# Inputs
input: # please fill in - example: "input.h5mu"
modality: "rna"
# input_layer: "foo"
# input_var_gene_names: "foo"
input_reference_gene_overlap: 100

# Reference
# reference: "reference.h5mu"
# reference_layer: "foo"
reference_obs_target: "cell_ontology_class"
# reference_var_gene_names: "foo"
# reference_var_input: "foo"

# Model arguments
# model: "pretrained_model.pkl"
feature_selection: false
majority_voting: false
C: 1.0
max_iter: 1000
use_SGD: false
min_prop: 0.0

# Outputs
# output: "$id.$key.output.h5mu"
output_obs_predictions: "celltypist_pred"
output_obs_probability: "celltypist_probability"
# output_compression: "gzip"

# Nextflow input-output arguments
publish_dir: # please fill in - example: "output/"
# param_list: "my_params.yaml"

# Arguments
