CI
cd0af18851
Build pipeline: vsh-ci-dev-k8tz4
Source commit: 2dbe3b7231
Source message: Fix pointers to test resources
20 lines
629 B
Python
20 lines
629 B
Python
def subset_vars(adata, subset_col):
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"""Subset AnnData object on highly variable genes
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Parameters
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----------
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adata : AnnData
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Annotated data object
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subset_col : str
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Name of the boolean column in `adata.var` that contains the information if features should be used or not
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Returns
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-------
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AnnData
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Copy of `adata` with subsetted features
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"""
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if not subset_col in adata.var.columns:
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raise ValueError(f"Requested to use .var column '{subset_col}' as a selection of genes, but the column is not available.")
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return adata[:, adata.var[subset_col]].copy()
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