CI
cd5554d22f
Build pipeline: vsh-ci-build-template-k4qzr
Source commit: 173327cc56
Source message: Cellranger multi conversion: fix combined AB + CB probe experiments (#1062)
49 lines
2.1 KiB
Plaintext
49 lines
2.1 KiB
Plaintext
process {
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// Default resources for components that hardly do any processing
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memory = { 2.GB * task.attempt }
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cpus = 1
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// Retry for exit codes that have something to do with memory issues
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errorStrategy = { task.exitStatus in 137..140 ? 'retry' : 'terminate' }
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maxRetries = 3
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// The memory a task is assinged increases with each attempt
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// uncomment the line below and adjust the value to set a global upper limit on the memory.
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// resourceLimits = [ memory: 240.Gb ]
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// CPU resources
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withLabel: singlecpu { cpus = 1 }
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withLabel: lowcpu { cpus = 4 }
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withLabel: midcpu { cpus = 10 }
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withLabel: highcpu { cpus = 20 }
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// Memory resources
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withLabel: lowmem { memory = { task?.resourceLimits?.memory && task?.maxRetries && task.attempt >= task.maxRetries ? task.resourceLimits.memory : 4.GB * task.attempt } }
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withLabel: midmem { memory = { task?.resourceLimits?.memory && task?.maxRetries && task.attempt >= task.maxRetries ? task.resourceLimits.memory : 25.GB * task.attempt } }
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withLabel: highmem { memory = { task?.resourceLimits?.memory && task?.maxRetries && task.attempt >= task.maxRetries ? task.resourceLimits.memory : 50.GB * task.attempt } }
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withLabel: veryhighmem { memory = { task?.resourceLimits?.memory && task?.maxRetries && task.attempt >= task.maxRetries ? task.resourceLimits.memory : 75.GB * task.attempt } }
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// Disk space
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withLabel: lowdisk {
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disk = {process.disk ? process.disk : null}
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}
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withLabel: middisk {
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disk = {process.disk ? process.disk : null}
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}
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withLabel: highdisk {
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disk = {process.disk ? process.disk : null}
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}
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withLabel: veryhighdisk {
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disk = {process.disk ? process.disk : null}
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}
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// NOTE: The above labels intentionally do not have an effect by default.
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// The user should set the disk space requirements by adding the following
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// to the compute environment:
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//
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// withLabel: lowdisk { disk = { 20.GB * task.attempt } }
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// withLabel: middisk { disk = { 100.GB * task.attempt } }
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// withLabel: highdisk { disk = { 200.GB * task.attempt } }
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// withLabel: veryhighdisk { disk = { 500.GB * task.attempt } }
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}
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