# Inputs
input: # please fill in - example: "input.h5mu"
modality: "rna"
# layer: "raw_counts"

# Outputs
# output: "$id.$key.output.h5mu"
do_subset: false
obs_name_filter: "filter_with_counts"
var_name_filter: "filter_with_counts"
# output_compression: "gzip"

# Arguments
# min_counts: 200
# max_counts: 5000000
# min_genes_per_cell: 200
# max_genes_per_cell: 1500000
# min_cells_per_gene: 3

# Nextflow input-output arguments
publish_dir: # please fill in - example: "output/"
# param_list: "my_params.yaml"
