CI
4caaaf68ef
Build pipeline: openpipelines-bio.openpipeline.v4.0.0-kd9qj
Source commit: de02293c9e
Source message: Bump version to v4.0.0
75 lines
2.6 KiB
JSON
75 lines
2.6 KiB
JSON
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"title": "move_layer",
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"description": "Move a data matrix stored at the .layers or .X attributes in a MuData object to another layer.",
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"type": "object",
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"$defs": {
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"arguments": {
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"title": "Arguments",
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"type": "object",
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"description": "No description",
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"properties": {
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"input": {
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"type": "string",
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"format": "path",
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"exists": true,
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"description": "Input h5mu file",
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"help_text": "Type: `file`, multiple: `False`, required, direction: `input`, example: `\"input.h5mu\"`. "
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},
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"modality": {
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"type": "string",
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"description": "Which modality from the input MuData file to process.\n",
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"help_text": "Type: `string`, multiple: `False`, default: `\"rna\"`. ",
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"default": "rna"
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},
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"input_layer": {
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"type": "string",
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"description": "Input layer to move to a new output location",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"output": {
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"type": "string",
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"format": "path",
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"description": "Output h5mu file.",
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"help_text": "Type: `file`, multiple: `False`, required, default: `\"$id.$key.output.h5mu\"`, direction: `output`, example: `\"output.h5mu\"`. ",
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"default": "$id.$key.output.h5mu"
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},
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"output_layer": {
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"type": "string",
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"description": "Destination location for the layer",
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"help_text": "Type: `string`, multiple: `False`. "
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},
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"output_compression": {
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"type": "string",
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"description": "Compression format to use for the output AnnData and/or Mudata objects.\nBy default no compression is applied.\n",
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"help_text": "Type: `string`, multiple: `False`, example: `\"gzip\"`, choices: ``gzip`, `lzf``. ",
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"enum": [
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"gzip",
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"lzf"
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]
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}
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}
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},
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"nextflow input-output arguments": {
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"title": "Nextflow input-output arguments",
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"type": "object",
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"description": "Input/output parameters for Nextflow itself. Please note that both publishDir and publish_dir are supported but at least one has to be configured.",
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"properties": {
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"publish_dir": {
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"type": "string",
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"description": "Path to an output directory.",
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"help_text": "Type: `string`, multiple: `False`, required, example: `\"output/\"`. "
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}
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}
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}
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},
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"allOf": [
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{
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"$ref": "#/$defs/arguments"
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},
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{
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"$ref": "#/$defs/nextflow input-output arguments"
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}
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]
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}
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