bb7533583f
Build pipeline: vsh-ci-dev-gckj5
Source commit: da62b4ffe3
Source message: Add labels to qc_test component
20 lines
617 B
Bash
20 lines
617 B
Bash
#!/bin/bash
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set -eou pipefail
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## VIASH START
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meta_resources_dir="./resources_test"
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meta_executable="./target/docker/mapping/star_build_reference/star_build_reference"
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## VIASH END
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"$meta_executable" \
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--genome_fasta "$meta_resources_dir/cellranger_tiny_fastq/cellranger_tiny_ref/fasta/genome.fa" \
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--transcriptome_gtf "$meta_resources_dir/cellranger_tiny_fastq/cellranger_tiny_ref/genes/genes.gtf.gz" \
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--output "./star_reference_test" \
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--genomeSAindexNbases 7 \
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---cpus 8
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if [ ! -f "./star_reference_test/Genome" ]; then
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echo "Genome file could not be found in the output directory";
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exit 1
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fi |