --- a/target/executable/qc/fastqc/.config.vsh.yaml +++ b/target/executable/qc/fastqc/.config.vsh.yaml @@ -175,9 +175,9 @@ build_info: output: "target/executable/qc/fastqc" executable: "target/executable/qc/fastqc/fastqc" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/qc/fastqc/fastqc b/target/executable/qc/fastqc/fastqc index e9f11b3b..d2459c3b 100755 --- a/target/executable/qc/fastqc/fastqc +++ b/target/executable/qc/fastqc/fastqc @@ -481,9 +481,9 @@ RUN apt-get update && \ rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.description="Companion container for running component qc fastqc" -LABEL org.opencontainers.image.created="2024-11-15T11:55:58Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:48Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/qc/multiqc/.config.vsh.yaml b/target/executable/qc/multiqc/.config.vsh.yaml index 65ee79b1..3d001ef1 100644 --- a/target/executable/qc/multiqc/.config.vsh.yaml +++ b/target/executable/qc/multiqc/.config.vsh.yaml @@ -161,9 +161,9 @@ build_info: output: "target/executable/qc/multiqc" executable: "target/executable/qc/multiqc/multiqc" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/qc/multiqc/multiqc b/target/executable/qc/multiqc/multiqc index 7cdbbb18..d0d029e9 100755 --- a/target/executable/qc/multiqc/multiqc +++ b/target/executable/qc/multiqc/multiqc @@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "multiqc" LABEL org.opencontainers.image.description="Companion container for running component qc multiqc" -LABEL org.opencontainers.image.created="2024-11-15T11:55:58Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:48Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/query/cellxgene_census/.config.vsh.yaml b/target/executable/query/cellxgene_census/.config.vsh.yaml index ca5c264c..ae73baa8 100644 --- a/target/executable/query/cellxgene_census/.config.vsh.yaml +++ b/target/executable/query/cellxgene_census/.config.vsh.yaml @@ -524,9 +524,9 @@ build_info: output: "target/executable/query/cellxgene_census" executable: "target/executable/query/cellxgene_census/cellxgene_census" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/query/cellxgene_census/cellxgene_census b/target/executable/query/cellxgene_census/cellxgene_census index 6a358ca1..c711e073 100755 --- a/target/executable/query/cellxgene_census/cellxgene_census +++ b/target/executable/query/cellxgene_census/cellxgene_census @@ -563,9 +563,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Matthias Beyens, Dries De Maeyer, Robrecht Cannoodt, Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component query cellxgene_census" -LABEL org.opencontainers.image.created="2024-11-15T11:56:05Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/reference/build_bdrhap_reference/.config.vsh.yaml b/target/executable/reference/build_bdrhap_reference/.config.vsh.yaml index f1234c1d..b826be91 100644 --- a/target/executable/reference/build_bdrhap_reference/.config.vsh.yaml +++ b/target/executable/reference/build_bdrhap_reference/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/executable/reference/build_bdrhap_reference" executable: "target/executable/reference/build_bdrhap_reference/build_bdrhap_reference" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/reference/build_bdrhap_reference/build_bdrhap_reference b/target/executable/reference/build_bdrhap_reference/build_bdrhap_reference index 7a50558c..33ac4e03 100755 --- a/target/executable/reference/build_bdrhap_reference/build_bdrhap_reference +++ b/target/executable/reference/build_bdrhap_reference/build_bdrhap_reference @@ -546,9 +546,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component reference build_bdrhap_reference" -LABEL org.opencontainers.image.created="2024-11-15T11:56:07Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:57Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/reference/build_cellranger_arc_reference/.config.vsh.yaml b/target/executable/reference/build_cellranger_arc_reference/.config.vsh.yaml index 3ef289d5..daed6610 100644 --- a/target/executable/reference/build_cellranger_arc_reference/.config.vsh.yaml +++ b/target/executable/reference/build_cellranger_arc_reference/.config.vsh.yaml @@ -245,9 +245,9 @@ build_info: output: "target/executable/reference/build_cellranger_arc_reference" executable: "target/executable/reference/build_cellranger_arc_reference/build_cellranger_arc_reference" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/reference/build_cellranger_arc_reference/build_cellranger_arc_reference b/target/executable/reference/build_cellranger_arc_reference/build_cellranger_arc_reference index 57c27191..ac9bbcbf 100755 --- a/target/executable/reference/build_cellranger_arc_reference/build_cellranger_arc_reference +++ b/target/executable/reference/build_cellranger_arc_reference/build_cellranger_arc_reference @@ -509,9 +509,9 @@ apt upgrade -y && apt install -y procps pigz && rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component reference build_cellranger_arc_reference" -LABEL org.opencontainers.image.created="2024-11-15T11:56:07Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:58Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/reference/build_cellranger_reference/.config.vsh.yaml b/target/executable/reference/build_cellranger_reference/.config.vsh.yaml index 48642d8d..f2250aba 100644 --- a/target/executable/reference/build_cellranger_reference/.config.vsh.yaml +++ b/target/executable/reference/build_cellranger_reference/.config.vsh.yaml @@ -213,9 +213,9 @@ build_info: output: "target/executable/reference/build_cellranger_reference" executable: "target/executable/reference/build_cellranger_reference/build_cellranger_reference" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/reference/build_cellranger_reference/build_cellranger_reference b/target/executable/reference/build_cellranger_reference/build_cellranger_reference index 3b089a71..1653f8d9 100755 --- a/target/executable/reference/build_cellranger_reference/build_cellranger_reference +++ b/target/executable/reference/build_cellranger_reference/build_cellranger_reference @@ -481,9 +481,9 @@ apt upgrade -y && apt install -y procps pigz && rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component reference build_cellranger_reference" -LABEL org.opencontainers.image.created="2024-11-15T11:56:07Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:58Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/reference/build_star_reference/.config.vsh.yaml b/target/executable/reference/build_star_reference/.config.vsh.yaml index 6400639f..1c21512b 100644 --- a/target/executable/reference/build_star_reference/.config.vsh.yaml +++ b/target/executable/reference/build_star_reference/.config.vsh.yaml @@ -207,9 +207,9 @@ build_info: output: "target/executable/reference/build_star_reference" executable: "target/executable/reference/build_star_reference/build_star_reference" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/reference/build_star_reference/build_star_reference b/target/executable/reference/build_star_reference/build_star_reference index 354a81ac..76014c2a 100755 --- a/target/executable/reference/build_star_reference/build_star_reference +++ b/target/executable/reference/build_star_reference/build_star_reference @@ -508,9 +508,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component reference build_star_reference" -LABEL org.opencontainers.image.created="2024-11-15T11:56:08Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:58Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/reference/cellranger_mkgtf/.config.vsh.yaml b/target/executable/reference/cellranger_mkgtf/.config.vsh.yaml index 3994be02..4956b1c2 100644 --- a/target/executable/reference/cellranger_mkgtf/.config.vsh.yaml +++ b/target/executable/reference/cellranger_mkgtf/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/executable/reference/cellranger_mkgtf" executable: "target/executable/reference/cellranger_mkgtf/cellranger_mkgtf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/reference/cellranger_mkgtf/cellranger_mkgtf b/target/executable/reference/cellranger_mkgtf/cellranger_mkgtf index ab6576fb..2dd35404 100755 --- a/target/executable/reference/cellranger_mkgtf/cellranger_mkgtf +++ b/target/executable/reference/cellranger_mkgtf/cellranger_mkgtf @@ -476,9 +476,9 @@ apt upgrade -y && apt install -y pigz procps && rm -rf /var/lib/apt/lists/* LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component reference cellranger_mkgtf" -LABEL org.opencontainers.image.created="2024-11-15T11:56:08Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:59Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/reference/make_reference/.config.vsh.yaml b/target/executable/reference/make_reference/.config.vsh.yaml index 58434a85..19f33f51 100644 --- a/target/executable/reference/make_reference/.config.vsh.yaml +++ b/target/executable/reference/make_reference/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/executable/reference/make_reference" executable: "target/executable/reference/make_reference/make_reference" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/reference/make_reference/make_reference b/target/executable/reference/make_reference/make_reference index 7efa9255..1b1217fd 100755 --- a/target/executable/reference/make_reference/make_reference +++ b/target/executable/reference/make_reference/make_reference @@ -499,9 +499,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Angela Oliveira Pisco, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component reference make_reference" -LABEL org.opencontainers.image.created="2024-11-15T11:56:08Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:59Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/report/mermaid/.config.vsh.yaml b/target/executable/report/mermaid/.config.vsh.yaml index ba3a32b9..116fc9e4 100644 --- a/target/executable/report/mermaid/.config.vsh.yaml +++ b/target/executable/report/mermaid/.config.vsh.yaml @@ -202,9 +202,9 @@ build_info: output: "target/executable/report/mermaid" executable: "target/executable/report/mermaid/mermaid" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/report/mermaid/mermaid b/target/executable/report/mermaid/mermaid index 8bcd4729..6a8bd05d 100755 --- a/target/executable/report/mermaid/mermaid +++ b/target/executable/report/mermaid/mermaid @@ -494,9 +494,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Dries De Maeyer" LABEL org.opencontainers.image.description="Companion container for running component report mermaid" -LABEL org.opencontainers.image.created="2024-11-15T11:56:16Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/scgpt/binning/.config.vsh.yaml b/target/executable/scgpt/binning/.config.vsh.yaml index ad6d5ec8..afd9fe63 100644 --- a/target/executable/scgpt/binning/.config.vsh.yaml +++ b/target/executable/scgpt/binning/.config.vsh.yaml @@ -249,9 +249,9 @@ build_info: output: "target/executable/scgpt/binning" executable: "target/executable/scgpt/binning/binning" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/scgpt/binning/binning b/target/executable/scgpt/binning/binning index f4f164cd..b629bcd6 100755 --- a/target/executable/scgpt/binning/binning +++ b/target/executable/scgpt/binning/binning @@ -509,9 +509,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Elizabeth Mlynarski, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component scgpt binning" -LABEL org.opencontainers.image.created="2024-11-15T11:56:16Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:07Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/scgpt/cell_type_annotation/.config.vsh.yaml b/target/executable/scgpt/cell_type_annotation/.config.vsh.yaml index 09c401f2..b2424059 100644 --- a/target/executable/scgpt/cell_type_annotation/.config.vsh.yaml +++ b/target/executable/scgpt/cell_type_annotation/.config.vsh.yaml @@ -402,9 +402,9 @@ build_info: output: "target/executable/scgpt/cell_type_annotation" executable: "target/executable/scgpt/cell_type_annotation/cell_type_annotation" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/scgpt/cell_type_annotation/cell_type_annotation b/target/executable/scgpt/cell_type_annotation/cell_type_annotation index cb15b276..90a6ad86 100755 --- a/target/executable/scgpt/cell_type_annotation/cell_type_annotation +++ b/target/executable/scgpt/cell_type_annotation/cell_type_annotation @@ -570,9 +570,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component scgpt cell_type_annotation" -LABEL org.opencontainers.image.created="2024-11-15T11:56:16Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:07Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/scgpt/cross_check_genes/.config.vsh.yaml b/target/executable/scgpt/cross_check_genes/.config.vsh.yaml index 71b3d548..045fdfc4 100644 --- a/target/executable/scgpt/cross_check_genes/.config.vsh.yaml +++ b/target/executable/scgpt/cross_check_genes/.config.vsh.yaml @@ -278,9 +278,9 @@ build_info: output: "target/executable/scgpt/cross_check_genes" executable: "target/executable/scgpt/cross_check_genes/cross_check_genes" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/scgpt/cross_check_genes/cross_check_genes b/target/executable/scgpt/cross_check_genes/cross_check_genes index 2b57aabc..c5fcfd18 100755 --- a/target/executable/scgpt/cross_check_genes/cross_check_genes +++ b/target/executable/scgpt/cross_check_genes/cross_check_genes @@ -504,9 +504,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik, Dorien Roosen, Elizabeth Mlynarski, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component scgpt cross_check_genes" -LABEL org.opencontainers.image.created="2024-11-15T11:56:15Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/scgpt/embedding/.config.vsh.yaml b/target/executable/scgpt/embedding/.config.vsh.yaml index 7d9f5ce7..479f6bea 100644 --- a/target/executable/scgpt/embedding/.config.vsh.yaml +++ b/target/executable/scgpt/embedding/.config.vsh.yaml @@ -380,9 +380,9 @@ build_info: output: "target/executable/scgpt/embedding" executable: "target/executable/scgpt/embedding/embedding" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/scgpt/embedding/embedding b/target/executable/scgpt/embedding/embedding index 586f48fc..671449b7 100755 --- a/target/executable/scgpt/embedding/embedding +++ b/target/executable/scgpt/embedding/embedding @@ -570,9 +570,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Elizabeth Mlynarski, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component scgpt embedding" -LABEL org.opencontainers.image.created="2024-11-15T11:56:16Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/scgpt/pad_tokenize/.config.vsh.yaml b/target/executable/scgpt/pad_tokenize/.config.vsh.yaml index efe46ce5..35f78bb1 100644 --- a/target/executable/scgpt/pad_tokenize/.config.vsh.yaml +++ b/target/executable/scgpt/pad_tokenize/.config.vsh.yaml @@ -308,9 +308,9 @@ build_info: output: "target/executable/scgpt/pad_tokenize" executable: "target/executable/scgpt/pad_tokenize/pad_tokenize" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/scgpt/pad_tokenize/pad_tokenize b/target/executable/scgpt/pad_tokenize/pad_tokenize index 1d4e4fe8..54197597 100755 --- a/target/executable/scgpt/pad_tokenize/pad_tokenize +++ b/target/executable/scgpt/pad_tokenize/pad_tokenize @@ -535,9 +535,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Elizabeth Mlynarski, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component scgpt pad_tokenize" -LABEL org.opencontainers.image.created="2024-11-15T11:56:15Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:06Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml b/target/executable/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml index b3e39d2b..7520662f 100644 --- a/target/executable/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml +++ b/target/executable/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/executable/test_workflows/ingestion/bd_rhapsody_test" executable: "target/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test b/target/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test index 41644a1b..32a6c05e 100755 --- a/target/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test +++ b/target/executable/test_workflows/ingestion/bd_rhapsody_test/bd_rhapsody_test @@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion bd_rhapsody_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:03Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml b/target/executable/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml index e0f1d6f9..81316f92 100644 --- a/target/executable/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml +++ b/target/executable/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/executable/test_workflows/ingestion/cellranger_mapping_test" executable: "target/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test b/target/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test index 409c460c..30b7c862 100755 --- a/target/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test +++ b/target/executable/test_workflows/ingestion/cellranger_mapping_test/cellranger_mapping_test @@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion cellranger_mapping_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:13Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:03Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml b/target/executable/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml index d60d2b79..c0988210 100644 --- a/target/executable/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml +++ b/target/executable/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/executable/test_workflows/ingestion/cellranger_multi_test" executable: "target/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test b/target/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test index 4eba91f3..b04f0a5f 100755 --- a/target/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test +++ b/target/executable/test_workflows/ingestion/cellranger_multi_test/cellranger_multi_test @@ -474,9 +474,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion cellranger_multi_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:02Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml b/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml index d7e88d32..a443a406 100644 --- a/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml +++ b/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/executable/test_workflows/ingestion/cellranger_postprocessing_test" executable: "target/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test b/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test index 1ae17ac2..1c368b6c 100755 --- a/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test +++ b/target/executable/test_workflows/ingestion/cellranger_postprocessing_test/cellranger_postprocessing_test @@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion cellranger_postprocessing_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:03Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/ingestion/conversion_test/.config.vsh.yaml b/target/executable/test_workflows/ingestion/conversion_test/.config.vsh.yaml index d33c4d17..b7979282 100644 --- a/target/executable/test_workflows/ingestion/conversion_test/.config.vsh.yaml +++ b/target/executable/test_workflows/ingestion/conversion_test/.config.vsh.yaml @@ -152,9 +152,9 @@ build_info: output: "target/executable/test_workflows/ingestion/conversion_test" executable: "target/executable/test_workflows/ingestion/conversion_test/conversion_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/ingestion/conversion_test/conversion_test b/target/executable/test_workflows/ingestion/conversion_test/conversion_test index 4a115009..58eb870f 100755 --- a/target/executable/test_workflows/ingestion/conversion_test/conversion_test +++ b/target/executable/test_workflows/ingestion/conversion_test/conversion_test @@ -471,9 +471,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/ingestion conversion_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:12Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:02Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml b/target/executable/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml index f324a047..f311cba4 100644 --- a/target/executable/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml +++ b/target/executable/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml @@ -147,9 +147,9 @@ build_info: output: "target/executable/test_workflows/multiomics/dimensionality_reduction_test" executable: "target/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test b/target/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test index 66366270..9983169b 100755 --- a/target/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test +++ b/target/executable/test_workflows/multiomics/dimensionality_reduction_test/dimensionality_reduction_test @@ -470,9 +470,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics dimensionality_reduction_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:14Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:04Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml b/target/executable/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml index 77d2b5d4..e4be91c4 100644 --- a/target/executable/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml +++ b/target/executable/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml @@ -72,6 +72,8 @@ runners: - type: "nextflow" id: "nextflow" directives: + label: + - "midmem" tag: "$id" auto: simplifyInput: true @@ -171,9 +173,9 @@ build_info: output: "target/executable/test_workflows/multiomics/process_batches/workflow_test" executable: "target/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test b/target/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test index 97012cd6..0f234239 100755 --- a/target/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test +++ b/target/executable/test_workflows/multiomics/process_batches/workflow_test/workflow_test @@ -479,9 +479,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics/process_batches workflow_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:13Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:04Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml b/target/executable/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml index 0cd3d962..70c22494 100644 --- a/target/executable/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml +++ b/target/executable/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml @@ -72,6 +72,8 @@ runners: - type: "nextflow" id: "nextflow" directives: + label: + - "midmem" tag: "$id" auto: simplifyInput: true @@ -171,9 +173,9 @@ build_info: output: "target/executable/test_workflows/multiomics/process_batches/workflow_test2" executable: "target/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2 b/target/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2 index 36ef441f..e6ce8106 100755 --- a/target/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2 +++ b/target/executable/test_workflows/multiomics/process_batches/workflow_test2/workflow_test2 @@ -479,9 +479,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics/process_batches workflow_test2" -LABEL org.opencontainers.image.created="2024-11-15T11:56:13Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:04Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml b/target/executable/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml index a403a435..8892f65b 100644 --- a/target/executable/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml +++ b/target/executable/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml @@ -182,9 +182,9 @@ build_info: output: "target/executable/test_workflows/multiomics/split_modalities_test" executable: "target/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test b/target/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test index cb09d254..6c8bc9a7 100755 --- a/target/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test +++ b/target/executable/test_workflows/multiomics/split_modalities_test/split_modalities_test @@ -483,9 +483,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Kai Waldrant" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/multiomics split_modalities_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:14Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:04Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/test_workflows/qc/qc_test/.config.vsh.yaml b/target/executable/test_workflows/qc/qc_test/.config.vsh.yaml index de90f9f2..f2380867 100644 --- a/target/executable/test_workflows/qc/qc_test/.config.vsh.yaml +++ b/target/executable/test_workflows/qc/qc_test/.config.vsh.yaml @@ -170,9 +170,9 @@ build_info: output: "target/executable/test_workflows/qc/qc_test" executable: "target/executable/test_workflows/qc/qc_test/qc_test" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/test_workflows/qc/qc_test/qc_test b/target/executable/test_workflows/qc/qc_test/qc_test index adaadf4e..70d56138 100755 --- a/target/executable/test_workflows/qc/qc_test/qc_test +++ b/target/executable/test_workflows/qc/qc_test/qc_test @@ -478,9 +478,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Jakub Majercik" LABEL org.opencontainers.image.description="Companion container for running component test_workflows/qc qc_test" -LABEL org.opencontainers.image.created="2024-11-15T11:56:14Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transfer/publish/.config.vsh.yaml b/target/executable/transfer/publish/.config.vsh.yaml index 2b77fb03..96ea5787 100644 --- a/target/executable/transfer/publish/.config.vsh.yaml +++ b/target/executable/transfer/publish/.config.vsh.yaml @@ -146,9 +146,9 @@ build_info: output: "target/executable/transfer/publish" executable: "target/executable/transfer/publish/publish" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transfer/publish/publish b/target/executable/transfer/publish/publish index 20b47d70..0ff81c22 100755 --- a/target/executable/transfer/publish/publish +++ b/target/executable/transfer/publish/publish @@ -465,9 +465,9 @@ FROM ubuntu:22.04 ENTRYPOINT [] LABEL org.opencontainers.image.authors="Toni Verbeiren" LABEL org.opencontainers.image.description="Companion container for running component transfer publish" -LABEL org.opencontainers.image.created="2024-11-15T11:56:15Z" +LABEL org.opencontainers.image.created="2024-11-18T09:23:05Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/bpcells_regress_out/.config.vsh.yaml b/target/executable/transform/bpcells_regress_out/.config.vsh.yaml index d6e4d253..a99c03ce 100644 --- a/target/executable/transform/bpcells_regress_out/.config.vsh.yaml +++ b/target/executable/transform/bpcells_regress_out/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/executable/transform/bpcells_regress_out" executable: "target/executable/transform/bpcells_regress_out/bpcells_regress_out" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/bpcells_regress_out/bpcells_regress_out b/target/executable/transform/bpcells_regress_out/bpcells_regress_out index 5521a5f0..5813597c 100755 --- a/target/executable/transform/bpcells_regress_out/bpcells_regress_out +++ b/target/executable/transform/bpcells_regress_out/bpcells_regress_out @@ -508,9 +508,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dorien Roosen, Robrecht Cannoodt, Weiwei Schultz" LABEL org.opencontainers.image.description="Companion container for running component transform bpcells_regress_out" -LABEL org.opencontainers.image.created="2024-11-15T11:55:56Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/clr/.config.vsh.yaml b/target/executable/transform/clr/.config.vsh.yaml index 92a52aec..85c34cbf 100644 --- a/target/executable/transform/clr/.config.vsh.yaml +++ b/target/executable/transform/clr/.config.vsh.yaml @@ -231,9 +231,9 @@ build_info: output: "target/executable/transform/clr" executable: "target/executable/transform/clr/clr" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/clr/clr b/target/executable/transform/clr/clr index 5f5ca33e..fc68b9dd 100755 --- a/target/executable/transform/clr/clr +++ b/target/executable/transform/clr/clr @@ -500,9 +500,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component transform clr" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:46Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/delete_layer/.config.vsh.yaml b/target/executable/transform/delete_layer/.config.vsh.yaml index 22526951..1ede6b68 100644 --- a/target/executable/transform/delete_layer/.config.vsh.yaml +++ b/target/executable/transform/delete_layer/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/executable/transform/delete_layer" executable: "target/executable/transform/delete_layer/delete_layer" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/delete_layer/delete_layer b/target/executable/transform/delete_layer/delete_layer index 52ec8574..b4ca5ec1 100755 --- a/target/executable/transform/delete_layer/delete_layer +++ b/target/executable/transform/delete_layer/delete_layer @@ -492,9 +492,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component transform delete_layer" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:45Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/log1p/.config.vsh.yaml b/target/executable/transform/log1p/.config.vsh.yaml index 140dcacc..fdf1a1a0 100644 --- a/target/executable/transform/log1p/.config.vsh.yaml +++ b/target/executable/transform/log1p/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/executable/transform/log1p" executable: "target/executable/transform/log1p/log1p" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/log1p/log1p b/target/executable/transform/log1p/log1p index 7b13a7a0..18425d6a 100755 --- a/target/executable/transform/log1p/log1p +++ b/target/executable/transform/log1p/log1p @@ -498,9 +498,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component transform log1p" -LABEL org.opencontainers.image.created="2024-11-15T11:55:56Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/move_layer/.config.vsh.yaml b/target/executable/transform/move_layer/.config.vsh.yaml index bd90418a..6fff2e7d 100644 --- a/target/executable/transform/move_layer/.config.vsh.yaml +++ b/target/executable/transform/move_layer/.config.vsh.yaml @@ -198,9 +198,9 @@ build_info: output: "target/executable/transform/move_layer" executable: "target/executable/transform/move_layer/move_layer" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/move_layer/move_layer b/target/executable/transform/move_layer/move_layer index 9ab98431..794238de 100755 --- a/target/executable/transform/move_layer/move_layer +++ b/target/executable/transform/move_layer/move_layer @@ -487,9 +487,9 @@ RUN pip install --upgrade pip && \ pip install --upgrade --no-cache-dir "anndata==0.10.8" "mudata~=0.2.4" "pandas!=2.1.2" "numpy<2.0.0" LABEL org.opencontainers.image.description="Companion container for running component transform move_layer" -LABEL org.opencontainers.image.created="2024-11-15T11:55:56Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:46Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/normalize_total/.config.vsh.yaml b/target/executable/transform/normalize_total/.config.vsh.yaml index ca44ad75..48128a6e 100644 --- a/target/executable/transform/normalize_total/.config.vsh.yaml +++ b/target/executable/transform/normalize_total/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/executable/transform/normalize_total" executable: "target/executable/transform/normalize_total/normalize_total" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/normalize_total/normalize_total b/target/executable/transform/normalize_total/normalize_total index 1856e5bb..305d958b 100755 --- a/target/executable/transform/normalize_total/normalize_total +++ b/target/executable/transform/normalize_total/normalize_total @@ -515,9 +515,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries De Maeyer, Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component transform normalize_total" -LABEL org.opencontainers.image.created="2024-11-15T11:55:57Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/regress_out/.config.vsh.yaml b/target/executable/transform/regress_out/.config.vsh.yaml index bfe2455c..dce04ee0 100644 --- a/target/executable/transform/regress_out/.config.vsh.yaml +++ b/target/executable/transform/regress_out/.config.vsh.yaml @@ -245,9 +245,9 @@ build_info: output: "target/executable/transform/regress_out" executable: "target/executable/transform/regress_out/regress_out" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/regress_out/regress_out b/target/executable/transform/regress_out/regress_out index 23ccf51b..c153b188 100755 --- a/target/executable/transform/regress_out/regress_out +++ b/target/executable/transform/regress_out/regress_out @@ -506,9 +506,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component transform regress_out" -LABEL org.opencontainers.image.created="2024-11-15T11:55:57Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:47Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/scale/.config.vsh.yaml b/target/executable/transform/scale/.config.vsh.yaml index 830eb060..3d91da6f 100644 --- a/target/executable/transform/scale/.config.vsh.yaml +++ b/target/executable/transform/scale/.config.vsh.yaml @@ -241,9 +241,9 @@ build_info: output: "target/executable/transform/scale" executable: "target/executable/transform/scale/scale" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/scale/scale b/target/executable/transform/scale/scale index 398c806b..bddfc338 100755 --- a/target/executable/transform/scale/scale +++ b/target/executable/transform/scale/scale @@ -503,9 +503,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component transform scale" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:46Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/transform/tfidf/.config.vsh.yaml b/target/executable/transform/tfidf/.config.vsh.yaml index 6211ecef..7582e857 100644 --- a/target/executable/transform/tfidf/.config.vsh.yaml +++ b/target/executable/transform/tfidf/.config.vsh.yaml @@ -269,9 +269,9 @@ build_info: output: "target/executable/transform/tfidf" executable: "target/executable/transform/tfidf/tfidf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/transform/tfidf/tfidf b/target/executable/transform/tfidf/tfidf index 5eb9b768..f29510e7 100755 --- a/target/executable/transform/tfidf/tfidf +++ b/target/executable/transform/tfidf/tfidf @@ -523,9 +523,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Vladimir Shitov" LABEL org.opencontainers.image.description="Companion container for running component transform tfidf" -LABEL org.opencontainers.image.created="2024-11-15T11:55:55Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:45Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/velocity/scvelo/.config.vsh.yaml b/target/executable/velocity/scvelo/.config.vsh.yaml index 8332711e..480fa308 100644 --- a/target/executable/velocity/scvelo/.config.vsh.yaml +++ b/target/executable/velocity/scvelo/.config.vsh.yaml @@ -282,9 +282,9 @@ build_info: output: "target/executable/velocity/scvelo" executable: "target/executable/velocity/scvelo/scvelo" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/velocity/scvelo/scvelo b/target/executable/velocity/scvelo/scvelo index 3ebfb36a..c8385c68 100755 --- a/target/executable/velocity/scvelo/scvelo +++ b/target/executable/velocity/scvelo/scvelo @@ -535,9 +535,9 @@ RUN pip install --upgrade pip && \ LABEL org.opencontainers.image.authors="Dries Schaumont" LABEL org.opencontainers.image.description="Companion container for running component velocity scvelo" -LABEL org.opencontainers.image.created="2024-11-15T11:56:06Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:57Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/executable/velocity/velocyto/.config.vsh.yaml b/target/executable/velocity/velocyto/.config.vsh.yaml index c826ef40..b4986410 100644 --- a/target/executable/velocity/velocyto/.config.vsh.yaml +++ b/target/executable/velocity/velocyto/.config.vsh.yaml @@ -240,9 +240,9 @@ build_info: output: "target/executable/velocity/velocyto" executable: "target/executable/velocity/velocyto/velocyto" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/executable/velocity/velocyto/velocyto b/target/executable/velocity/velocyto/velocyto index f92d4a37..a1281ad8 100755 --- a/target/executable/velocity/velocyto/velocyto +++ b/target/executable/velocity/velocyto/velocyto @@ -501,9 +501,9 @@ RUN apt-get update && \ LABEL org.opencontainers.image.authors="Robrecht Cannoodt" LABEL org.opencontainers.image.description="Companion container for running component velocity velocyto" -LABEL org.opencontainers.image.created="2024-11-15T11:56:06Z" +LABEL org.opencontainers.image.created="2024-11-18T09:22:56Z" LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline" -LABEL org.opencontainers.image.revision="da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" +LABEL org.opencontainers.image.revision="5e3f3231456facaf14da57fa563d4de58492ca82" LABEL org.opencontainers.image.version="fix-integration-tests" VIASHDOCKER diff --git a/target/nextflow/annotate/celltypist/.config.vsh.yaml b/target/nextflow/annotate/celltypist/.config.vsh.yaml index 91536ecf..c764a403 100644 --- a/target/nextflow/annotate/celltypist/.config.vsh.yaml +++ b/target/nextflow/annotate/celltypist/.config.vsh.yaml @@ -396,9 +396,9 @@ build_info: output: "target/nextflow/annotate/celltypist" executable: "target/nextflow/annotate/celltypist/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/annotate/celltypist/main.nf b/target/nextflow/annotate/celltypist/main.nf index 9ef6d259..d085674f 100644 --- a/target/nextflow/annotate/celltypist/main.nf +++ b/target/nextflow/annotate/celltypist/main.nf @@ -3305,9 +3305,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/annotate/celltypist", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/annotate/onclass/.config.vsh.yaml b/target/nextflow/annotate/onclass/.config.vsh.yaml index 4384275f..de247d75 100644 --- a/target/nextflow/annotate/onclass/.config.vsh.yaml +++ b/target/nextflow/annotate/onclass/.config.vsh.yaml @@ -336,9 +336,9 @@ build_info: output: "target/nextflow/annotate/onclass" executable: "target/nextflow/annotate/onclass/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/annotate/onclass/main.nf b/target/nextflow/annotate/onclass/main.nf index 1012ee51..6167410e 100644 --- a/target/nextflow/annotate/onclass/main.nf +++ b/target/nextflow/annotate/onclass/main.nf @@ -3225,9 +3225,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/annotate/onclass", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/annotate/popv/.config.vsh.yaml b/target/nextflow/annotate/popv/.config.vsh.yaml index 2500ade6..328abc44 100644 --- a/target/nextflow/annotate/popv/.config.vsh.yaml +++ b/target/nextflow/annotate/popv/.config.vsh.yaml @@ -356,9 +356,9 @@ build_info: output: "target/nextflow/annotate/popv" executable: "target/nextflow/annotate/popv/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/annotate/popv/main.nf b/target/nextflow/annotate/popv/main.nf index eeb7e060..e01fa4e6 100644 --- a/target/nextflow/annotate/popv/main.nf +++ b/target/nextflow/annotate/popv/main.nf @@ -3260,9 +3260,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/annotate/popv", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/annotate/random_forest_annotation/.config.vsh.yaml b/target/nextflow/annotate/random_forest_annotation/.config.vsh.yaml index e0e459f7..ed15b189 100644 --- a/target/nextflow/annotate/random_forest_annotation/.config.vsh.yaml +++ b/target/nextflow/annotate/random_forest_annotation/.config.vsh.yaml @@ -357,9 +357,9 @@ build_info: output: "target/nextflow/annotate/random_forest_annotation" executable: "target/nextflow/annotate/random_forest_annotation/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/annotate/random_forest_annotation/main.nf b/target/nextflow/annotate/random_forest_annotation/main.nf index 3ca94cef..6fdf471c 100644 --- a/target/nextflow/annotate/random_forest_annotation/main.nf +++ b/target/nextflow/annotate/random_forest_annotation/main.nf @@ -3252,9 +3252,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/annotate/random_forest_annotation", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/annotate/scanvi/.config.vsh.yaml b/target/nextflow/annotate/scanvi/.config.vsh.yaml index 37730737..33ff7143 100644 --- a/target/nextflow/annotate/scanvi/.config.vsh.yaml +++ b/target/nextflow/annotate/scanvi/.config.vsh.yaml @@ -493,9 +493,9 @@ build_info: output: "target/nextflow/annotate/scanvi" executable: "target/nextflow/annotate/scanvi/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/annotate/scanvi/main.nf b/target/nextflow/annotate/scanvi/main.nf index 068e7996..d5e0fae3 100644 --- a/target/nextflow/annotate/scanvi/main.nf +++ b/target/nextflow/annotate/scanvi/main.nf @@ -3441,9 +3441,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/annotate/scanvi", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/annotate/svm_annotation/.config.vsh.yaml b/target/nextflow/annotate/svm_annotation/.config.vsh.yaml index e1968762..70f35916 100644 --- a/target/nextflow/annotate/svm_annotation/.config.vsh.yaml +++ b/target/nextflow/annotate/svm_annotation/.config.vsh.yaml @@ -339,9 +339,9 @@ build_info: output: "target/nextflow/annotate/svm_annotation" executable: "target/nextflow/annotate/svm_annotation/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/annotate/svm_annotation/main.nf b/target/nextflow/annotate/svm_annotation/main.nf index d9c48d2c..7479b9f2 100644 --- a/target/nextflow/annotate/svm_annotation/main.nf +++ b/target/nextflow/annotate/svm_annotation/main.nf @@ -3238,9 +3238,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/annotate/svm_annotation", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/cluster/leiden/.config.vsh.yaml b/target/nextflow/cluster/leiden/.config.vsh.yaml index 20b6a53f..9eab894e 100644 --- a/target/nextflow/cluster/leiden/.config.vsh.yaml +++ b/target/nextflow/cluster/leiden/.config.vsh.yaml @@ -250,9 +250,9 @@ build_info: output: "target/nextflow/cluster/leiden" executable: "target/nextflow/cluster/leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/cluster/leiden/main.nf b/target/nextflow/cluster/leiden/main.nf index 36558710..2f4314ef 100644 --- a/target/nextflow/cluster/leiden/main.nf +++ b/target/nextflow/cluster/leiden/main.nf @@ -3121,9 +3121,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/cluster/leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/compression/compress_h5mu/.config.vsh.yaml b/target/nextflow/compression/compress_h5mu/.config.vsh.yaml index bfc78e70..810862a8 100644 --- a/target/nextflow/compression/compress_h5mu/.config.vsh.yaml +++ b/target/nextflow/compression/compress_h5mu/.config.vsh.yaml @@ -195,9 +195,9 @@ build_info: output: "target/nextflow/compression/compress_h5mu" executable: "target/nextflow/compression/compress_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/compression/compress_h5mu/main.nf b/target/nextflow/compression/compress_h5mu/main.nf index 61284622..8c3a9bd0 100644 --- a/target/nextflow/compression/compress_h5mu/main.nf +++ b/target/nextflow/compression/compress_h5mu/main.nf @@ -3068,9 +3068,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/compression/compress_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/compression/tar_extract/.config.vsh.yaml b/target/nextflow/compression/tar_extract/.config.vsh.yaml index 85da1a66..3661971e 100644 --- a/target/nextflow/compression/tar_extract/.config.vsh.yaml +++ b/target/nextflow/compression/tar_extract/.config.vsh.yaml @@ -169,9 +169,9 @@ build_info: output: "target/nextflow/compression/tar_extract" executable: "target/nextflow/compression/tar_extract/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/compression/tar_extract/main.nf b/target/nextflow/compression/tar_extract/main.nf index 3e595faf..185dd8b7 100644 --- a/target/nextflow/compression/tar_extract/main.nf +++ b/target/nextflow/compression/tar_extract/main.nf @@ -3013,9 +3013,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/compression/tar_extract", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml index eb2784a6..f108d977 100644 --- a/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_10xh5_to_h5mu/.config.vsh.yaml @@ -301,9 +301,9 @@ build_info: output: "target/nextflow/convert/from_10xh5_to_h5mu" executable: "target/nextflow/convert/from_10xh5_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_10xh5_to_h5mu/main.nf b/target/nextflow/convert/from_10xh5_to_h5mu/main.nf index 391ffee6..8ee0636b 100644 --- a/target/nextflow/convert/from_10xh5_to_h5mu/main.nf +++ b/target/nextflow/convert/from_10xh5_to_h5mu/main.nf @@ -3226,9 +3226,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_10xh5_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml index 62f9e122..413b8618 100644 --- a/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_10xmtx_to_h5mu/.config.vsh.yaml @@ -202,9 +202,9 @@ build_info: output: "target/nextflow/convert/from_10xmtx_to_h5mu" executable: "target/nextflow/convert/from_10xmtx_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf b/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf index 23691e37..a740c963 100644 --- a/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf +++ b/target/nextflow/convert/from_10xmtx_to_h5mu/main.nf @@ -3079,9 +3079,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_10xmtx_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml index eed74a33..ad1afa32 100644 --- a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml +++ b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml @@ -178,9 +178,9 @@ build_info: output: "target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags" executable: "target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf index 127fc980..488af713 100644 --- a/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf +++ b/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags/main.nf @@ -3037,9 +3037,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_bd_to_10x_molecular_barcode_tags", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml index 8b8d1924..501ad69d 100644 --- a/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_bdrhap_to_h5mu/.config.vsh.yaml @@ -211,9 +211,9 @@ build_info: output: "target/nextflow/convert/from_bdrhap_to_h5mu" executable: "target/nextflow/convert/from_bdrhap_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf b/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf index e0b4c9c5..489661d8 100644 --- a/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf +++ b/target/nextflow/convert/from_bdrhap_to_h5mu/main.nf @@ -3090,9 +3090,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_bdrhap_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml index 55cb8588..3552e85a 100644 --- a/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/nextflow/convert/from_cellranger_multi_to_h5mu" executable: "target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf b/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf index 6cd69e31..52a0b886 100644 --- a/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf +++ b/target/nextflow/convert/from_cellranger_multi_to_h5mu/main.nf @@ -3100,9 +3100,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_cellranger_multi_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml index ea6be5b1..7dbfa1fb 100644 --- a/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/from_h5ad_to_h5mu/.config.vsh.yaml @@ -206,9 +206,9 @@ build_info: output: "target/nextflow/convert/from_h5ad_to_h5mu" executable: "target/nextflow/convert/from_h5ad_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_h5ad_to_h5mu/main.nf b/target/nextflow/convert/from_h5ad_to_h5mu/main.nf index de312f7e..e6c3801a 100644 --- a/target/nextflow/convert/from_h5ad_to_h5mu/main.nf +++ b/target/nextflow/convert/from_h5ad_to_h5mu/main.nf @@ -3083,9 +3083,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_h5ad_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml b/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml index 71ee4f71..da643447 100644 --- a/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml +++ b/target/nextflow/convert/from_h5mu_to_h5ad/.config.vsh.yaml @@ -211,9 +211,9 @@ build_info: output: "target/nextflow/convert/from_h5mu_to_h5ad" executable: "target/nextflow/convert/from_h5mu_to_h5ad/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_h5mu_to_h5ad/main.nf b/target/nextflow/convert/from_h5mu_to_h5ad/main.nf index c02efb0e..51d79e63 100644 --- a/target/nextflow/convert/from_h5mu_to_h5ad/main.nf +++ b/target/nextflow/convert/from_h5mu_to_h5ad/main.nf @@ -3090,9 +3090,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_h5mu_to_h5ad", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml b/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml index 3cc10f98..f45532cc 100644 --- a/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml +++ b/target/nextflow/convert/from_h5mu_to_seurat/.config.vsh.yaml @@ -185,9 +185,9 @@ build_info: output: "target/nextflow/convert/from_h5mu_to_seurat" executable: "target/nextflow/convert/from_h5mu_to_seurat/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/from_h5mu_to_seurat/main.nf b/target/nextflow/convert/from_h5mu_to_seurat/main.nf index 730f92cd..bfc4006c 100644 --- a/target/nextflow/convert/from_h5mu_to_seurat/main.nf +++ b/target/nextflow/convert/from_h5mu_to_seurat/main.nf @@ -3044,9 +3044,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/from_h5mu_to_seurat", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml b/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml index 1e53ef14..e90cfdb9 100644 --- a/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/convert/velocyto_to_h5mu/.config.vsh.yaml @@ -270,9 +270,9 @@ build_info: output: "target/nextflow/convert/velocyto_to_h5mu" executable: "target/nextflow/convert/velocyto_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/convert/velocyto_to_h5mu/main.nf b/target/nextflow/convert/velocyto_to_h5mu/main.nf index 5fa46fd9..bb4e34cb 100644 --- a/target/nextflow/convert/velocyto_to_h5mu/main.nf +++ b/target/nextflow/convert/velocyto_to_h5mu/main.nf @@ -3165,9 +3165,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/convert/velocyto_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml b/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml index 9d583497..5fc2acbe 100644 --- a/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml +++ b/target/nextflow/correction/cellbender_remove_background/.config.vsh.yaml @@ -606,9 +606,9 @@ build_info: output: "target/nextflow/correction/cellbender_remove_background" executable: "target/nextflow/correction/cellbender_remove_background/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/correction/cellbender_remove_background/main.nf b/target/nextflow/correction/cellbender_remove_background/main.nf index eb4327e8..1f9cb411 100644 --- a/target/nextflow/correction/cellbender_remove_background/main.nf +++ b/target/nextflow/correction/cellbender_remove_background/main.nf @@ -3468,9 +3468,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/correction/cellbender_remove_background", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml b/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml index 6c4aa917..b3bb06a7 100644 --- a/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml +++ b/target/nextflow/correction/cellbender_remove_background_v0_2/.config.vsh.yaml @@ -402,9 +402,9 @@ build_info: output: "target/nextflow/correction/cellbender_remove_background_v0_2" executable: "target/nextflow/correction/cellbender_remove_background_v0_2/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf b/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf index bbbd49a3..afd505a7 100644 --- a/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf +++ b/target/nextflow/correction/cellbender_remove_background_v0_2/main.nf @@ -3281,9 +3281,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/correction/cellbender_remove_background_v0_2", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml b/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml index 8e825428..6301fdd9 100644 --- a/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml +++ b/target/nextflow/dataflow/concatenate_h5mu/.config.vsh.yaml @@ -275,9 +275,9 @@ build_info: output: "target/nextflow/dataflow/concatenate_h5mu" executable: "target/nextflow/dataflow/concatenate_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dataflow/concatenate_h5mu/main.nf b/target/nextflow/dataflow/concatenate_h5mu/main.nf index 07913d5d..5df8bf09 100644 --- a/target/nextflow/dataflow/concatenate_h5mu/main.nf +++ b/target/nextflow/dataflow/concatenate_h5mu/main.nf @@ -3146,9 +3146,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dataflow/concatenate_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dataflow/merge/.config.vsh.yaml b/target/nextflow/dataflow/merge/.config.vsh.yaml index ec73920f..ec72f84e 100644 --- a/target/nextflow/dataflow/merge/.config.vsh.yaml +++ b/target/nextflow/dataflow/merge/.config.vsh.yaml @@ -203,9 +203,9 @@ build_info: output: "target/nextflow/dataflow/merge" executable: "target/nextflow/dataflow/merge/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dataflow/merge/main.nf b/target/nextflow/dataflow/merge/main.nf index bae7d2d2..69948e90 100644 --- a/target/nextflow/dataflow/merge/main.nf +++ b/target/nextflow/dataflow/merge/main.nf @@ -3079,9 +3079,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dataflow/merge", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dataflow/split_h5mu/.config.vsh.yaml b/target/nextflow/dataflow/split_h5mu/.config.vsh.yaml index a839eed1..bc42e69b 100644 --- a/target/nextflow/dataflow/split_h5mu/.config.vsh.yaml +++ b/target/nextflow/dataflow/split_h5mu/.config.vsh.yaml @@ -237,9 +237,9 @@ build_info: output: "target/nextflow/dataflow/split_h5mu" executable: "target/nextflow/dataflow/split_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dataflow/split_h5mu/main.nf b/target/nextflow/dataflow/split_h5mu/main.nf index 973a889b..c946588d 100644 --- a/target/nextflow/dataflow/split_h5mu/main.nf +++ b/target/nextflow/dataflow/split_h5mu/main.nf @@ -3111,9 +3111,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dataflow/split_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dataflow/split_h5mu_train_test/.config.vsh.yaml b/target/nextflow/dataflow/split_h5mu_train_test/.config.vsh.yaml index 78331278..6ded0096 100644 --- a/target/nextflow/dataflow/split_h5mu_train_test/.config.vsh.yaml +++ b/target/nextflow/dataflow/split_h5mu_train_test/.config.vsh.yaml @@ -278,9 +278,9 @@ build_info: output: "target/nextflow/dataflow/split_h5mu_train_test" executable: "target/nextflow/dataflow/split_h5mu_train_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dataflow/split_h5mu_train_test/main.nf b/target/nextflow/dataflow/split_h5mu_train_test/main.nf index b869611e..9a57e5d5 100644 --- a/target/nextflow/dataflow/split_h5mu_train_test/main.nf +++ b/target/nextflow/dataflow/split_h5mu_train_test/main.nf @@ -3172,9 +3172,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dataflow/split_h5mu_train_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dataflow/split_modalities/.config.vsh.yaml b/target/nextflow/dataflow/split_modalities/.config.vsh.yaml index e083e94e..0dec061b 100644 --- a/target/nextflow/dataflow/split_modalities/.config.vsh.yaml +++ b/target/nextflow/dataflow/split_modalities/.config.vsh.yaml @@ -228,9 +228,9 @@ build_info: output: "target/nextflow/dataflow/split_modalities" executable: "target/nextflow/dataflow/split_modalities/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dataflow/split_modalities/main.nf b/target/nextflow/dataflow/split_modalities/main.nf index 4843861a..49091887 100644 --- a/target/nextflow/dataflow/split_modalities/main.nf +++ b/target/nextflow/dataflow/split_modalities/main.nf @@ -3112,9 +3112,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dataflow/split_modalities", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/demux/bcl2fastq/.config.vsh.yaml b/target/nextflow/demux/bcl2fastq/.config.vsh.yaml index dd062e03..8438175a 100644 --- a/target/nextflow/demux/bcl2fastq/.config.vsh.yaml +++ b/target/nextflow/demux/bcl2fastq/.config.vsh.yaml @@ -192,9 +192,9 @@ build_info: output: "target/nextflow/demux/bcl2fastq" executable: "target/nextflow/demux/bcl2fastq/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/demux/bcl2fastq/main.nf b/target/nextflow/demux/bcl2fastq/main.nf index 3937c8fc..0a14a704 100644 --- a/target/nextflow/demux/bcl2fastq/main.nf +++ b/target/nextflow/demux/bcl2fastq/main.nf @@ -3055,9 +3055,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/demux/bcl2fastq", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/demux/bcl_convert/.config.vsh.yaml b/target/nextflow/demux/bcl_convert/.config.vsh.yaml index 18e604e8..ac6ed268 100644 --- a/target/nextflow/demux/bcl_convert/.config.vsh.yaml +++ b/target/nextflow/demux/bcl_convert/.config.vsh.yaml @@ -267,9 +267,9 @@ build_info: output: "target/nextflow/demux/bcl_convert" executable: "target/nextflow/demux/bcl_convert/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/demux/bcl_convert/main.nf b/target/nextflow/demux/bcl_convert/main.nf index 1e4e5c24..8625e4d4 100644 --- a/target/nextflow/demux/bcl_convert/main.nf +++ b/target/nextflow/demux/bcl_convert/main.nf @@ -3160,9 +3160,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/demux/bcl_convert", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/demux/cellranger_atac_mkfastq/.config.vsh.yaml b/target/nextflow/demux/cellranger_atac_mkfastq/.config.vsh.yaml index 3c59a96c..881550b7 100644 --- a/target/nextflow/demux/cellranger_atac_mkfastq/.config.vsh.yaml +++ b/target/nextflow/demux/cellranger_atac_mkfastq/.config.vsh.yaml @@ -236,9 +236,9 @@ build_info: output: "target/nextflow/demux/cellranger_atac_mkfastq" executable: "target/nextflow/demux/cellranger_atac_mkfastq/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/demux/cellranger_atac_mkfastq/main.nf b/target/nextflow/demux/cellranger_atac_mkfastq/main.nf index 9d70f4da..a0c8f0ce 100644 --- a/target/nextflow/demux/cellranger_atac_mkfastq/main.nf +++ b/target/nextflow/demux/cellranger_atac_mkfastq/main.nf @@ -3101,9 +3101,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/demux/cellranger_atac_mkfastq", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml