Build branch fix-integration-tests with version fix-integration-tests (c1fe2a62)
Build pipeline: vsh-ci-dev-rdkgl
Source commit: c1fe2a629d
Source message: Update CHANGELOG
This commit is contained in:
@@ -1,6 +1,6 @@
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name: "cellbender_remove_background"
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namespace: "correction"
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version: "dev"
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version: "fix-integration-tests"
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argument_groups:
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- name: "Inputs"
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arguments:
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@@ -573,7 +573,7 @@ engines:
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id: "docker"
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image: "nvcr.io/nvidia/cuda:11.8.0-devel-ubuntu22.04"
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target_registry: "images.viash-hub.com"
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target_tag: "dev"
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target_tag: "fix-integration-tests"
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namespace_separator: "/"
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setup:
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- type: "docker"
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@@ -606,12 +606,12 @@ build_info:
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output: "target/executable/correction/cellbender_remove_background"
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executable: "target/executable/correction/cellbender_remove_background/cellbender_remove_background"
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viash_version: "0.9.0"
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git_commit: "2dbe3b7231f9abb4baa628e76e8abc686e627087"
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git_remote: "https://x-access-token:ghs_NVsRTpmVPn6SfFQ131njHQOgn6tt7b1bmmJj@github.com/openpipelines-bio/openpipeline"
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git_tag: "0.2.0-1926-g2dbe3b72"
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git_commit: "c1fe2a629d77a3b17f3fb3f70217f017d8b2c549"
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git_remote: "https://x-access-token:ghs_goWtdwODyO3okSzUw3tKCvxN3t2lR82RHHnr@github.com/openpipelines-bio/openpipeline"
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git_tag: "0.2.0-1928-gc1fe2a62"
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package_config:
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name: "openpipeline"
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version: "dev"
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version: "fix-integration-tests"
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info:
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test_resources:
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- type: "s3"
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@@ -624,10 +624,10 @@ package_config:
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- ".test_resources += {path: '/src/base/openpipelinetestutils', dest: 'openpipelinetestutils'}\n\
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.resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n\
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.runners[.type == 'nextflow'].directives.tag := '$id'\n.runners[.type == 'nextflow'].config.script\
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\ := 'includeConfig(\"nextflow_labels.config\")'"
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\ := 'includeConfig(\"nextflow_labels.config\")'\n"
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- ".engines += { type: \"native\" }"
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- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
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- ".engines[.type == 'docker'].target_tag := 'dev'"
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- ".engines[.type == 'docker'].target_tag := 'fix-integration-tests'"
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organization: "vsh"
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links:
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repository: "https://github.com/openpipelines-bio/openpipeline"
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@@ -1,6 +1,6 @@
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#!/usr/bin/env bash
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# cellbender_remove_background dev
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# cellbender_remove_background fix-integration-tests
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#
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# This wrapper script is auto-generated by viash 0.9.0 and is thus a derivative
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# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
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@@ -171,7 +171,7 @@ VIASH_META_TEMP_DIR="$VIASH_TEMP"
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# ViashHelp: Display helpful explanation about this executable
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function ViashHelp {
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echo "cellbender_remove_background dev"
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echo "cellbender_remove_background fix-integration-tests"
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echo ""
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echo "Eliminating technical artifacts from high-throughput single-cell RNA sequencing"
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echo "data."
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@@ -742,10 +742,10 @@ RUN pip install --upgrade pip && \
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pip install --upgrade --no-cache-dir "lxml~=4.8.0" "mudata~=0.2.1" "cellbender~=0.3.0"
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LABEL org.opencontainers.image.description="Companion container for running component correction cellbender_remove_background"
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LABEL org.opencontainers.image.created="2024-10-17T17:49:04Z"
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LABEL org.opencontainers.image.created="2024-10-18T06:51:15Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="2dbe3b7231f9abb4baa628e76e8abc686e627087"
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LABEL org.opencontainers.image.version="dev"
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LABEL org.opencontainers.image.revision="c1fe2a629d77a3b17f3fb3f70217f017d8b2c549"
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LABEL org.opencontainers.image.version="fix-integration-tests"
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VIASHDOCKER
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fi
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@@ -881,7 +881,7 @@ while [[ $# -gt 0 ]]; do
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shift 1
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;;
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--version)
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echo "cellbender_remove_background dev"
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echo "cellbender_remove_background fix-integration-tests"
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exit
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;;
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--input)
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@@ -1452,7 +1452,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
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# determine docker image id
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if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/correction/cellbender_remove_background:dev'
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/correction/cellbender_remove_background:fix-integration-tests'
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fi
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# print dockerfile
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