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openpipeline/src/workflows/integration/bbknn_leiden/integration_test.sh
CI bb7533583f Build branch fix-integration-tests with version fix-integration-tests (da62b4ff)
Build pipeline: vsh-ci-dev-gckj5

Source commit: da62b4ffe3

Source message: Add labels to qc_test component
2024-11-15 14:37:33 +00:00

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637 B
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#!/bin/bash
# get the root of the directory
REPO_ROOT=$(git rev-parse --show-toplevel)
# ensure that the command below is run from the root of the repository
cd "$REPO_ROOT"
nextflow \
run . \
-main-script src/workflows/integration/bbknn_leiden/test.nf \
-entry test_wf \
-profile docker,no_publish \
-c src/workflows/utils/labels_ci.config \
-c src/workflows/utils/integration_tests.config
nextflow \
run . \
-main-script src/workflows/integration/bbknn_leiden/test.nf \
-entry test_wf2 \
-profile docker,no_publish \
-c src/workflows/utils/labels_ci.config \
-c src/workflows/utils/integration_tests.config