Build branch fix-integration-tests with version fix-integration-tests (c1fe2a62)

Build pipeline: vsh-ci-dev-rdkgl

Source commit: c1fe2a629d

Source message: Update CHANGELOG
This commit is contained in:
CI
2024-10-18 08:08:08 +00:00
parent cd0af18851
commit 43cfb251c7
1457 changed files with 222 additions and 905786 deletions

View File

@@ -1,6 +1,6 @@
name: "cellbender_remove_background"
namespace: "correction"
version: "dev"
version: "fix-integration-tests"
argument_groups:
- name: "Inputs"
arguments:
@@ -573,7 +573,7 @@ engines:
id: "docker"
image: "nvcr.io/nvidia/cuda:11.8.0-devel-ubuntu22.04"
target_registry: "images.viash-hub.com"
target_tag: "dev"
target_tag: "fix-integration-tests"
namespace_separator: "/"
setup:
- type: "docker"
@@ -606,12 +606,12 @@ build_info:
output: "target/executable/correction/cellbender_remove_background"
executable: "target/executable/correction/cellbender_remove_background/cellbender_remove_background"
viash_version: "0.9.0"
git_commit: "2dbe3b7231f9abb4baa628e76e8abc686e627087"
git_remote: "https://x-access-token:ghs_NVsRTpmVPn6SfFQ131njHQOgn6tt7b1bmmJj@github.com/openpipelines-bio/openpipeline"
git_tag: "0.2.0-1926-g2dbe3b72"
git_commit: "c1fe2a629d77a3b17f3fb3f70217f017d8b2c549"
git_remote: "https://x-access-token:ghs_goWtdwODyO3okSzUw3tKCvxN3t2lR82RHHnr@github.com/openpipelines-bio/openpipeline"
git_tag: "0.2.0-1928-gc1fe2a62"
package_config:
name: "openpipeline"
version: "dev"
version: "fix-integration-tests"
info:
test_resources:
- type: "s3"
@@ -624,10 +624,10 @@ package_config:
- ".test_resources += {path: '/src/base/openpipelinetestutils', dest: 'openpipelinetestutils'}\n\
.resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n\
.runners[.type == 'nextflow'].directives.tag := '$id'\n.runners[.type == 'nextflow'].config.script\
\ := 'includeConfig(\"nextflow_labels.config\")'"
\ := 'includeConfig(\"nextflow_labels.config\")'\n"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'dev'"
- ".engines[.type == 'docker'].target_tag := 'fix-integration-tests'"
organization: "vsh"
links:
repository: "https://github.com/openpipelines-bio/openpipeline"

View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# cellbender_remove_background dev
# cellbender_remove_background fix-integration-tests
#
# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "cellbender_remove_background dev"
echo "cellbender_remove_background fix-integration-tests"
echo ""
echo "Eliminating technical artifacts from high-throughput single-cell RNA sequencing"
echo "data."
@@ -742,10 +742,10 @@ RUN pip install --upgrade pip && \
pip install --upgrade --no-cache-dir "lxml~=4.8.0" "mudata~=0.2.1" "cellbender~=0.3.0"
LABEL org.opencontainers.image.description="Companion container for running component correction cellbender_remove_background"
LABEL org.opencontainers.image.created="2024-10-17T17:49:04Z"
LABEL org.opencontainers.image.created="2024-10-18T06:51:15Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
LABEL org.opencontainers.image.revision="2dbe3b7231f9abb4baa628e76e8abc686e627087"
LABEL org.opencontainers.image.version="dev"
LABEL org.opencontainers.image.revision="c1fe2a629d77a3b17f3fb3f70217f017d8b2c549"
LABEL org.opencontainers.image.version="fix-integration-tests"
VIASHDOCKER
fi
@@ -881,7 +881,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "cellbender_remove_background dev"
echo "cellbender_remove_background fix-integration-tests"
exit
;;
--input)
@@ -1452,7 +1452,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/correction/cellbender_remove_background:dev'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/correction/cellbender_remove_background:fix-integration-tests'
fi
# print dockerfile