Build branch openpipeline/v4.0 with version v4.0.1 to openpipeline on branch v4.0 (e943ae3d)
Build pipeline: openpipelines-bio.openpipeline.v4.0.1-gxhpq
Source commit: e943ae3d15
Source message: Bump version to v4.0.1
This commit is contained in:
@@ -1,6 +1,6 @@
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name: "build_bdrhap_reference"
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namespace: "reference"
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version: "v4.0.0"
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version: "v4.0.1"
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authors:
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- name: "Robrecht Cannoodt"
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roles:
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@@ -249,7 +249,7 @@ engines:
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id: "docker"
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image: "bdgenomics/rhapsody:2.2.1"
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target_registry: "images.viash-hub.com"
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target_tag: "v4.0.0"
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target_tag: "v4.0.1"
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namespace_separator: "/"
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setup:
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- type: "apt"
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@@ -274,11 +274,11 @@ build_info:
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output: "target/executable/reference/build_bdrhap_reference"
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executable: "target/executable/reference/build_bdrhap_reference/build_bdrhap_reference"
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viash_version: "0.9.4"
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git_commit: "de02293c9e13198622b988dac952b2c8c70a1e35"
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git_commit: "e943ae3d1512ded126303c9481cb554d0dd38c92"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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package_config:
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name: "openpipeline"
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version: "v4.0.0"
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version: "v4.0.1"
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summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
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description: "OpenPipelines are extensible single cell analysis pipelines for reproducible\
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\ and large-scale single cell processing using [Viash](https://viash.io) and [Nextflow](https://www.nextflow.io/).\n\
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@@ -308,7 +308,7 @@ package_config:
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)'"
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- ".engines += { type: \"native\" }"
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- ".engines[.type == 'docker'].target_registry := 'images.viash-hub.com'"
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- ".engines[.type == 'docker'].target_tag := 'v4.0.0'"
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- ".engines[.type == 'docker'].target_tag := 'v4.0.1'"
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keywords:
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- "single-cell"
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- "multimodal"
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@@ -1,6 +1,6 @@
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#!/usr/bin/env bash
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# build_bdrhap_reference v4.0.0
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# build_bdrhap_reference v4.0.1
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#
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# This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
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# work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
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@@ -458,10 +458,10 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Robrecht Cannoodt, Weiwei Schultz"
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LABEL org.opencontainers.image.description="Companion container for running component reference build_bdrhap_reference"
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LABEL org.opencontainers.image.created="2026-01-26T10:04:44Z"
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LABEL org.opencontainers.image.created="2026-02-04T09:06:27Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="de02293c9e13198622b988dac952b2c8c70a1e35"
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LABEL org.opencontainers.image.version="v4.0.0"
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LABEL org.opencontainers.image.revision="e943ae3d1512ded126303c9481cb554d0dd38c92"
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LABEL org.opencontainers.image.version="v4.0.1"
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VIASHDOCKER
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fi
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@@ -578,7 +578,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm)
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# ViashHelp: Display helpful explanation about this executable
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function ViashHelp {
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echo "build_bdrhap_reference v4.0.0"
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echo "build_bdrhap_reference v4.0.1"
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echo ""
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echo "The Reference Files Generator creates an archive containing Genome Index"
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echo "and Transcriptome annotation files needed for the BD Rhapsody Sequencing"
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@@ -711,7 +711,7 @@ while [[ $# -gt 0 ]]; do
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shift 1
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;;
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--version)
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echo "build_bdrhap_reference v4.0.0"
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echo "build_bdrhap_reference v4.0.1"
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exit
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;;
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--genome_fasta)
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@@ -902,7 +902,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
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# determine docker image id
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if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/reference/build_bdrhap_reference:v4.0.0'
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VIASH_DOCKER_IMAGE_ID='images.viash-hub.com/vsh/openpipeline/reference/build_bdrhap_reference:v4.0.1'
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fi
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# print dockerfile
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