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openpipeline_composed/_viash.yaml

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viash_version: 0.9.7
source: src
target: target
name: openpipeline_composed
organization: vsh
links:
repository: https://github.com/openpipelines-bio/openpipeline_composed
docker_registry: ghcr.io
repositories:
- name: openpipeline
repo: openpipeline
type: vsh
tag: v4.0.4
- name: openpipeline_qc
repo: openpipeline_qc
type: vsh
tag: v0.2.2
- name: biobox
repo: biobox
type: vsh
tag: v0.4.2
info:
test_resources:
- type: s3
path: s3://openpipelines-bio/openpipeline_incubator/resources_test
dest: resources_test
config_mods: |
.requirements.commands := ['ps']
.runners[.type == 'nextflow'].directives.tag := '$id'
.resources += {path: '/src/configs/labels.config', dest: 'nextflow_labels.config'}
.runners[.type == 'nextflow'].config.script := 'includeConfig("nextflow_labels.config")'
version: set-public-scope