b/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml index ed1ed707..3407a69f 100644 --- a/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml +++ b/target/nextflow/demux/cellranger_mkfastq/.config.vsh.yaml @@ -227,9 +227,9 @@ build_info: output: "target/nextflow/demux/cellranger_mkfastq" executable: "target/nextflow/demux/cellranger_mkfastq/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/demux/cellranger_mkfastq/main.nf b/target/nextflow/demux/cellranger_mkfastq/main.nf index 02058907..a25efd37 100644 --- a/target/nextflow/demux/cellranger_mkfastq/main.nf +++ b/target/nextflow/demux/cellranger_mkfastq/main.nf @@ -3112,9 +3112,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/demux/cellranger_mkfastq", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dimred/densmap/.config.vsh.yaml b/target/nextflow/dimred/densmap/.config.vsh.yaml index 696da183..fbb3a111 100644 --- a/target/nextflow/dimred/densmap/.config.vsh.yaml +++ b/target/nextflow/dimred/densmap/.config.vsh.yaml @@ -404,9 +404,9 @@ build_info: output: "target/nextflow/dimred/densmap" executable: "target/nextflow/dimred/densmap/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dimred/densmap/main.nf b/target/nextflow/dimred/densmap/main.nf index 6c53f012..b7698367 100644 --- a/target/nextflow/dimred/densmap/main.nf +++ b/target/nextflow/dimred/densmap/main.nf @@ -3294,9 +3294,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dimred/densmap", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dimred/lsi/.config.vsh.yaml b/target/nextflow/dimred/lsi/.config.vsh.yaml index 286d51b5..68d3a2c2 100644 --- a/target/nextflow/dimred/lsi/.config.vsh.yaml +++ b/target/nextflow/dimred/lsi/.config.vsh.yaml @@ -308,9 +308,9 @@ build_info: output: "target/nextflow/dimred/lsi" executable: "target/nextflow/dimred/lsi/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dimred/lsi/main.nf b/target/nextflow/dimred/lsi/main.nf index 0776466e..1ef2e9ac 100644 --- a/target/nextflow/dimred/lsi/main.nf +++ b/target/nextflow/dimred/lsi/main.nf @@ -3214,9 +3214,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dimred/lsi", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dimred/pca/.config.vsh.yaml b/target/nextflow/dimred/pca/.config.vsh.yaml index a0378960..13953137 100644 --- a/target/nextflow/dimred/pca/.config.vsh.yaml +++ b/target/nextflow/dimred/pca/.config.vsh.yaml @@ -267,9 +267,9 @@ build_info: output: "target/nextflow/dimred/pca" executable: "target/nextflow/dimred/pca/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dimred/pca/main.nf b/target/nextflow/dimred/pca/main.nf index 0341dd0e..694cc625 100644 --- a/target/nextflow/dimred/pca/main.nf +++ b/target/nextflow/dimred/pca/main.nf @@ -3146,9 +3146,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dimred/pca", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dimred/tsne/.config.vsh.yaml b/target/nextflow/dimred/tsne/.config.vsh.yaml index 35f8301a..73ba65b9 100644 --- a/target/nextflow/dimred/tsne/.config.vsh.yaml +++ b/target/nextflow/dimred/tsne/.config.vsh.yaml @@ -316,9 +316,9 @@ build_info: output: "target/nextflow/dimred/tsne" executable: "target/nextflow/dimred/tsne/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dimred/tsne/main.nf b/target/nextflow/dimred/tsne/main.nf index 344982bf..ef0b4ff4 100644 --- a/target/nextflow/dimred/tsne/main.nf +++ b/target/nextflow/dimred/tsne/main.nf @@ -3200,9 +3200,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dimred/tsne", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/dimred/umap/.config.vsh.yaml b/target/nextflow/dimred/umap/.config.vsh.yaml index 1cac6979..732e2da2 100644 --- a/target/nextflow/dimred/umap/.config.vsh.yaml +++ b/target/nextflow/dimred/umap/.config.vsh.yaml @@ -321,9 +321,9 @@ build_info: output: "target/nextflow/dimred/umap" executable: "target/nextflow/dimred/umap/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/dimred/umap/main.nf b/target/nextflow/dimred/umap/main.nf index bbba423b..2c46dcc4 100644 --- a/target/nextflow/dimred/umap/main.nf +++ b/target/nextflow/dimred/umap/main.nf @@ -3195,9 +3195,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/dimred/umap", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/download/download_file/.config.vsh.yaml b/target/nextflow/download/download_file/.config.vsh.yaml index addfdc5f..dea71545 100644 --- a/target/nextflow/download/download_file/.config.vsh.yaml +++ b/target/nextflow/download/download_file/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/nextflow/download/download_file" executable: "target/nextflow/download/download_file/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/download/download_file/main.nf b/target/nextflow/download/download_file/main.nf index e4ac693c..548c67fd 100644 --- a/target/nextflow/download/download_file/main.nf +++ b/target/nextflow/download/download_file/main.nf @@ -3009,9 +3009,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/download/download_file", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/download/sync_test_resources/.config.vsh.yaml b/target/nextflow/download/sync_test_resources/.config.vsh.yaml index 77bd982f..5c53dcf2 100644 --- a/target/nextflow/download/sync_test_resources/.config.vsh.yaml +++ b/target/nextflow/download/sync_test_resources/.config.vsh.yaml @@ -194,9 +194,9 @@ build_info: output: "target/nextflow/download/sync_test_resources" executable: "target/nextflow/download/sync_test_resources/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/download/sync_test_resources/main.nf b/target/nextflow/download/sync_test_resources/main.nf index f07018b5..d292259f 100644 --- a/target/nextflow/download/sync_test_resources/main.nf +++ b/target/nextflow/download/sync_test_resources/main.nf @@ -3059,9 +3059,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/download/sync_test_resources", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml b/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml index 6c9eff80..43d73324 100644 --- a/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml +++ b/target/nextflow/feature_annotation/highly_variable_features_scanpy/.config.vsh.yaml @@ -356,9 +356,9 @@ build_info: output: "target/nextflow/feature_annotation/highly_variable_features_scanpy" executable: "target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf b/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf index 8162920b..74298e13 100644 --- a/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf +++ b/target/nextflow/feature_annotation/highly_variable_features_scanpy/main.nf @@ -3225,9 +3225,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/feature_annotation/highly_variable_features_scanpy", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml b/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml index dc0fc5d1..f8e8699a 100644 --- a/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml +++ b/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/.config.vsh.yaml @@ -393,9 +393,9 @@ build_info: output: "target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy" executable: "target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf b/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf index 8aa8eced..c9e7396a 100644 --- a/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf +++ b/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy/main.nf @@ -3295,9 +3295,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/feature_annotation/score_genes_cell_cycle_scanpy", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/files/make_params/.config.vsh.yaml b/target/nextflow/files/make_params/.config.vsh.yaml index daf9ed1c..859dbe3a 100644 --- a/target/nextflow/files/make_params/.config.vsh.yaml +++ b/target/nextflow/files/make_params/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/nextflow/files/make_params" executable: "target/nextflow/files/make_params/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/files/make_params/main.nf b/target/nextflow/files/make_params/main.nf index bf04546f..2a4cc109 100644 --- a/target/nextflow/files/make_params/main.nf +++ b/target/nextflow/files/make_params/main.nf @@ -3109,9 +3109,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/files/make_params", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/delimit_fraction/.config.vsh.yaml b/target/nextflow/filter/delimit_fraction/.config.vsh.yaml index 3c8931b8..5173a491 100644 --- a/target/nextflow/filter/delimit_fraction/.config.vsh.yaml +++ b/target/nextflow/filter/delimit_fraction/.config.vsh.yaml @@ -263,9 +263,9 @@ build_info: output: "target/nextflow/filter/delimit_fraction" executable: "target/nextflow/filter/delimit_fraction/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/delimit_fraction/main.nf b/target/nextflow/filter/delimit_fraction/main.nf index ec5c0615..b5a28cd2 100644 --- a/target/nextflow/filter/delimit_fraction/main.nf +++ b/target/nextflow/filter/delimit_fraction/main.nf @@ -3150,9 +3150,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/delimit_fraction", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/do_filter/.config.vsh.yaml b/target/nextflow/filter/do_filter/.config.vsh.yaml index 85173d63..b841391b 100644 --- a/target/nextflow/filter/do_filter/.config.vsh.yaml +++ b/target/nextflow/filter/do_filter/.config.vsh.yaml @@ -220,9 +220,9 @@ build_info: output: "target/nextflow/filter/do_filter" executable: "target/nextflow/filter/do_filter/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/do_filter/main.nf b/target/nextflow/filter/do_filter/main.nf index eb4448e1..f5e8b290 100644 --- a/target/nextflow/filter/do_filter/main.nf +++ b/target/nextflow/filter/do_filter/main.nf @@ -3095,9 +3095,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/do_filter", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/filter_with_counts/.config.vsh.yaml b/target/nextflow/filter/filter_with_counts/.config.vsh.yaml index 9a477736..06131583 100644 --- a/target/nextflow/filter/filter_with_counts/.config.vsh.yaml +++ b/target/nextflow/filter/filter_with_counts/.config.vsh.yaml @@ -305,9 +305,9 @@ build_info: output: "target/nextflow/filter/filter_with_counts" executable: "target/nextflow/filter/filter_with_counts/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/filter_with_counts/main.nf b/target/nextflow/filter/filter_with_counts/main.nf index 3be6646e..d01a4ba4 100644 --- a/target/nextflow/filter/filter_with_counts/main.nf +++ b/target/nextflow/filter/filter_with_counts/main.nf @@ -3204,9 +3204,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/filter_with_counts", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml b/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml index 67ff614c..b5727d0e 100644 --- a/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml +++ b/target/nextflow/filter/filter_with_scrublet/.config.vsh.yaml @@ -325,9 +325,9 @@ build_info: output: "target/nextflow/filter/filter_with_scrublet" executable: "target/nextflow/filter/filter_with_scrublet/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/filter_with_scrublet/main.nf b/target/nextflow/filter/filter_with_scrublet/main.nf index 292787cf..6dceef2c 100644 --- a/target/nextflow/filter/filter_with_scrublet/main.nf +++ b/target/nextflow/filter/filter_with_scrublet/main.nf @@ -3205,9 +3205,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/filter_with_scrublet", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/intersect_obs/.config.vsh.yaml b/target/nextflow/filter/intersect_obs/.config.vsh.yaml index 7b69e673..28abc553 100644 --- a/target/nextflow/filter/intersect_obs/.config.vsh.yaml +++ b/target/nextflow/filter/intersect_obs/.config.vsh.yaml @@ -210,9 +210,9 @@ build_info: output: "target/nextflow/filter/intersect_obs" executable: "target/nextflow/filter/intersect_obs/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/intersect_obs/main.nf b/target/nextflow/filter/intersect_obs/main.nf index fa91ba73..960c7207 100644 --- a/target/nextflow/filter/intersect_obs/main.nf +++ b/target/nextflow/filter/intersect_obs/main.nf @@ -3087,9 +3087,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/intersect_obs", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/remove_modality/.config.vsh.yaml b/target/nextflow/filter/remove_modality/.config.vsh.yaml index 1277a4ab..a8aa0e63 100644 --- a/target/nextflow/filter/remove_modality/.config.vsh.yaml +++ b/target/nextflow/filter/remove_modality/.config.vsh.yaml @@ -192,9 +192,9 @@ build_info: output: "target/nextflow/filter/remove_modality" executable: "target/nextflow/filter/remove_modality/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/remove_modality/main.nf b/target/nextflow/filter/remove_modality/main.nf index 1e3ed8a8..2a54d823 100644 --- a/target/nextflow/filter/remove_modality/main.nf +++ b/target/nextflow/filter/remove_modality/main.nf @@ -3058,9 +3058,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/remove_modality", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/subset_h5mu/.config.vsh.yaml b/target/nextflow/filter/subset_h5mu/.config.vsh.yaml index b8cbec1f..266e754e 100644 --- a/target/nextflow/filter/subset_h5mu/.config.vsh.yaml +++ b/target/nextflow/filter/subset_h5mu/.config.vsh.yaml @@ -206,9 +206,9 @@ build_info: output: "target/nextflow/filter/subset_h5mu" executable: "target/nextflow/filter/subset_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/subset_h5mu/main.nf b/target/nextflow/filter/subset_h5mu/main.nf index 0b40ce16..e39a0d12 100644 --- a/target/nextflow/filter/subset_h5mu/main.nf +++ b/target/nextflow/filter/subset_h5mu/main.nf @@ -3077,9 +3077,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/subset_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/filter/subset_obsp/.config.vsh.yaml b/target/nextflow/filter/subset_obsp/.config.vsh.yaml index 339d60c5..da45b259 100644 --- a/target/nextflow/filter/subset_obsp/.config.vsh.yaml +++ b/target/nextflow/filter/subset_obsp/.config.vsh.yaml @@ -240,9 +240,9 @@ build_info: output: "target/nextflow/filter/subset_obsp" executable: "target/nextflow/filter/subset_obsp/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/filter/subset_obsp/main.nf b/target/nextflow/filter/subset_obsp/main.nf index 57dd9d4a..e8c4714c 100644 --- a/target/nextflow/filter/subset_obsp/main.nf +++ b/target/nextflow/filter/subset_obsp/main.nf @@ -3120,9 +3120,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/filter/subset_obsp", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml b/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml index f6f72394..f2abe286 100644 --- a/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/bcftools/.config.vsh.yaml @@ -194,9 +194,9 @@ build_info: output: "target/nextflow/genetic_demux/bcftools" executable: "target/nextflow/genetic_demux/bcftools/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/bcftools/main.nf b/target/nextflow/genetic_demux/bcftools/main.nf index 4a1f6236..9d4813fd 100644 --- a/target/nextflow/genetic_demux/bcftools/main.nf +++ b/target/nextflow/genetic_demux/bcftools/main.nf @@ -3052,9 +3052,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/bcftools", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml b/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml index 49762843..029c1146 100644 --- a/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/cellsnp/.config.vsh.yaml @@ -368,9 +368,9 @@ build_info: output: "target/nextflow/genetic_demux/cellsnp" executable: "target/nextflow/genetic_demux/cellsnp/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/cellsnp/main.nf b/target/nextflow/genetic_demux/cellsnp/main.nf index a6deaea7..2ad8de59 100644 --- a/target/nextflow/genetic_demux/cellsnp/main.nf +++ b/target/nextflow/genetic_demux/cellsnp/main.nf @@ -3247,9 +3247,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/cellsnp", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml b/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml index 10193b59..c2ee05dc 100644 --- a/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/demuxlet/.config.vsh.yaml @@ -447,9 +447,9 @@ build_info: output: "target/nextflow/genetic_demux/demuxlet" executable: "target/nextflow/genetic_demux/demuxlet/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/demuxlet/main.nf b/target/nextflow/genetic_demux/demuxlet/main.nf index 842cdb28..a5a6953d 100644 --- a/target/nextflow/genetic_demux/demuxlet/main.nf +++ b/target/nextflow/genetic_demux/demuxlet/main.nf @@ -3347,9 +3347,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/demuxlet", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml b/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml index 4347dcb2..07eaa274 100644 --- a/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/dsc_pileup/.config.vsh.yaml @@ -366,9 +366,9 @@ build_info: output: "target/nextflow/genetic_demux/dsc_pileup" executable: "target/nextflow/genetic_demux/dsc_pileup/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/dsc_pileup/main.nf b/target/nextflow/genetic_demux/dsc_pileup/main.nf index 5bb1d9c7..79b9c752 100644 --- a/target/nextflow/genetic_demux/dsc_pileup/main.nf +++ b/target/nextflow/genetic_demux/dsc_pileup/main.nf @@ -3251,9 +3251,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/dsc_pileup", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml b/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml index 4edf9cbc..b2a0dcbd 100644 --- a/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/freebayes/.config.vsh.yaml @@ -791,9 +791,9 @@ build_info: output: "target/nextflow/genetic_demux/freebayes" executable: "target/nextflow/genetic_demux/freebayes/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/freebayes/main.nf b/target/nextflow/genetic_demux/freebayes/main.nf index 4e8c6c82..cf954198 100644 --- a/target/nextflow/genetic_demux/freebayes/main.nf +++ b/target/nextflow/genetic_demux/freebayes/main.nf @@ -3688,9 +3688,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/freebayes", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml b/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml index 42805f48..3391661a 100644 --- a/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/freemuxlet/.config.vsh.yaml @@ -363,9 +363,9 @@ build_info: output: "target/nextflow/genetic_demux/freemuxlet" executable: "target/nextflow/genetic_demux/freemuxlet/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/freemuxlet/main.nf b/target/nextflow/genetic_demux/freemuxlet/main.nf index 1b9484c5..8a7ec598 100644 --- a/target/nextflow/genetic_demux/freemuxlet/main.nf +++ b/target/nextflow/genetic_demux/freemuxlet/main.nf @@ -3252,9 +3252,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/freemuxlet", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/samtools/.config.vsh.yaml b/target/nextflow/genetic_demux/samtools/.config.vsh.yaml index fb6f6ef0..31feec0a 100644 --- a/target/nextflow/genetic_demux/samtools/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/samtools/.config.vsh.yaml @@ -172,9 +172,9 @@ build_info: output: "target/nextflow/genetic_demux/samtools" executable: "target/nextflow/genetic_demux/samtools/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/samtools/main.nf b/target/nextflow/genetic_demux/samtools/main.nf index aebe394e..12f696ce 100644 --- a/target/nextflow/genetic_demux/samtools/main.nf +++ b/target/nextflow/genetic_demux/samtools/main.nf @@ -3030,9 +3030,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/samtools", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml