CI
cd5554d22f
Build pipeline: vsh-ci-build-template-k4qzr
Source commit: 173327cc56
Source message: Cellranger multi conversion: fix combined AB + CB probe experiments (#1062)
62 lines
2.2 KiB
JSON
62 lines
2.2 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "build_cellranger_reference",
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"description": "Build a Cell Ranger-compatible reference folder from user-supplied genome FASTA and gene GTF files. Creates a new folder named after the genome.",
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"type": "object",
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"$defs": {
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"arguments": {
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"title": "Arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"genome_fasta": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "Reference genome fasta.",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`, example: `\"genome_sequence.fa.gz\"`. "
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},
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"transcriptome_gtf": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "Reference transcriptome annotation.",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`, example: `\"transcriptome_annotation.gtf.gz\"`. "
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},
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"reference_version": {
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"type": "string",
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"description": "Optional reference version string to include with reference",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"output": {
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"type": "string",
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"format": "path",
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"description": "Output folder",
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"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output\"`, direction: `output`, example: `\"cellranger_reference\"`. ",
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"default": "$id.$key.output"
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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