Build branch openpipeline/v4.0 with version v4.0.1 to openpipeline on branch v4.0 (e943ae3d)

Build pipeline: openpipelines-bio.openpipeline.v4.0.1-gxhpq

Source commit: e943ae3d15

Source message: Bump version to v4.0.1
This commit is contained in:
CI
2026-02-04 10:23:46 +00:00
parent 4caaaf68ef
commit 4fe82d0fdc
807 changed files with 3924 additions and 3864 deletions

View File

@@ -1,6 +1,6 @@
name: "build_bdrhap_reference"
namespace: "reference"
version: "v4.0.0"
version: "v4.0.1"
authors:
- name: "Robrecht Cannoodt"
roles:
@@ -249,7 +249,7 @@ engines:
id: "docker"
image: "bdgenomics/rhapsody:2.2.1"
target_registry: "images.viash-hub.com"
target_tag: "v4.0.0"
target_tag: "v4.0.1"
namespace_separator: "/"
setup:
- type: "apt"
@@ -274,11 +274,11 @@ build_info:
output: "target/executable/reference/build_bdrhap_reference"
executable: "target/executable/reference/build_bdrhap_reference/build_bdrhap_reference"
viash_version: "0.9.4"
git_commit: "de02293c9e13198622b988dac952b2c8c70a1e35"
git_commit: "e943ae3d1512ded126303c9481cb554d0dd38c92"
git_remote: "https://github.com/openpipelines-bio/openpipeline"
package_config:
name: "openpipeline"
version: "v4.0.0"
version: "v4.0.1"
summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
\ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
@@ -308,7 +308,7 @@ package_config:
)'"
- ".engines += { type: \"native\" }"
- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
- ".engines[.type == 'docker'].target_tag := 'v4.0.0'"
- ".engines[.type == 'docker'].target_tag := 'v4.0.1'"
keywords:
- "single-cell"
- "multimodal"

View File

@@ -1,6 +1,6 @@
#!/usr/bin/env bash
# build_bdrhap_reference v4.0.0
# build_bdrhap_reference v4.0.1
#
# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \
LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
LABEL org.opencontainers.image.description="Companion container for running component reference build_bdrhap_reference"
LABEL org.opencontainers.image.created="2026-01-26T10:04:44Z"
LABEL org.opencontainers.image.created="2026-02-04T09:06:27Z"
LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
LABEL org.opencontainers.image.revision="de02293c9e13198622b988dac952b2c8c70a1e35"
LABEL org.opencontainers.image.version="v4.0.0"
LABEL org.opencontainers.image.revision="e943ae3d1512ded126303c9481cb554d0dd38c92"
LABEL org.opencontainers.image.version="v4.0.1"
VIASHDOCKER
fi
@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
# ViashHelp: Display helpful explanation about this executable
function ViashHelp {
echo "build_bdrhap_reference v4.0.0"
echo "build_bdrhap_reference v4.0.1"
echo ""
echo "The Reference Files Generator creates an archive containing Genome Index"
echo "and Transcriptome annotation files needed for the BD Rhapsody Sequencing"
@@ -711,7 +711,7 @@ while [[ $# -gt 0 ]]; do
shift 1
;;
--version)
echo "build_bdrhap_reference v4.0.0"
echo "build_bdrhap_reference v4.0.1"
exit
;;
--genome_fasta)
@@ -902,7 +902,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
# determine docker image id
if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/reference/build_bdrhap_reference:v4.0.0'
VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/reference/build_bdrhap_reference:v4.0.1'
fi
# print dockerfile