b/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml index 4e728f92..aac07c15 100644 --- a/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/scsplit/.config.vsh.yaml @@ -296,9 +296,9 @@ build_info: output: "target/nextflow/genetic_demux/scsplit" executable: "target/nextflow/genetic_demux/scsplit/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/scsplit/main.nf b/target/nextflow/genetic_demux/scsplit/main.nf index c10f2ab1..5660930b 100644 --- a/target/nextflow/genetic_demux/scsplit/main.nf +++ b/target/nextflow/genetic_demux/scsplit/main.nf @@ -3169,9 +3169,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/scsplit", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml b/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml index 70e3a6b4..22f032cb 100644 --- a/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/souporcell/.config.vsh.yaml @@ -284,9 +284,9 @@ build_info: output: "target/nextflow/genetic_demux/souporcell" executable: "target/nextflow/genetic_demux/souporcell/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/souporcell/main.nf b/target/nextflow/genetic_demux/souporcell/main.nf index a5fe2be0..69dc0b02 100644 --- a/target/nextflow/genetic_demux/souporcell/main.nf +++ b/target/nextflow/genetic_demux/souporcell/main.nf @@ -3150,9 +3150,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/souporcell", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/genetic_demux/vireo/.config.vsh.yaml b/target/nextflow/genetic_demux/vireo/.config.vsh.yaml index 74ec18f1..680365f9 100644 --- a/target/nextflow/genetic_demux/vireo/.config.vsh.yaml +++ b/target/nextflow/genetic_demux/vireo/.config.vsh.yaml @@ -304,9 +304,9 @@ build_info: output: "target/nextflow/genetic_demux/vireo" executable: "target/nextflow/genetic_demux/vireo/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/genetic_demux/vireo/main.nf b/target/nextflow/genetic_demux/vireo/main.nf index 72d9bc30..b796c588 100644 --- a/target/nextflow/genetic_demux/vireo/main.nf +++ b/target/nextflow/genetic_demux/vireo/main.nf @@ -3181,9 +3181,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/genetic_demux/vireo", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/integrate/harmonypy/.config.vsh.yaml b/target/nextflow/integrate/harmonypy/.config.vsh.yaml index e0a8ccc9..c8cdc653 100644 --- a/target/nextflow/integrate/harmonypy/.config.vsh.yaml +++ b/target/nextflow/integrate/harmonypy/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/nextflow/integrate/harmonypy" executable: "target/nextflow/integrate/harmonypy/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/integrate/harmonypy/main.nf b/target/nextflow/integrate/harmonypy/main.nf index 66e99423..3fc172fb 100644 --- a/target/nextflow/integrate/harmonypy/main.nf +++ b/target/nextflow/integrate/harmonypy/main.nf @@ -3140,9 +3140,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/integrate/harmonypy", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/integrate/scanorama/.config.vsh.yaml b/target/nextflow/integrate/scanorama/.config.vsh.yaml index c2e76578..25e97d3b 100644 --- a/target/nextflow/integrate/scanorama/.config.vsh.yaml +++ b/target/nextflow/integrate/scanorama/.config.vsh.yaml @@ -296,9 +296,9 @@ build_info: output: "target/nextflow/integrate/scanorama" executable: "target/nextflow/integrate/scanorama/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/integrate/scanorama/main.nf b/target/nextflow/integrate/scanorama/main.nf index e4130f98..c34c57d9 100644 --- a/target/nextflow/integrate/scanorama/main.nf +++ b/target/nextflow/integrate/scanorama/main.nf @@ -3185,9 +3185,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/integrate/scanorama", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/integrate/scarches/.config.vsh.yaml b/target/nextflow/integrate/scarches/.config.vsh.yaml index 9fb6aaf8..137bdb51 100644 --- a/target/nextflow/integrate/scarches/.config.vsh.yaml +++ b/target/nextflow/integrate/scarches/.config.vsh.yaml @@ -337,9 +337,9 @@ build_info: output: "target/nextflow/integrate/scarches" executable: "target/nextflow/integrate/scarches/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/integrate/scarches/main.nf b/target/nextflow/integrate/scarches/main.nf index eb65fb59..0d2ac3aa 100644 --- a/target/nextflow/integrate/scarches/main.nf +++ b/target/nextflow/integrate/scarches/main.nf @@ -3228,9 +3228,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/integrate/scarches", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/integrate/scvi/.config.vsh.yaml b/target/nextflow/integrate/scvi/.config.vsh.yaml index b2c374d1..a02737e4 100644 --- a/target/nextflow/integrate/scvi/.config.vsh.yaml +++ b/target/nextflow/integrate/scvi/.config.vsh.yaml @@ -578,9 +578,9 @@ build_info: output: "target/nextflow/integrate/scvi" executable: "target/nextflow/integrate/scvi/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/integrate/scvi/main.nf b/target/nextflow/integrate/scvi/main.nf index 830e50c9..f532d820 100644 --- a/target/nextflow/integrate/scvi/main.nf +++ b/target/nextflow/integrate/scvi/main.nf @@ -3513,9 +3513,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/integrate/scvi", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/integrate/totalvi/.config.vsh.yaml b/target/nextflow/integrate/totalvi/.config.vsh.yaml index 3d7bdf83..5c10fb33 100644 --- a/target/nextflow/integrate/totalvi/.config.vsh.yaml +++ b/target/nextflow/integrate/totalvi/.config.vsh.yaml @@ -350,9 +350,9 @@ build_info: output: "target/nextflow/integrate/totalvi" executable: "target/nextflow/integrate/totalvi/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/integrate/totalvi/main.nf b/target/nextflow/integrate/totalvi/main.nf index 24f7f820..b02631f8 100644 --- a/target/nextflow/integrate/totalvi/main.nf +++ b/target/nextflow/integrate/totalvi/main.nf @@ -3246,9 +3246,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/integrate/totalvi", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/interpret/lianapy/.config.vsh.yaml b/target/nextflow/interpret/lianapy/.config.vsh.yaml index aa66fc83..e0d70a6a 100644 --- a/target/nextflow/interpret/lianapy/.config.vsh.yaml +++ b/target/nextflow/interpret/lianapy/.config.vsh.yaml @@ -322,9 +322,9 @@ build_info: output: "target/nextflow/interpret/lianapy" executable: "target/nextflow/interpret/lianapy/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/interpret/lianapy/main.nf b/target/nextflow/interpret/lianapy/main.nf index d55eb96d..2949d03b 100644 --- a/target/nextflow/interpret/lianapy/main.nf +++ b/target/nextflow/interpret/lianapy/main.nf @@ -3208,9 +3208,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/interpret/lianapy", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/labels_transfer/knn/.config.vsh.yaml b/target/nextflow/labels_transfer/knn/.config.vsh.yaml index 7f78662d..3cb5f855 100644 --- a/target/nextflow/labels_transfer/knn/.config.vsh.yaml +++ b/target/nextflow/labels_transfer/knn/.config.vsh.yaml @@ -450,9 +450,9 @@ build_info: output: "target/nextflow/labels_transfer/knn" executable: "target/nextflow/labels_transfer/knn/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/labels_transfer/knn/main.nf b/target/nextflow/labels_transfer/knn/main.nf index 09f0ff8e..993d9375 100644 --- a/target/nextflow/labels_transfer/knn/main.nf +++ b/target/nextflow/labels_transfer/knn/main.nf @@ -3373,9 +3373,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/labels_transfer/knn", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml b/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml index 43ff4b1d..35516d4a 100644 --- a/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml +++ b/target/nextflow/labels_transfer/xgboost/.config.vsh.yaml @@ -596,9 +596,9 @@ build_info: output: "target/nextflow/labels_transfer/xgboost" executable: "target/nextflow/labels_transfer/xgboost/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/labels_transfer/xgboost/main.nf b/target/nextflow/labels_transfer/xgboost/main.nf index 0af4ed47..7d32cc87 100644 --- a/target/nextflow/labels_transfer/xgboost/main.nf +++ b/target/nextflow/labels_transfer/xgboost/main.nf @@ -3530,9 +3530,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/labels_transfer/xgboost", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml b/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml index db7fc76a..f0b58107 100644 --- a/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml +++ b/target/nextflow/mapping/bd_rhapsody/.config.vsh.yaml @@ -1122,9 +1122,9 @@ build_info: output: "target/nextflow/mapping/bd_rhapsody" executable: "target/nextflow/mapping/bd_rhapsody/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/bd_rhapsody/main.nf b/target/nextflow/mapping/bd_rhapsody/main.nf index 2fde1bb0..4b919f10 100644 --- a/target/nextflow/mapping/bd_rhapsody/main.nf +++ b/target/nextflow/mapping/bd_rhapsody/main.nf @@ -4206,9 +4206,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/bd_rhapsody", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/cellranger_atac_count/.config.vsh.yaml b/target/nextflow/mapping/cellranger_atac_count/.config.vsh.yaml index 9c79cef6..baeb4292 100644 --- a/target/nextflow/mapping/cellranger_atac_count/.config.vsh.yaml +++ b/target/nextflow/mapping/cellranger_atac_count/.config.vsh.yaml @@ -251,9 +251,9 @@ build_info: output: "target/nextflow/mapping/cellranger_atac_count" executable: "target/nextflow/mapping/cellranger_atac_count/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/cellranger_atac_count/main.nf b/target/nextflow/mapping/cellranger_atac_count/main.nf index 880c9956..10fa5155 100644 --- a/target/nextflow/mapping/cellranger_atac_count/main.nf +++ b/target/nextflow/mapping/cellranger_atac_count/main.nf @@ -3119,9 +3119,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/cellranger_atac_count", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/cellranger_count/.config.vsh.yaml b/target/nextflow/mapping/cellranger_count/.config.vsh.yaml index 0e08f4f9..a6d8f32f 100644 --- a/target/nextflow/mapping/cellranger_count/.config.vsh.yaml +++ b/target/nextflow/mapping/cellranger_count/.config.vsh.yaml @@ -361,9 +361,9 @@ build_info: output: "target/nextflow/mapping/cellranger_count" executable: "target/nextflow/mapping/cellranger_count/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/cellranger_count/main.nf b/target/nextflow/mapping/cellranger_count/main.nf index 622e259c..c34a45c7 100644 --- a/target/nextflow/mapping/cellranger_count/main.nf +++ b/target/nextflow/mapping/cellranger_count/main.nf @@ -3261,9 +3261,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/cellranger_count", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml b/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml index 33ebb1b5..cb5a12c6 100644 --- a/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml +++ b/target/nextflow/mapping/cellranger_count_split/.config.vsh.yaml @@ -235,9 +235,9 @@ build_info: output: "target/nextflow/mapping/cellranger_count_split" executable: "target/nextflow/mapping/cellranger_count_split/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/cellranger_count_split/main.nf b/target/nextflow/mapping/cellranger_count_split/main.nf index add9abd4..7d146db6 100644 --- a/target/nextflow/mapping/cellranger_count_split/main.nf +++ b/target/nextflow/mapping/cellranger_count_split/main.nf @@ -3117,9 +3117,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/cellranger_count_split", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml b/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml index 4a3d6c5b..5e849a7a 100644 --- a/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml +++ b/target/nextflow/mapping/cellranger_multi/.config.vsh.yaml @@ -900,9 +900,9 @@ build_info: output: "target/nextflow/mapping/cellranger_multi" executable: "target/nextflow/mapping/cellranger_multi/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/cellranger_multi/main.nf b/target/nextflow/mapping/cellranger_multi/main.nf index f1790e1a..f4d858bd 100644 --- a/target/nextflow/mapping/cellranger_multi/main.nf +++ b/target/nextflow/mapping/cellranger_multi/main.nf @@ -3806,9 +3806,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/cellranger_multi", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/htseq_count/.config.vsh.yaml b/target/nextflow/mapping/htseq_count/.config.vsh.yaml index b532a407..cc6aadd0 100644 --- a/target/nextflow/mapping/htseq_count/.config.vsh.yaml +++ b/target/nextflow/mapping/htseq_count/.config.vsh.yaml @@ -421,9 +421,9 @@ build_info: output: "target/nextflow/mapping/htseq_count" executable: "target/nextflow/mapping/htseq_count/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/htseq_count/main.nf b/target/nextflow/mapping/htseq_count/main.nf index 2d58f844..b4103087 100644 --- a/target/nextflow/mapping/htseq_count/main.nf +++ b/target/nextflow/mapping/htseq_count/main.nf @@ -3350,9 +3350,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/htseq_count", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml b/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml index 8dcc8b26..3cfed38f 100644 --- a/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/mapping/htseq_count_to_h5mu/.config.vsh.yaml @@ -227,9 +227,9 @@ build_info: output: "target/nextflow/mapping/htseq_count_to_h5mu" executable: "target/nextflow/mapping/htseq_count_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/htseq_count_to_h5mu/main.nf b/target/nextflow/mapping/htseq_count_to_h5mu/main.nf index 18b6b978..9cf7b2b1 100644 --- a/target/nextflow/mapping/htseq_count_to_h5mu/main.nf +++ b/target/nextflow/mapping/htseq_count_to_h5mu/main.nf @@ -3109,9 +3109,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/htseq_count_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/multi_star/.config.vsh.yaml b/target/nextflow/mapping/multi_star/.config.vsh.yaml index be67a53d..8ca2442b 100644 --- a/target/nextflow/mapping/multi_star/.config.vsh.yaml +++ b/target/nextflow/mapping/multi_star/.config.vsh.yaml @@ -2902,9 +2902,9 @@ build_info: output: "target/nextflow/mapping/multi_star" executable: "target/nextflow/mapping/multi_star/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/multi_star/main.nf b/target/nextflow/mapping/multi_star/main.nf index 6722fcef..d70e24d7 100644 --- a/target/nextflow/mapping/multi_star/main.nf +++ b/target/nextflow/mapping/multi_star/main.nf @@ -6216,9 +6216,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/multi_star", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml b/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml index 73796402..7e1892bb 100644 --- a/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml +++ b/target/nextflow/mapping/multi_star_to_h5mu/.config.vsh.yaml @@ -201,9 +201,9 @@ build_info: output: "target/nextflow/mapping/multi_star_to_h5mu" executable: "target/nextflow/mapping/multi_star_to_h5mu/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/multi_star_to_h5mu/main.nf b/target/nextflow/mapping/multi_star_to_h5mu/main.nf index 5e325712..381ccc90 100644 --- a/target/nextflow/mapping/multi_star_to_h5mu/main.nf +++ b/target/nextflow/mapping/multi_star_to_h5mu/main.nf @@ -3076,9 +3076,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/multi_star_to_h5mu", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/samtools_sort/.config.vsh.yaml b/target/nextflow/mapping/samtools_sort/.config.vsh.yaml index 4c1a9ce8..a00e4748 100644 --- a/target/nextflow/mapping/samtools_sort/.config.vsh.yaml +++ b/target/nextflow/mapping/samtools_sort/.config.vsh.yaml @@ -281,9 +281,9 @@ build_info: output: "target/nextflow/mapping/samtools_sort" executable: "target/nextflow/mapping/samtools_sort/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/samtools_sort/main.nf b/target/nextflow/mapping/samtools_sort/main.nf index 670e514c..ef4cbc5d 100644 --- a/target/nextflow/mapping/samtools_sort/main.nf +++ b/target/nextflow/mapping/samtools_sort/main.nf @@ -3174,9 +3174,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/samtools_sort", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/star_align/.config.vsh.yaml b/target/nextflow/mapping/star_align/.config.vsh.yaml index e4327fc9..312b2009 100644 --- a/target/nextflow/mapping/star_align/.config.vsh.yaml +++ b/target/nextflow/mapping/star_align/.config.vsh.yaml @@ -2369,9 +2369,9 @@ build_info: output: "target/nextflow/mapping/star_align" executable: "target/nextflow/mapping/star_align/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/star_align/main.nf b/target/nextflow/mapping/star_align/main.nf index 6fce955c..aaee2dd8 100644 --- a/target/nextflow/mapping/star_align/main.nf +++ b/target/nextflow/mapping/star_align/main.nf @@ -5275,9 +5275,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/star_align", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml b/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml index e807c2e5..ae1e0f74 100644 --- a/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml +++ b/target/nextflow/mapping/star_align_v273a/.config.vsh.yaml @@ -2369,9 +2369,9 @@ build_info: output: "target/nextflow/mapping/star_align_v273a" executable: "target/nextflow/mapping/star_align_v273a/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/mapping/star_align_v273a/main.nf b/target/nextflow/mapping/star_align_v273a/main.nf index 56548aef..dba4101a 100644 --- a/target/nextflow/mapping/star_align_v273a/main.nf +++ b/target/nextflow/mapping/star_align_v273a/main.nf @@ -5275,9 +5275,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/mapping/star_align_v273a", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/add_id/.config.vsh.yaml b/target/nextflow/metadata/add_id/.config.vsh.yaml index 66efd700..140a1179 100644 --- a/target/nextflow/metadata/add_id/.config.vsh.yaml +++ b/target/nextflow/metadata/add_id/.config.vsh.yaml @@ -222,9 +222,9 @@ build_info: output: "target/nextflow/metadata/add_id" executable: "target/nextflow/metadata/add_id/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/add_id/main.nf b/target/nextflow/metadata/add_id/main.nf index 61c5f8b6..989cd6f1 100644 --- a/target/nextflow/metadata/add_id/main.nf +++ b/target/nextflow/metadata/add_id/main.nf @@ -3100,9 +3100,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/add_id", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/copy_obs/.config.vsh.yaml b/target/nextflow/metadata/copy_obs/.config.vsh.yaml index 82b19804..c156f820 100644 --- a/target/nextflow/metadata/copy_obs/.config.vsh.yaml +++ b/target/nextflow/metadata/copy_obs/.config.vsh.yaml @@ -223,9 +223,9 @@ build_info: output: "target/nextflow/metadata/copy_obs" executable: "target/nextflow/metadata/copy_obs/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/copy_obs/main.nf b/target/nextflow/metadata/copy_obs/main.nf index 7398edfd..ca9ff334 100644 --- a/target/nextflow/metadata/copy_obs/main.nf +++ b/target/nextflow/metadata/copy_obs/main.nf @@ -3103,9 +3103,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/copy_obs", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/duplicate_var/.config.vsh.yaml b/target/nextflow/metadata/duplicate_var/.config.vsh.yaml index fc9b854a..81aeb59b 100644 --- a/target/nextflow/metadata/duplicate_var/.config.vsh.yaml +++ b/target/nextflow/metadata/duplicate_var/.config.vsh.yaml @@ -233,9 +233,9 @@ build_info: output: "target/nextflow/metadata/duplicate_var" executable: "target/nextflow/metadata/duplicate_var/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/duplicate_var/main.nf b/target/nextflow/metadata/duplicate_var/main.nf index 8841874f..430db3dd 100644 --- a/target/nextflow/metadata/duplicate_var/main.nf +++ b/target/nextflow/metadata/duplicate_var/main.nf @@ -3114,9 +3114,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/duplicate_var", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml b/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml index 0143d78f..922635f5 100644 --- a/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml +++ b/target/nextflow/metadata/grep_annotation_column/.config.vsh.yaml @@ -274,9 +274,9 @@ build_info: output: "target/nextflow/metadata/grep_annotation_column" executable: "target/nextflow/metadata/grep_annotation_column/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/grep_annotation_column/main.nf b/target/nextflow/metadata/grep_annotation_column/main.nf index e512bec7..5a2c3533 100644 --- a/target/nextflow/metadata/grep_annotation_column/main.nf +++ b/target/nextflow/metadata/grep_annotation_column/main.nf @@ -3158,9 +3158,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/grep_annotation_column", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/join_csv/.config.vsh.yaml b/target/nextflow/metadata/join_csv/.config.vsh.yaml index 8674b53b..1a7210ee 100644 --- a/target/nextflow/metadata/join_csv/.config.vsh.yaml +++ b/target/nextflow/metadata/join_csv/.config.vsh.yaml @@ -252,9 +252,9 @@ build_info: output: "target/nextflow/metadata/join_csv" executable: "target/nextflow/metadata/join_csv/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/join_csv/main.nf b/target/nextflow/metadata/join_csv/main.nf index 3317d576..d1258de6 100644 --- a/target/nextflow/metadata/join_csv/main.nf +++ b/target/nextflow/metadata/join_csv/main.nf @@ -3135,9 +3135,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/join_csv", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml b/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml index 17fbc3f0..f0311e76 100644 --- a/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml +++ b/target/nextflow/metadata/join_uns_to_obs/.config.vsh.yaml @@ -199,9 +199,9 @@ build_info: output: "target/nextflow/metadata/join_uns_to_obs" executable: "target/nextflow/metadata/join_uns_to_obs/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/join_uns_to_obs/main.nf b/target/nextflow/metadata/join_uns_to_obs/main.nf index 2766afab..754829a8 100644 --- a/target/nextflow/metadata/join_uns_to_obs/main.nf +++ b/target/nextflow/metadata/join_uns_to_obs/main.nf @@ -3062,9 +3062,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/join_uns_to_obs", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml b/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml index d128db59..1c32714a 100644 --- a/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml +++ b/target/nextflow/metadata/move_obsm_to_obs/.config.vsh.yaml @@ -218,9 +218,9 @@ build_info: output: "target/nextflow/metadata/move_obsm_to_obs" executable: "target/nextflow/metadata/move_obsm_to_obs/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/metadata/move_obsm_to_obs/main.nf b/target/nextflow/metadata/move_obsm_to_obs/main.nf index f93fc328..df12a528 100644 --- a/target/nextflow/metadata/move_obsm_to_obs/main.nf +++ b/target/nextflow/metadata/move_obsm_to_obs/main.nf @@ -3095,9 +3095,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/metadata/move_obsm_to_obs", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/neighbors/bbknn/.config.vsh.yaml b/target/nextflow/neighbors/bbknn/.config.vsh.yaml index f0269abc..6b38a4ad 100644 --- a/target/nextflow/neighbors/bbknn/.config.vsh.yaml +++ b/target/nextflow/neighbors/bbknn/.config.vsh.yaml @@ -302,9 +302,9 @@ build_info: output: "target/nextflow/neighbors/bbknn" executable: "target/nextflow/neighbors/bbknn/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/neighbors/bbknn/main.nf b/target/nextflow/neighbors/bbknn/main.nf index 61698fe8..f1767194 100644 --- a/target/nextflow/neighbors/bbknn/main.nf +++ b/target/nextflow/neighbors/bbknn/main.nf @@ -3183,9 +3183,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/neighbors/bbknn", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml b/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml index 55c334a3..efc40efe 100644 --- a/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml +++ b/target/nextflow/neighbors/find_neighbors/.config.vsh.yaml @@ -351,9 +351,9 @@ build_info: output: "target/nextflow/neighbors/find_neighbors" executable: "target/nextflow/neighbors/find_neighbors/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/neighbors/find_neighbors/main.nf b/target/nextflow/neighbors/find_neighbors/main.nf index bb4f6187..f18dd564 100644 --- a/target/nextflow/neighbors/find_neighbors/main.nf +++ b/target/nextflow/neighbors/find_neighbors/main.nf @@ -3246,9 +3246,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/neighbors/find_neighbors", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml b/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml index d25cd4d0..9ab82108 100644 --- a/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml +++ b/target/nextflow/process_10xh5/filter_10xh5/.config.vsh.yaml @@ -214,9 +214,9 @@ build_info: output: "target/nextflow/process_10xh5/filter_10xh5" executable: "target/nextflow/process_10xh5/filter_10xh5/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/process_10xh5/filter_10xh5/main.nf b/target/nextflow/process_10xh5/filter_10xh5/main.nf index f90e8510..2a6231ed 100644 --- a/target/nextflow/process_10xh5/filter_10xh5/main.nf +++ b/target/nextflow/process_10xh5/filter_10xh5/main.nf @@ -3082,9 +3082,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/process_10xh5/filter_10xh5", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml b/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml index ccd9ed7f..47c88e79 100644 --- a/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml +++ b/target/nextflow/qc/calculate_qc_metrics/.config.vsh.yaml @@ -334,9 +334,9 @@ build_info: output: "target/nextflow/qc/calculate_qc_metrics" executable: "target/nextflow/qc/calculate_qc_metrics/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/qc/calculate_qc_metrics/main.nf b/target/nextflow/qc/calculate_qc_metrics/main.nf index 24ad872d..820a6107 100644 --- a/target/nextflow/qc/calculate_qc_metrics/main.nf +++ b/target/nextflow/qc/calculate_qc_metrics/main.nf @@ -3216,9 +3216,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/qc/calculate_qc_metrics", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/qc/fastqc/.config.vsh.yaml b/target/nextflow/qc/fastqc/.config.vsh.yaml index ea626da4..bb77aabd 100644 --- a/target/nextflow/qc/fastqc/.config.vsh.yaml +++ b/target/nextflow/qc/fastqc/.config.vsh.yaml @@ -175,9 +175,9 @@ build_info: output: "target/nextflow/qc/fastqc" executable: "target/nextflow/qc/fastqc/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/qc/fastqc/main.nf b/target/nextflow/qc/fastqc/main.nf index 0e8f59d8..7f9f2c5e 100644 --- a/target/nextflow/qc/fastqc/main.nf +++ b/target/nextflow/qc/fastqc/main.nf @@ -3023,9 +3023,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/qc/fastqc", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/qc/multiqc/.config.vsh.yaml b/target/nextflow/qc/multiqc/.config.vsh.yaml index b70e82a8..5fc16e6e 100644 --- a/target/nextflow/qc/multiqc/.config.vsh.yaml +++ b/target/nextflow/qc/multiqc/.config.vsh.yaml @@ -161,9 +161,9 @@ build_info: output: "target/nextflow/qc/multiqc" executable: "target/nextflow/qc/multiqc/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/qc/multiqc/main.nf b/target/nextflow/qc/multiqc/main.nf index cff025ea..8da273e7 100644 --- a/target/nextflow/qc/multiqc/main.nf +++ b/target/nextflow/qc/multiqc/main.nf @@ -3010,9 +3010,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/qc/multiqc", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/query/cellxgene_census/.config.vsh.yaml b/target/nextflow/query/cellxgene_census/.config.vsh.yaml index f2c2a26e..e03ade25 100644 --- a/target/nextflow/query/cellxgene_census/.config.vsh.yaml +++ b/target/nextflow/query/cellxgene_census/.config.vsh.yaml @@ -524,9 +524,9 @@ build_info: output: "target/nextflow/query/cellxgene_census" executable: "target/nextflow/query/cellxgene_census/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/query/cellxgene_census/main.nf b/target/nextflow/query/cellxgene_census/main.nf index 8327eacd..0273136c 100644 --- a/target/nextflow/query/cellxgene_census/main.nf +++ b/target/nextflow/query/cellxgene_census/main.nf @@ -3456,9 +3456,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/query/cellxgene_census", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml b/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml index 4feff4af..b0550158 100644 --- a/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml +++ b/target/nextflow/reference/build_bdrhap_reference/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/nextflow/reference/build_bdrhap_reference" executable: "target/nextflow/reference/build_bdrhap_reference/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/reference/build_bdrhap_reference/main.nf b/target/nextflow/reference/build_bdrhap_reference/main.nf index 209df438..c5183595 100644 --- a/target/nextflow/reference/build_bdrhap_reference/main.nf +++ b/target/nextflow/reference/build_bdrhap_reference/main.nf @@ -3148,9 +3148,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/reference/build_bdrhap_reference", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/reference/build_cellranger_arc_reference/.config.vsh.yaml b/target/nextflow/reference/build_cellranger_arc_reference/.config.vsh.yaml index ba7c91c0..4d06f417 100644 --- a/target/nextflow/reference/build_cellranger_arc_reference/.config.vsh.yaml +++ b/target/nextflow/reference/build_cellranger_arc_reference/.config.vsh.yaml @@ -245,9 +245,9 @@ build_info: output: "target/nextflow/reference/build_cellranger_arc_reference" executable: "target/nextflow/reference/build_cellranger_arc_reference/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/reference/build_cellranger_arc_reference/main.nf b/target/nextflow/reference/build_cellranger_arc_reference/main.nf index 152e8b23..e20bbd8f 100644 --- a/target/nextflow/reference/build_cellranger_arc_reference/main.nf +++ b/target/nextflow/reference/build_cellranger_arc_reference/main.nf @@ -3110,9 +3110,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/reference/build_cellranger_arc_reference", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml b/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml index 9ae3973e..3f6fa2a3 100644 --- a/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml +++ b/target/nextflow/reference/build_cellranger_reference/.config.vsh.yaml @@ -213,9 +213,9 @@ build_info: output: "target/nextflow/reference/build_cellranger_reference" executable: "target/nextflow/reference/build_cellranger_reference/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/reference/build_cellranger_reference/main.nf b/target/nextflow/reference/build_cellranger_reference/main.nf index 8ee099fe..c40616f0 100644 --- a/target/nextflow/reference/build_cellranger_reference/main.nf +++ b/target/nextflow/reference/build_cellranger_reference/main.nf @@ -3084,9 +3084,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/reference/build_cellranger_reference", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/reference/build_star_reference/.config.vsh.yaml b/target/nextflow/reference/build_star_reference/.config.vsh.yaml index 5093df0a..9c7e8044 100644 --- a/target/nextflow/reference/build_star_reference/.config.vsh.yaml +++ b/target/nextflow/reference/build_star_reference/.config.vsh.yaml @@ -207,9 +207,9 @@ build_info: output: "target/nextflow/reference/build_star_reference" executable: "target/nextflow/reference/build_star_reference/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/reference/build_star_reference/main.nf b/target/nextflow/reference/build_star_reference/main.nf index 2010f7ca..4777d005 100644 --- a/target/nextflow/reference/build_star_reference/main.nf +++ b/target/nextflow/reference/build_star_reference/main.nf @@ -3064,9 +3064,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/reference/build_star_reference", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/reference/cellranger_mkgtf/.config.vsh.yaml b/target/nextflow/reference/cellranger_mkgtf/.config.vsh.yaml index abb8c7a0..a0f48bcb 100644 --- a/target/nextflow/reference/cellranger_mkgtf/.config.vsh.yaml +++ b/target/nextflow/reference/cellranger_mkgtf/.config.vsh.yaml @@ -183,9 +183,9 @@ build_info: output: "target/nextflow/reference/cellranger_mkgtf" executable: "target/nextflow/reference/cellranger_mkgtf/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/reference/cellranger_mkgtf/main.nf b/target/nextflow/reference/cellranger_mkgtf/main.nf index 082c2335..245d5e02 100644 --- a/target/nextflow/reference/cellranger_mkgtf/main.nf +++ b/target/nextflow/reference/cellranger_mkgtf/main.nf @@ -3048,9 +3048,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/reference/cellranger_mkgtf", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/reference/make_reference/.config.vsh.yaml b/target/nextflow/reference/make_reference/.config.vsh.yaml index 81f45607..55bd5615 100644 --- a/target/nextflow/reference/make_reference/.config.vsh.yaml +++ b/target/nextflow/reference/make_reference/.config.vsh.yaml @@ -230,9 +230,9 @@ build_info: output: "target/nextflow/reference/make_reference" executable: "target/nextflow/reference/make_reference/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/reference/make_reference/main.nf b/target/nextflow/reference/make_reference/main.nf index d4f4b61d..4217a11c 100644 --- a/target/nextflow/reference/make_reference/main.nf +++ b/target/nextflow/reference/make_reference/main.nf @@ -3101,9 +3101,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/reference/make_reference", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/report/mermaid/.config.vsh.yaml b/target/nextflow/report/mermaid/.config.vsh.yaml index 7a5f6999..57fe4035 100644 --- a/target/nextflow/report/mermaid/.config.vsh.yaml +++ b/target/nextflow/report/mermaid/.config.vsh.yaml @@ -202,9 +202,9 @@ build_info: output: "target/nextflow/report/mermaid" executable: "target/nextflow/report/mermaid/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/report/mermaid/main.nf b/target/nextflow/report/mermaid/main.nf index fe585732..3a5f1296 100644 --- a/target/nextflow/report/mermaid/main.nf +++ b/target/nextflow/report/mermaid/main.nf @@ -3067,9 +3067,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/report/mermaid", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/scgpt/binning/.config.vsh.yaml b/target/nextflow/scgpt/binning/.config.vsh.yaml index cb082720..8c9ea5b4 100644 --- a/target/nextflow/scgpt/binning/.config.vsh.yaml +++ b/target/nextflow/scgpt/binning/.config.vsh.yaml @@ -249,9 +249,9 @@ build_info: output: "target/nextflow/scgpt/binning" executable: "target/nextflow/scgpt/binning/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/scgpt/binning/main.nf b/target/nextflow/scgpt/binning/main.nf index 54aabba2..58ab5986 100644 --- a/target/nextflow/scgpt/binning/main.nf +++ b/target/nextflow/scgpt/binning/main.nf @@ -3137,9 +3137,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/scgpt/binning", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/scgpt/cell_type_annotation/.config.vsh.yaml b/target/nextflow/scgpt/cell_type_annotation/.config.vsh.yaml index 3160f4eb..66290abe 100644 --- a/target/nextflow/scgpt/cell_type_annotation/.config.vsh.yaml +++ b/target/nextflow/scgpt/cell_type_annotation/.config.vsh.yaml @@ -402,9 +402,9 @@ build_info: output: "target/nextflow/scgpt/cell_type_annotation" executable: "target/nextflow/scgpt/cell_type_annotation/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/scgpt/cell_type_annotation/main.nf b/target/nextflow/scgpt/cell_type_annotation/main.nf index 2de0caf5..5f96241e 100644 --- a/target/nextflow/scgpt/cell_type_annotation/main.nf +++ b/target/nextflow/scgpt/cell_type_annotation/main.nf @@ -3325,9 +3325,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/scgpt/cell_type_annotation", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/scgpt/cross_check_genes/.config.vsh.yaml b/target/nextflow/scgpt/cross_check_genes/.config.vsh.yaml index 17e65732..38039a40 100644 --- a/target/nextflow/scgpt/cross_check_genes/.config.vsh.yaml +++ b/target/nextflow/scgpt/cross_check_genes/.config.vsh.yaml @@ -278,9 +278,9 @@ build_info: output: "target/nextflow/scgpt/cross_check_genes" executable: "target/nextflow/scgpt/cross_check_genes/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/scgpt/cross_check_genes/main.nf b/target/nextflow/scgpt/cross_check_genes/main.nf index fd5a5b62..e50f3061 100644 --- a/target/nextflow/scgpt/cross_check_genes/main.nf +++ b/target/nextflow/scgpt/cross_check_genes/main.nf @@ -3192,9 +3192,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/scgpt/cross_check_genes", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/scgpt/embedding/.config.vsh.yaml b/target/nextflow/scgpt/embedding/.config.vsh.yaml index a0165d8a..ac44749a 100644 --- a/target/nextflow/scgpt/embedding/.config.vsh.yaml +++ b/target/nextflow/scgpt/embedding/.config.vsh.yaml @@ -380,9 +380,9 @@ build_info: output: "target/nextflow/scgpt/embedding" executable: "target/nextflow/scgpt/embedding/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/scgpt/embedding/main.nf b/target/nextflow/scgpt/embedding/main.nf index f1833735..ef11f241 100644 --- a/target/nextflow/scgpt/embedding/main.nf +++ b/target/nextflow/scgpt/embedding/main.nf @@ -3291,9 +3291,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/scgpt/embedding", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/scgpt/pad_tokenize/.config.vsh.yaml b/target/nextflow/scgpt/pad_tokenize/.config.vsh.yaml index d486f69b..9f52d395 100644 --- a/target/nextflow/scgpt/pad_tokenize/.config.vsh.yaml +++ b/target/nextflow/scgpt/pad_tokenize/.config.vsh.yaml @@ -308,9 +308,9 @@ build_info: output: "target/nextflow/scgpt/pad_tokenize" executable: "target/nextflow/scgpt/pad_tokenize/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/scgpt/pad_tokenize/main.nf b/target/nextflow/scgpt/pad_tokenize/main.nf index 32b6b323..92f6fddd 100644 --- a/target/nextflow/scgpt/pad_tokenize/main.nf +++ b/target/nextflow/scgpt/pad_tokenize/main.nf @@ -3209,9 +3209,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/scgpt/pad_tokenize", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml b/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml index ecbf4edf..1c03c803 100644 --- a/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/.config.vsh.yaml @@ -158,9 +158,9 @@ build_info: output: "target/nextflow/test_workflows/ingestion/bd_rhapsody_test" executable: "target/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf b/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf index e1117e9f..2c5e0e99 100644 --- a/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf +++ b/target/nextflow/test_workflows/ingestion/bd_rhapsody_test/main.nf @@ -3017,9 +3017,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/ingestion/bd_rhapsody_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml b/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml index df48532a..1a98a321 100644 --- a/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/nextflow/test_workflows/ingestion/cellranger_mapping_test" executable: "target/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf b/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf index eb35afe4..16cf5660 100644 --- a/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf +++ b/target/nextflow/test_workflows/ingestion/cellranger_mapping_test/main.nf @@ -3016,9 +3016,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/ingestion/cellranger_mapping_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml b/target/nextflow/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml index 5915da8f..e35f0b7f 100644 --- a/target/nextflow/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/ingestion/cellranger_multi_test/.config.vsh.yaml @@ -156,9 +156,9 @@ build_info: output: "target/nextflow/test_workflows/ingestion/cellranger_multi_test" executable: "target/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf b/target/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf index f33fc414..453cacdf 100644 --- a/target/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf +++ b/target/nextflow/test_workflows/ingestion/cellranger_multi_test/main.nf @@ -3016,9 +3016,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/ingestion/cellranger_multi_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml b/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml index fe309d4f..a11b69d2 100644 --- a/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/.config.vsh.yaml @@ -176,9 +176,9 @@ build_info: output: "target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test" executable: "target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf b/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf index 13b9aa39..796b1c3d 100644 --- a/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf +++ b/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test/main.nf @@ -3039,9 +3039,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/ingestion/cellranger_postprocessing_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/ingestion/conversion_test/.config.vsh.yaml b/target/nextflow/test_workflows/ingestion/conversion_test/.config.vsh.yaml index 7e324065..241e1f81 100644 --- a/target/nextflow/test_workflows/ingestion/conversion_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/ingestion/conversion_test/.config.vsh.yaml @@ -152,9 +152,9 @@ build_info: output: "target/nextflow/test_workflows/ingestion/conversion_test" executable: "target/nextflow/test_workflows/ingestion/conversion_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/ingestion/conversion_test/main.nf b/target/nextflow/test_workflows/ingestion/conversion_test/main.nf index 5d17785d..ed05692b 100644 --- a/target/nextflow/test_workflows/ingestion/conversion_test/main.nf +++ b/target/nextflow/test_workflows/ingestion/conversion_test/main.nf @@ -3009,9 +3009,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/ingestion/conversion_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml b/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml index ebe30d5a..c56bca9b 100644 --- a/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/.config.vsh.yaml @@ -147,9 +147,9 @@ build_info: output: "target/nextflow/test_workflows/multiomics/dimensionality_reduction_test" executable: "target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf b/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf index f4351801..5a564fa5 100644 --- a/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf +++ b/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test/main.nf @@ -2999,9 +2999,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/multiomics/dimensionality_reduction_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml index 29af2c7d..deaa1f2e 100644 --- a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/.config.vsh.yaml @@ -72,6 +72,8 @@ runners: - type: "nextflow" id: "nextflow" directives: + label: + - "midmem" tag: "$id" auto: simplifyInput: true @@ -171,9 +173,9 @@ build_info: output: "target/nextflow/test_workflows/multiomics/process_batches/workflow_test" executable: "target/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf index 4e88ae79..89d2c847 100644 --- a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf +++ b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test/main.nf @@ -2911,6 +2911,9 @@ meta = [ "type" : "nextflow", "id" : "nextflow", "directives" : { + "label" : [ + "midmem" + ], "tag" : "$id" }, "auto" : { @@ -3032,9 +3035,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/multiomics/process_batches/workflow_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", @@ -3497,6 +3500,9 @@ meta["defaults"] = [ "image" : "vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test", "tag" : "fix-integration-tests" }, + "label" : [ + "midmem" + ], "tag" : "$id" }'''), diff --git a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml index 8afc0b30..b7d8fa21 100644 --- a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml +++ b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/.config.vsh.yaml @@ -72,6 +72,8 @@ runners: - type: "nextflow" id: "nextflow" directives: + label: + - "midmem" tag: "$id" auto: simplifyInput: true @@ -171,9 +173,9 @@ build_info: output: "target/nextflow/test_workflows/multiomics/process_batches/workflow_test2" executable: "target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf index 75dbfc11..fcfbab91 100644 --- a/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf +++ b/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2/main.nf @@ -2911,6 +2911,9 @@ meta = [ "type" : "nextflow", "id" : "nextflow", "directives" : { + "label" : [ + "midmem" + ], "tag" : "$id" }, "auto" : { @@ -3032,9 +3035,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/multiomics/process_batches/workflow_test2", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", @@ -3527,6 +3530,9 @@ meta["defaults"] = [ "image" : "vsh/openpipeline/test_workflows/multiomics/process_batches/workflow_test2", "tag" : "fix-integration-tests" }, + "label" : [ + "midmem" + ], "tag" : "$id" }'''), diff --git a/target/nextflow/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml b/target/nextflow/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml index c1a5c7a5..6d797674 100644 --- a/target/nextflow/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/multiomics/split_modalities_test/.config.vsh.yaml @@ -182,9 +182,9 @@ build_info: output: "target/nextflow/test_workflows/multiomics/split_modalities_test" executable: "target/nextflow/test_workflows/multiomics/split_modalities_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/multiomics/split_modalities_test/main.nf b/target/nextflow/test_workflows/multiomics/split_modalities_test/main.nf index 14736751..5b716ebf 100644 --- a/target/nextflow/test_workflows/multiomics/split_modalities_test/main.nf +++ b/target/nextflow/test_workflows/multiomics/split_modalities_test/main.nf @@ -3046,9 +3046,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/multiomics/split_modalities_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/test_workflows/qc/qc_test/.config.vsh.yaml b/target/nextflow/test_workflows/qc/qc_test/.config.vsh.yaml index ae014b45..15c75bf3 100644 --- a/target/nextflow/test_workflows/qc/qc_test/.config.vsh.yaml +++ b/target/nextflow/test_workflows/qc/qc_test/.config.vsh.yaml @@ -170,9 +170,9 @@ build_info: output: "target/nextflow/test_workflows/qc/qc_test" executable: "target/nextflow/test_workflows/qc/qc_test/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/test_workflows/qc/qc_test/main.nf b/target/nextflow/test_workflows/qc/qc_test/main.nf index 5744f5a2..cda9bce3 100644 --- a/target/nextflow/test_workflows/qc/qc_test/main.nf +++ b/target/nextflow/test_workflows/qc/qc_test/main.nf @@ -3034,9 +3034,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/test_workflows/qc/qc_test", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transfer/publish/.config.vsh.yaml b/target/nextflow/transfer/publish/.config.vsh.yaml index a673b4f0..024bb30f 100644 --- a/target/nextflow/transfer/publish/.config.vsh.yaml +++ b/target/nextflow/transfer/publish/.config.vsh.yaml @@ -146,9 +146,9 @@ build_info: output: "target/nextflow/transfer/publish" executable: "target/nextflow/transfer/publish/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transfer/publish/main.nf b/target/nextflow/transfer/publish/main.nf index d06d4752..d77cd877 100644 --- a/target/nextflow/transfer/publish/main.nf +++ b/target/nextflow/transfer/publish/main.nf @@ -2994,9 +2994,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transfer/publish", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/bpcells_regress_out/.config.vsh.yaml b/target/nextflow/transform/bpcells_regress_out/.config.vsh.yaml index 414d327f..564a56a5 100644 --- a/target/nextflow/transform/bpcells_regress_out/.config.vsh.yaml +++ b/target/nextflow/transform/bpcells_regress_out/.config.vsh.yaml @@ -273,9 +273,9 @@ build_info: output: "target/nextflow/transform/bpcells_regress_out" executable: "target/nextflow/transform/bpcells_regress_out/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/bpcells_regress_out/main.nf b/target/nextflow/transform/bpcells_regress_out/main.nf index d8c3d688..a9e0d6be 100644 --- a/target/nextflow/transform/bpcells_regress_out/main.nf +++ b/target/nextflow/transform/bpcells_regress_out/main.nf @@ -3172,9 +3172,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/bpcells_regress_out", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/clr/.config.vsh.yaml b/target/nextflow/transform/clr/.config.vsh.yaml index c7cf3aac..cac463bc 100644 --- a/target/nextflow/transform/clr/.config.vsh.yaml +++ b/target/nextflow/transform/clr/.config.vsh.yaml @@ -231,9 +231,9 @@ build_info: output: "target/nextflow/transform/clr" executable: "target/nextflow/transform/clr/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/clr/main.nf b/target/nextflow/transform/clr/main.nf index 36c5706d..0303c635 100644 --- a/target/nextflow/transform/clr/main.nf +++ b/target/nextflow/transform/clr/main.nf @@ -3103,9 +3103,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/clr", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/delete_layer/.config.vsh.yaml b/target/nextflow/transform/delete_layer/.config.vsh.yaml index bc378c11..4873d5f4 100644 --- a/target/nextflow/transform/delete_layer/.config.vsh.yaml +++ b/target/nextflow/transform/delete_layer/.config.vsh.yaml @@ -215,9 +215,9 @@ build_info: output: "target/nextflow/transform/delete_layer" executable: "target/nextflow/transform/delete_layer/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/delete_layer/main.nf b/target/nextflow/transform/delete_layer/main.nf index 967a35dd..b456141e 100644 --- a/target/nextflow/transform/delete_layer/main.nf +++ b/target/nextflow/transform/delete_layer/main.nf @@ -3090,9 +3090,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/delete_layer", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/log1p/.config.vsh.yaml b/target/nextflow/transform/log1p/.config.vsh.yaml index 00c046dd..0d4a0fd7 100644 --- a/target/nextflow/transform/log1p/.config.vsh.yaml +++ b/target/nextflow/transform/log1p/.config.vsh.yaml @@ -243,9 +243,9 @@ build_info: output: "target/nextflow/transform/log1p" executable: "target/nextflow/transform/log1p/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/log1p/main.nf b/target/nextflow/transform/log1p/main.nf index 307cecf9..fc1ad1de 100644 --- a/target/nextflow/transform/log1p/main.nf +++ b/target/nextflow/transform/log1p/main.nf @@ -3128,9 +3128,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/log1p", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/move_layer/.config.vsh.yaml b/target/nextflow/transform/move_layer/.config.vsh.yaml index 5b976d1f..2516831f 100644 --- a/target/nextflow/transform/move_layer/.config.vsh.yaml +++ b/target/nextflow/transform/move_layer/.config.vsh.yaml @@ -198,9 +198,9 @@ build_info: output: "target/nextflow/transform/move_layer" executable: "target/nextflow/transform/move_layer/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/move_layer/main.nf b/target/nextflow/transform/move_layer/main.nf index ed25a2f7..00075d82 100644 --- a/target/nextflow/transform/move_layer/main.nf +++ b/target/nextflow/transform/move_layer/main.nf @@ -3056,9 +3056,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/move_layer", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/normalize_total/.config.vsh.yaml b/target/nextflow/transform/normalize_total/.config.vsh.yaml index 718c7417..98118284 100644 --- a/target/nextflow/transform/normalize_total/.config.vsh.yaml +++ b/target/nextflow/transform/normalize_total/.config.vsh.yaml @@ -257,9 +257,9 @@ build_info: output: "target/nextflow/transform/normalize_total" executable: "target/nextflow/transform/normalize_total/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/normalize_total/main.nf b/target/nextflow/transform/normalize_total/main.nf index 7c010d43..de1d9cf5 100644 --- a/target/nextflow/transform/normalize_total/main.nf +++ b/target/nextflow/transform/normalize_total/main.nf @@ -3133,9 +3133,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/normalize_total", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/regress_out/.config.vsh.yaml b/target/nextflow/transform/regress_out/.config.vsh.yaml index 20a24bab..962c4a2e 100644 --- a/target/nextflow/transform/regress_out/.config.vsh.yaml +++ b/target/nextflow/transform/regress_out/.config.vsh.yaml @@ -245,9 +245,9 @@ build_info: output: "target/nextflow/transform/regress_out" executable: "target/nextflow/transform/regress_out/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/regress_out/main.nf b/target/nextflow/transform/regress_out/main.nf index 884c6f6f..8dc9d19b 100644 --- a/target/nextflow/transform/regress_out/main.nf +++ b/target/nextflow/transform/regress_out/main.nf @@ -3123,9 +3123,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/regress_out", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/scale/.config.vsh.yaml b/target/nextflow/transform/scale/.config.vsh.yaml index 08097dad..b09846a8 100644 --- a/target/nextflow/transform/scale/.config.vsh.yaml +++ b/target/nextflow/transform/scale/.config.vsh.yaml @@ -241,9 +241,9 @@ build_info: output: "target/nextflow/transform/scale" executable: "target/nextflow/transform/scale/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/scale/main.nf b/target/nextflow/transform/scale/main.nf index 838222af..83bb2e94 100644 --- a/target/nextflow/transform/scale/main.nf +++ b/target/nextflow/transform/scale/main.nf @@ -3120,9 +3120,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/scale", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/transform/tfidf/.config.vsh.yaml b/target/nextflow/transform/tfidf/.config.vsh.yaml index 36a4f0b4..cf05bc9b 100644 --- a/target/nextflow/transform/tfidf/.config.vsh.yaml +++ b/target/nextflow/transform/tfidf/.config.vsh.yaml @@ -269,9 +269,9 @@ build_info: output: "target/nextflow/transform/tfidf" executable: "target/nextflow/transform/tfidf/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/transform/tfidf/main.nf b/target/nextflow/transform/tfidf/main.nf index 8195e302..be4145da 100644 --- a/target/nextflow/transform/tfidf/main.nf +++ b/target/nextflow/transform/tfidf/main.nf @@ -3143,9 +3143,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/transform/tfidf", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/velocity/scvelo/.config.vsh.yaml b/target/nextflow/velocity/scvelo/.config.vsh.yaml index 15475fdd..f89b57ae 100644 --- a/target/nextflow/velocity/scvelo/.config.vsh.yaml +++ b/target/nextflow/velocity/scvelo/.config.vsh.yaml @@ -282,9 +282,9 @@ build_info: output: "target/nextflow/velocity/scvelo" executable: "target/nextflow/velocity/scvelo/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/velocity/scvelo/main.nf b/target/nextflow/velocity/scvelo/main.nf index 08c1f017..c36d4bb4 100644 --- a/target/nextflow/velocity/scvelo/main.nf +++ b/target/nextflow/velocity/scvelo/main.nf @@ -3163,9 +3163,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/velocity/scvelo", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/velocity/velocyto/.config.vsh.yaml b/target/nextflow/velocity/velocyto/.config.vsh.yaml index c13d2a0a..7d35bc9e 100644 --- a/target/nextflow/velocity/velocyto/.config.vsh.yaml +++ b/target/nextflow/velocity/velocyto/.config.vsh.yaml @@ -240,9 +240,9 @@ build_info: output: "target/nextflow/velocity/velocyto" executable: "target/nextflow/velocity/velocyto/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" package_config: name: "openpipeline" version: "fix-integration-tests" diff --git a/target/nextflow/velocity/velocyto/main.nf b/target/nextflow/velocity/velocyto/main.nf index ecca9dce..d4e5a565 100644 --- a/target/nextflow/velocity/velocyto/main.nf +++ b/target/nextflow/velocity/velocyto/main.nf @@ -3121,9 +3121,9 @@ meta = [ "engine" : "docker|native", "output" : "/workdir/root/repo/target/nextflow/velocity/velocyto", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml b/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml index 8bef5823..70e7b598 100644 --- a/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml +++ b/target/nextflow/workflows/gdo/gdo_singlesample/.config.vsh.yaml @@ -223,9 +223,9 @@ build_info: output: "target/nextflow/workflows/gdo/gdo_singlesample" executable: "target/nextflow/workflows/gdo/gdo_singlesample/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/filter/filter_with_counts" - "target/nextflow/filter/do_filter" diff --git a/target/nextflow/workflows/gdo/gdo_singlesample/main.nf b/target/nextflow/workflows/gdo/gdo_singlesample/main.nf index 68bf75cd..403ee45c 100644 --- a/target/nextflow/workflows/gdo/gdo_singlesample/main.nf +++ b/target/nextflow/workflows/gdo/gdo_singlesample/main.nf @@ -3098,9 +3098,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/gdo/gdo_singlesample", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml b/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml index 661398db..2d01de41 100644 --- a/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/bd_rhapsody/.config.vsh.yaml @@ -604,9 +604,9 @@ build_info: output: "target/nextflow/workflows/ingestion/bd_rhapsody" executable: "target/nextflow/workflows/ingestion/bd_rhapsody/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/mapping/bd_rhapsody" - "target/nextflow/convert/from_bdrhap_to_h5mu" diff --git a/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf b/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf index 25b264f4..1a5465c2 100644 --- a/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf +++ b/target/nextflow/workflows/ingestion/bd_rhapsody/main.nf @@ -3540,9 +3540,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/bd_rhapsody", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml b/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml index ede4310a..a1f978eb 100644 --- a/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/cellranger_mapping/.config.vsh.yaml @@ -320,9 +320,9 @@ build_info: output: "target/nextflow/workflows/ingestion/cellranger_mapping" executable: "target/nextflow/workflows/ingestion/cellranger_mapping/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/mapping/cellranger_count" - "target/nextflow/mapping/cellranger_count_split" diff --git a/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf b/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf index c4ec8609..1222b253 100644 --- a/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf +++ b/target/nextflow/workflows/ingestion/cellranger_mapping/main.nf @@ -3223,9 +3223,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/cellranger_mapping", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml b/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml index fe9540f9..eb8caff7 100644 --- a/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/cellranger_multi/.config.vsh.yaml @@ -829,9 +829,9 @@ build_info: output: "target/nextflow/workflows/ingestion/cellranger_multi" executable: "target/nextflow/workflows/ingestion/cellranger_multi/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/mapping/cellranger_multi" - "target/nextflow/convert/from_cellranger_multi_to_h5mu" diff --git a/target/nextflow/workflows/ingestion/cellranger_multi/main.nf b/target/nextflow/workflows/ingestion/cellranger_multi/main.nf index 20edaaf8..a7406c83 100644 --- a/target/nextflow/workflows/ingestion/cellranger_multi/main.nf +++ b/target/nextflow/workflows/ingestion/cellranger_multi/main.nf @@ -3682,9 +3682,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/cellranger_multi", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml b/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml index ca35d55e..f70b2070 100644 --- a/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/cellranger_postprocessing/.config.vsh.yaml @@ -231,9 +231,9 @@ build_info: output: "target/nextflow/workflows/ingestion/cellranger_postprocessing" executable: "target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/correction/cellbender_remove_background" - "target/nextflow/filter/filter_with_counts" diff --git a/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf b/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf index 101298f6..de1e430a 100644 --- a/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf +++ b/target/nextflow/workflows/ingestion/cellranger_postprocessing/main.nf @@ -3127,9 +3127,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/cellranger_postprocessing", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml b/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml index 3e100658..16fba3d1 100644 --- a/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/conversion/.config.vsh.yaml @@ -205,9 +205,9 @@ build_info: output: "target/nextflow/workflows/ingestion/conversion" executable: "target/nextflow/workflows/ingestion/conversion/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/convert/from_10xh5_to_h5mu" - "target/nextflow/convert/from_10xmtx_to_h5mu" diff --git a/target/nextflow/workflows/ingestion/conversion/main.nf b/target/nextflow/workflows/ingestion/conversion/main.nf index 6c133071..515aebe1 100644 --- a/target/nextflow/workflows/ingestion/conversion/main.nf +++ b/target/nextflow/workflows/ingestion/conversion/main.nf @@ -3087,9 +3087,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/conversion", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml b/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml index f2eaace7..e7dff552 100644 --- a/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/demux/.config.vsh.yaml @@ -292,9 +292,9 @@ build_info: output: "target/nextflow/workflows/ingestion/demux" executable: "target/nextflow/workflows/ingestion/demux/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/demux/cellranger_mkfastq" - "target/nextflow/demux/bcl_convert" diff --git a/target/nextflow/workflows/ingestion/demux/main.nf b/target/nextflow/workflows/ingestion/demux/main.nf index 7645231b..67f6c111 100644 --- a/target/nextflow/workflows/ingestion/demux/main.nf +++ b/target/nextflow/workflows/ingestion/demux/main.nf @@ -3212,9 +3212,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/demux", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml b/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml index 8cf26d72..ee61f7a9 100644 --- a/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml +++ b/target/nextflow/workflows/ingestion/make_reference/.config.vsh.yaml @@ -394,9 +394,9 @@ build_info: output: "target/nextflow/workflows/ingestion/make_reference" executable: "target/nextflow/workflows/ingestion/make_reference/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/reference/make_reference" - "target/nextflow/reference/build_bdrhap_reference" diff --git a/target/nextflow/workflows/ingestion/make_reference/main.nf b/target/nextflow/workflows/ingestion/make_reference/main.nf index 8f8c00e4..d4756ec8 100644 --- a/target/nextflow/workflows/ingestion/make_reference/main.nf +++ b/target/nextflow/workflows/ingestion/make_reference/main.nf @@ -3311,9 +3311,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/ingestion/make_reference", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml index 25e66daa..380073f4 100644 --- a/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml +++ b/target/nextflow/workflows/integration/bbknn_leiden/.config.vsh.yaml @@ -334,9 +334,9 @@ build_info: output: "target/nextflow/workflows/integration/bbknn_leiden" executable: "target/nextflow/workflows/integration/bbknn_leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/cluster/leiden" - "target/nextflow/dimred/umap" diff --git a/target/nextflow/workflows/integration/bbknn_leiden/main.nf b/target/nextflow/workflows/integration/bbknn_leiden/main.nf index d861882d..95ac0630 100644 --- a/target/nextflow/workflows/integration/bbknn_leiden/main.nf +++ b/target/nextflow/workflows/integration/bbknn_leiden/main.nf @@ -3231,9 +3231,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/integration/bbknn_leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml index 1f2aa2b5..a8e26b3d 100644 --- a/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml +++ b/target/nextflow/workflows/integration/harmony_leiden/.config.vsh.yaml @@ -314,9 +314,9 @@ build_info: output: "target/nextflow/workflows/integration/harmony_leiden" executable: "target/nextflow/workflows/integration/harmony_leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/cluster/leiden" - "target/nextflow/integrate/harmonypy" diff --git a/target/nextflow/workflows/integration/harmony_leiden/main.nf b/target/nextflow/workflows/integration/harmony_leiden/main.nf index 26829411..d5ddce0f 100644 --- a/target/nextflow/workflows/integration/harmony_leiden/main.nf +++ b/target/nextflow/workflows/integration/harmony_leiden/main.nf @@ -3213,9 +3213,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/integration/harmony_leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml index fab5fccd..6451fa18 100644 --- a/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml +++ b/target/nextflow/workflows/integration/scanorama_leiden/.config.vsh.yaml @@ -367,9 +367,9 @@ build_info: output: "target/nextflow/workflows/integration/scanorama_leiden" executable: "target/nextflow/workflows/integration/scanorama_leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/cluster/leiden" - "target/nextflow/integrate/scanorama" diff --git a/target/nextflow/workflows/integration/scanorama_leiden/main.nf b/target/nextflow/workflows/integration/scanorama_leiden/main.nf index 1be02954..e33495bd 100644 --- a/target/nextflow/workflows/integration/scanorama_leiden/main.nf +++ b/target/nextflow/workflows/integration/scanorama_leiden/main.nf @@ -3281,9 +3281,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/integration/scanorama_leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/integration/scgpt_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/scgpt_leiden/.config.vsh.yaml index 7ad00675..db1d7d47 100644 --- a/target/nextflow/workflows/integration/scgpt_leiden/.config.vsh.yaml +++ b/target/nextflow/workflows/integration/scgpt_leiden/.config.vsh.yaml @@ -401,9 +401,9 @@ build_info: output: "target/nextflow/workflows/integration/scgpt_leiden" executable: "target/nextflow/workflows/integration/scgpt_leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/scgpt/cross_check_genes" - "target/nextflow/scgpt/binning" diff --git a/target/nextflow/workflows/integration/scgpt_leiden/main.nf b/target/nextflow/workflows/integration/scgpt_leiden/main.nf index 8a9a1191..40506b08 100644 --- a/target/nextflow/workflows/integration/scgpt_leiden/main.nf +++ b/target/nextflow/workflows/integration/scgpt_leiden/main.nf @@ -3348,9 +3348,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/integration/scgpt_leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml index 8cec4f00..97d8e13b 100644 --- a/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml +++ b/target/nextflow/workflows/integration/scvi_leiden/.config.vsh.yaml @@ -396,9 +396,9 @@ build_info: output: "target/nextflow/workflows/integration/scvi_leiden" executable: "target/nextflow/workflows/integration/scvi_leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/cluster/leiden" - "target/nextflow/metadata/move_obsm_to_obs" diff --git a/target/nextflow/workflows/integration/scvi_leiden/main.nf b/target/nextflow/workflows/integration/scvi_leiden/main.nf index e2be8e3a..8310b9cf 100644 --- a/target/nextflow/workflows/integration/scvi_leiden/main.nf +++ b/target/nextflow/workflows/integration/scvi_leiden/main.nf @@ -3301,9 +3301,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/integration/scvi_leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml b/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml index a7ae62ff..9156b119 100644 --- a/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml +++ b/target/nextflow/workflows/integration/totalvi_leiden/.config.vsh.yaml @@ -475,9 +475,9 @@ build_info: output: "target/nextflow/workflows/integration/totalvi_leiden" executable: "target/nextflow/workflows/integration/totalvi_leiden/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/cluster/leiden" - "target/nextflow/metadata/move_obsm_to_obs" diff --git a/target/nextflow/workflows/integration/totalvi_leiden/main.nf b/target/nextflow/workflows/integration/totalvi_leiden/main.nf index 3e6a1d34..b8f56107 100644 --- a/target/nextflow/workflows/integration/totalvi_leiden/main.nf +++ b/target/nextflow/workflows/integration/totalvi_leiden/main.nf @@ -3408,9 +3408,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/integration/totalvi_leiden", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml b/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml index dad0de31..9cb9f458 100644 --- a/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml +++ b/target/nextflow/workflows/multiomics/dimensionality_reduction/.config.vsh.yaml @@ -277,9 +277,9 @@ build_info: output: "target/nextflow/workflows/multiomics/dimensionality_reduction" executable: "target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/dimred/pca" - "target/nextflow/neighbors/find_neighbors" diff --git a/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf b/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf index efee5d63..d95e23b1 100644 --- a/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf +++ b/target/nextflow/workflows/multiomics/dimensionality_reduction/main.nf @@ -3162,9 +3162,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/multiomics/dimensionality_reduction", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml b/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml index fa4c164c..642138d6 100644 --- a/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml +++ b/target/nextflow/workflows/multiomics/process_batches/.config.vsh.yaml @@ -377,9 +377,9 @@ build_info: output: "target/nextflow/workflows/multiomics/process_batches" executable: "target/nextflow/workflows/multiomics/process_batches/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/dataflow/merge" - "target/nextflow/workflows/multiomics/split_modalities" diff --git a/target/nextflow/workflows/multiomics/process_batches/main.nf b/target/nextflow/workflows/multiomics/process_batches/main.nf index ab161406..b1f96745 100644 --- a/target/nextflow/workflows/multiomics/process_batches/main.nf +++ b/target/nextflow/workflows/multiomics/process_batches/main.nf @@ -3281,9 +3281,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/multiomics/process_batches", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml b/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml index c3e43fab..2fae2902 100644 --- a/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml +++ b/target/nextflow/workflows/multiomics/process_samples/.config.vsh.yaml @@ -650,9 +650,9 @@ build_info: output: "target/nextflow/workflows/multiomics/process_samples" executable: "target/nextflow/workflows/multiomics/process_samples/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/metadata/add_id" - "target/nextflow/workflows/multiomics/split_modalities" diff --git a/target/nextflow/workflows/multiomics/process_samples/main.nf b/target/nextflow/workflows/multiomics/process_samples/main.nf index 45234b74..16dac308 100644 --- a/target/nextflow/workflows/multiomics/process_samples/main.nf +++ b/target/nextflow/workflows/multiomics/process_samples/main.nf @@ -3620,9 +3620,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/multiomics/process_samples", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml b/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml index db13f53f..2471338b 100644 --- a/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml +++ b/target/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml @@ -179,9 +179,9 @@ build_info: output: "target/nextflow/workflows/multiomics/split_modalities" executable: "target/nextflow/workflows/multiomics/split_modalities/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/dataflow/split_modalities" package_config: diff --git a/target/nextflow/workflows/multiomics/split_modalities/main.nf b/target/nextflow/workflows/multiomics/split_modalities/main.nf index fe65633f..db67c952 100644 --- a/target/nextflow/workflows/multiomics/split_modalities/main.nf +++ b/target/nextflow/workflows/multiomics/split_modalities/main.nf @@ -3040,9 +3040,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/multiomics/split_modalities", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml b/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml index 1c41bfb0..9027c734 100644 --- a/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml +++ b/target/nextflow/workflows/prot/prot_multisample/.config.vsh.yaml @@ -283,9 +283,9 @@ build_info: output: "target/nextflow/workflows/prot/prot_multisample" executable: "target/nextflow/workflows/prot/prot_multisample/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/transform/clr" - "target/nextflow/workflows/qc/qc" diff --git a/target/nextflow/workflows/prot/prot_multisample/main.nf b/target/nextflow/workflows/prot/prot_multisample/main.nf index e01b1722..c83d2cac 100644 --- a/target/nextflow/workflows/prot/prot_multisample/main.nf +++ b/target/nextflow/workflows/prot/prot_multisample/main.nf @@ -3158,9 +3158,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/prot/prot_multisample", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml b/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml index 06891f89..d6b2bf7b 100644 --- a/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml +++ b/target/nextflow/workflows/prot/prot_singlesample/.config.vsh.yaml @@ -254,9 +254,9 @@ build_info: output: "target/nextflow/workflows/prot/prot_singlesample" executable: "target/nextflow/workflows/prot/prot_singlesample/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/filter/filter_with_counts" - "target/nextflow/filter/do_filter" diff --git a/target/nextflow/workflows/prot/prot_singlesample/main.nf b/target/nextflow/workflows/prot/prot_singlesample/main.nf index 5df840dc..a8e4394f 100644 --- a/target/nextflow/workflows/prot/prot_singlesample/main.nf +++ b/target/nextflow/workflows/prot/prot_singlesample/main.nf @@ -3152,9 +3152,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/prot/prot_singlesample", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/qc/qc/.config.vsh.yaml b/target/nextflow/workflows/qc/qc/.config.vsh.yaml index 1e0da3d2..c2f3c3ce 100644 --- a/target/nextflow/workflows/qc/qc/.config.vsh.yaml +++ b/target/nextflow/workflows/qc/qc/.config.vsh.yaml @@ -332,9 +332,9 @@ build_info: output: "target/nextflow/workflows/qc/qc" executable: "target/nextflow/workflows/qc/qc/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/transfer/publish" - "target/nextflow/metadata/grep_annotation_column" diff --git a/target/nextflow/workflows/qc/qc/main.nf b/target/nextflow/workflows/qc/qc/main.nf index fc4d74ca..44d88bd4 100644 --- a/target/nextflow/workflows/qc/qc/main.nf +++ b/target/nextflow/workflows/qc/qc/main.nf @@ -3213,9 +3213,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/qc/qc", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml b/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml index 2895b4ce..30d816d1 100644 --- a/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml +++ b/target/nextflow/workflows/rna/rna_multisample/.config.vsh.yaml @@ -427,9 +427,9 @@ build_info: output: "target/nextflow/workflows/rna/rna_multisample" executable: "target/nextflow/workflows/rna/rna_multisample/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/transform/normalize_total" - "target/nextflow/transform/log1p" diff --git a/target/nextflow/workflows/rna/rna_multisample/main.nf b/target/nextflow/workflows/rna/rna_multisample/main.nf index 72f2c9df..eda2f4ef 100644 --- a/target/nextflow/workflows/rna/rna_multisample/main.nf +++ b/target/nextflow/workflows/rna/rna_multisample/main.nf @@ -3343,9 +3343,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/rna/rna_multisample", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline", diff --git a/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml b/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml index a9de0092..33d1076b 100644 --- a/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml +++ b/target/nextflow/workflows/rna/rna_singlesample/.config.vsh.yaml @@ -335,9 +335,9 @@ build_info: output: "target/nextflow/workflows/rna/rna_singlesample" executable: "target/nextflow/workflows/rna/rna_singlesample/main.nf" viash_version: "0.9.0" - git_commit: "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff" - git_remote: "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline" - git_tag: "0.2.0-1939-gda62b4ff" + git_commit: "5e3f3231456facaf14da57fa563d4de58492ca82" + git_remote: "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline" + git_tag: "0.2.0-1942-g5e3f3231" dependencies: - "target/nextflow/filter/filter_with_counts" - "target/nextflow/filter/filter_with_scrublet" diff --git a/target/nextflow/workflows/rna/rna_singlesample/main.nf b/target/nextflow/workflows/rna/rna_singlesample/main.nf index 4d9ca468..585fd684 100644 --- a/target/nextflow/workflows/rna/rna_singlesample/main.nf +++ b/target/nextflow/workflows/rna/rna_singlesample/main.nf @@ -3251,9 +3251,9 @@ meta = [ "engine" : "native", "output" : "/workdir/root/repo/target/nextflow/workflows/rna/rna_singlesample", "viash_version" : "0.9.0", - "git_commit" : "da62b4ffe30b6ef36fcb7ef5944f29d45d1138ff", - "git_remote" : "https://x-access-token:ghs_WgbTvvspBKMSQ5BPucz45vMfHrxqK54Vys9e@github.com/openpipelines-bio/openpipeline", - "git_tag" : "0.2.0-1939-gda62b4ff" + "git_commit" : "5e3f3231456facaf14da57fa563d4de58492ca82", + "git_remote" : "https://x-access-token:ghs_EujrUcz58S6J44CLSvromEPEcaMxTc30MU1j@github.com/openpipelines-bio/openpipeline", + "git_tag" : "0.2.0-1942-g5e3f3231" }, "package_config" : { "name" : "openpipeline",